BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27070.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492090 jgi|Araly1|492090|fgenesh2_kg.7__1523__AT4G27070.1 2712 0.0
Ahg495562 jgi|Araly1|495562|fgenesh2_kg.8__1378__AT5G54810.1 1327 0.0
> Ahg492090 jgi|Araly1|492090|fgenesh2_kg.7__1523__AT4G27070.1
Length=1822
Score = 2712 bits (1468), Expect = 0.0
Identities = 1715/1829 (94%), Gaps = 38/1829 (2%)
Strand=Plus/Plus
Query 38 TTTTCTGTTGTTCACAAATAAGTTAACGTGGTACCGAACTACCGATTTCCTCCA--CTAT 95
|||| |||||||| |||||||||||||||||||| | | | || ||||| | | |
Sbjct 20 TTTTTTGTTGTTCGCAAATAAGTTAACGTGGTACTG-ATTTCC----TCCTCTATTTTTT 74
Query 96 TTTATTGAATTTCTGGTC-AAAAAACTTAAGTGTTACATAACGAATCTATAAAA-AGAAC 153
|||||||||||||||||| |||||| ||||||| ||||||||||||||||||| | ||
Sbjct 75 TTTATTGAATTTCTGGTCAAAAAAAGGTAAGTGTCACATAACGAATCTATAAAACA-AAA 133
Query 154 CCTCACTTTCAAGGTTTTTGTCAGCAAAACATTTGTCTTCGTGTTTGAAAGCTAGATAAA 213
|| |||||||||||||||||||||||||||||||||||| | |||||| || ||||| ||
Sbjct 134 CCACACTTTCAAGGTTTTTGTCAGCAAAACATTTGTCTTTGAGTTTGAGAGATAGAT-AA 192
Query 214 AGATTCACTAAATGGCCACCGCAAGCACCGCTGCTACTTTCAGACCCTCCTCCGTTTCAG 273
||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 193 AGATTCACT-AATGGCCACCGCAGGCACCGCTGCTACTTTCAGA--C-CCTCCGTTTCAG 248
Query 274 CTTCTTCCGAATTAACCCATCTGAGATCACCCTCCAAACTCCCCAAATTTACGCCTCTGC 333
||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 249 CTTCTTCCGAAGCAACCCGTCTGAGATCGCCCTCCAAACTCCCCAAATTTACGCCTCTGC 308
Query 334 CATCGGCTCGCTCACGGTCCTCTTCTTCGTTCTCCGTCTCCTGCACCATCGCTAAGGACC 393
||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 309 CATCGTCTCGCTCACGGTCCTCTTCTTCGTTTTCCGTCTCTTGTACCATCGCTAAGGACC 368
Query 394 CAG-CTGTTGTCATGGCGGACTCGGAGAAGATTAAGGCCGCTGGATCTGATCCGACTATG 452
| | ||||| |||||||||| | | | |||||||||||||||||||||| |||
Sbjct 369 C-GACTGTTTTCATGGCGGA-T-----ACG---GAGGCCGCTGGATCTGATCCGACCATG 418
Query 453 TGGCAACGACCTGATTCATTCGGTCGTTTCGGGAAGTTTGGCGGCAAGTACGTCCCCGAA 512
|||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 419 TGGCAACGGCCTGATTCATTCGGTCGGTTCGGGAAGTTTGGCGGGAAGTATGTCCCCGAA 478
Query 513 ACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGAA 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGAA 538
Query 573 GATTTCCAGAGAGAATTAGCAGAGATCTTGAAAGACTACGTTGGTCGGGAAAGTCCTCTT 632
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 539 GATTTCCAGAGAGAATTGGCAGAGATCTTGAAAGACTATGTGGGTCGGGAAAGTCCTCTT 598
Query 633 TACTTTGCAGAGAGGCTCACGGAGCATTACCGCCGTGAAAACGGTGAAGGGCCGCTCATA 692
|||||||||||||||||||| |||||||||||||| |||||||| ||||| || ||||||
Sbjct 599 TACTTTGCAGAGAGGCTCACAGAGCATTACCGCCGAGAAAACGGGGAAGGACCCCTCATA 658
Query 693 TACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGCT 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGCT 718
Query 753 CAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAAACGAATTATTGCTGAGACAGGGGCTGGT 812
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 CAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAAACGGATTATTGCTGAGACAGGGGCTGGT 778
Query 813 CAACATGGTGTAGCCACAGCTACTGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCTAC 872
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 CAACATGGTGTAGCCACAGCTACCGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCTAC 838
Query 873 ATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCGGT 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCGGT 898
Query 933 GCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAGCT 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAGCT 958
Query 993 ATAAGGGATTGGGTGACCAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGGGT 1052
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATAAGGGATTGGGTGACAAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGGGT 1018
Query 1053 CCTCATCCTTATCCTATGATGGTCAGAGACTTTCACGCGGTGATTGGTAAAGAAACAAGG 1112
||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1019 CCTCATCCTTACCCTATGATGGTCAGGGACTTTCATGCCGTGATTGGTAAAGAAACAAGG 1078
Query 1113 AAACAAGCGATGGAGAAATGGGGCGGGAAGCCTGATGTTCTGGTTGCTTGTGTCGGTGGT 1172
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGACAAGCTATGGAGAAATGGGGCGGGAAGCCTGATGTTCTGGTTGCTTGTGTCGGTGGT 1138
Query 1173 GGTTCAAATGCTATGGGACTCTTCCATGAATTTGTCGATGACACAGAGGTTCGAATGATT 1232
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1139 GGTTCAAATGCCATGGGACTCTTCCATGAATTTGTCGATGACACAGAGGTTCGGATGATT 1198
Query 1233 GGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACATGCTGCCACATTGACAAAA 1292
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 GGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACACGCTGCCACATTGACAAAA 1258
Query 1293 GGAGATGTCGGTGTACTCCACGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGCCAA 1352
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGAGATGTCGGTGTACTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGCCAA 1318
Query 1353 ATCATTGAACCACACTCCATCAGTGCCGGATTGGACTACCCTGGAGTCGGACCTGAGCAT 1412
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1319 ATCATTGAACCACACTCCATCAGTGCCGGATTGGATTACCCTGGAGTCGGACCTGAGCAT 1378
Query 1413 AGTTTCCTTAAAGACGTGGGAAGGGCTGAATACTTTAGCGTTACTGATGAAGAAGCATTA 1472
||||||||||||||| ||||| ||||||| |||| ||||||||| ||||||||||| |||
Sbjct 1379 AGTTTCCTTAAAGACATGGGACGGGCTGAGTACTATAGCGTTACCGATGAAGAAGCCTTA 1438
Query 1473 GAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCATTGGAGACATCGCAC 1532
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1439 GAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCACTGGAGACATCGCAC 1498
Query 1533 GCATTGGCCCATCTGGAGAAGCTTTGTCCGACGTTACCTGATGGAGCCAGAGTGGTATTA 1592
|| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1499 GCGTTGGCCCATCTAGAGAAGCTTTGTCCGACGTTACCTGATGGAACCAGAGTGGTCTTA 1558
Query 1593 AACTTCAGTGGGAGAGGCGACAAGGATGTTCAGACTGCAATCAAGTATCTCGAAGTTTAA 1652
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1559 AACTTCAGTGGGAGAGGCGACAAGGATGTTCAGACTGCAATCAAATATCTCGAAGTTTAA 1618
Query 1653 AGAGTGTAGATTACTTTCATTTTCACACAGTGCTATTTCTTTTA--TGTAGTTTGTTAGT 1710
||||| |||||||||||||||||||| |||| |||||||| || ||||||||||||||
Sbjct 1619 AGAGT--AGATTACTTTCATTTTCACATAGTGATATTTCTTCTACATGTAGTTTGTTAGT 1676
Query 1711 TCTCCTTGCTTATGGTCGGGAATCCAAAAGTTTGGATCAAAGGGTTAA--GAAGAGAATA 1768
||| | ||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1677 TCT--T-GCTTATGGTCGAGAATCCAAAAGTTTGGATCAGAGGGTTAAAAGAAGAGAATA 1733
Query 1769 AGTGTTATGAATGTATCATATAAATAA-AA-A-TGTTCTATGGAACGTTTGATGTTCTTA 1825
| ||||||||||||||| ||||||||| || | ||||||||||||||| |||||||||||
Sbjct 1734 AATGTTATGAATGTATCCTATAAATAATAAGAATGTTCTATGGAACGTATGATGTTCTTA 1793
Query 1826 TAAGCAATTCGAACTGTTTTGTTCTTGAC 1854
|||||||||||||||||||||||||||||
Sbjct 1794 TAAGCAATTCGAACTGTTTTGTTCTTGAC 1822
> Ahg495562 jgi|Araly1|495562|fgenesh2_kg.8__1378__AT5G54810.1
Length=1610
Score = 1327 bits (718), Expect = 0.0
Identities = 1206/1435 (84%), Gaps = 59/1435 (4%)
Strand=Plus/Plus
Query 216 ATTCACTAAATGGCCA-CCGCAAGCACCGCTGCTACTTTCAGA----CC----C-TC--C 263
||||| | ||||| || || || |||||||||||||||||||| || | || |
Sbjct 11 ATTCAGT-AATGG-CAGCCTCAGGCACCGCTGCTACTTTCAGAGCCTCCGTTTCTTCAGC 68
Query 264 TCCGT-TTCAGCTTCTTCCGAATTAACCCATCTGAG---ATCACCCTCCAAA-CTCCCCA 318
||| | ||| |||||||| |||| |||||| |||| |||||||| |||| || | ||
Sbjct 69 TCCTTCTTCTTCTTCTTCCCAATTGACCCATTTGAGATCATCACCCTTCAAAGCT-CTCA 127
Query 319 AATTTACGCCTCTGCCATCGGCTCGCT-CACGGTCCTCTTCTTCGTTCTCCGTCTCCTGC 377
|||||||||||||||||||| |||||| || | || || | |||||||||||||||
Sbjct 128 AATTTACGCCTCTGCCATCGTCTCGCTCCA-AG---TCATC--C-TTCTCCGTCTCCTGC 180
Query 378 ACCATCGCTAAGGACCCAG-CTGTTGTCATGGCGGACTCGGAGAAGATTAAGGCCGCTGG 436
|| ||||| || ||||| | ||| | || | | | | | | |||| ||
Sbjct 181 ACTATCGCCAAAGACCC-GCCTG-T-TC-T--C--A-T-------G----A--CCGCCGG 218
Query 437 ATCTGATCCGACTATGTGGCAACGACCTGATTCATTCGGTC-GTTTCGGGAAGTTTGGCG 495
|||||| ||||| ||||||||||||| ||||| ||||||| |||| ||||||||||| |
Sbjct 219 ATCTGACCCGACCCTGTGGCAACGACCCGATTCGTTCGGTCGGTTT-GGGAAGTTTGGTG 277
Query 496 GCAAGTACGTCCCCGAAACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATT 555
| ||||| || || || || || |||||||| |||||||| |||||| | |||||||||
Sbjct 278 GGAAGTATGTACCTGAGACCCTTATGCACGCGCTCTCTGAGCTCGAATCCGCTTTCTATG 337
Query 556 CGCTCGCCACCGACGAAGATTTCCAGAGAGAATTAGCAGAGATCTTGAAAGACTACGTTG 615
| |||||||||||||| ||||||||||| || || |||| ||||||||||||||| || |
Sbjct 338 CTCTCGCCACCGACGATGATTTCCAGAGGGAGTTGGCAGGGATCTTGAAAGACTATGTGG 397
Query 616 GTCGGGAAAGTCCTCTTTACTTTGCAGAGAGGCTCACGGAGCATTACCGCCGTGAAAACG 675
|| ||||||||||||| || |||||||||||||| || ||||||||||| || || || |
Sbjct 398 GTAGGGAAAGTCCTCTGTATTTTGCAGAGAGGCTAACAGAGCATTACCGGCGCGAGAATG 457
Query 676 GTGAAGGGCCGCTCATATACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGA 735
| ||||||||||| ||||| | || ||||||||| |||||||||| |||||||||||||
Sbjct 458 GCGAAGGGCCGCTTATATATTTGAAGAGGGAAGACCTGAACCACACAGGTGCTCACAAGA 517
Query 736 TCAACAACGCTGTGGCTCAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAA-ACGAATTATT 794
| ||||| |||||||||||||| ||||| ||||||||| | || ||||| | | ||||||
Sbjct 518 TTAACAATGCTGTGGCTCAGGCACTTCTTGCCAAGCGTTTGGGGAAGAAGA-GGATTATT 576
Query 795 GCTGAGACAGGGGCTGGTCAACATGGTGTAGCCACAGCTACTGTGTGTGCACGTTTCGGT 854
||||||||||| || |||||||||||||| || ||||| ||||||||||| ||||| |||
Sbjct 577 GCTGAGACAGGAGCGGGTCAACATGGTGTGGCTACAGCCACTGTGTGTGCCCGTTTTGGT 636
Query 855 -TTGCAGTGCATTATCTACATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTT 913
| | |||| |||||||| |||||||||||||| |||||||||||||| || ||||||||
Sbjct 637 CTAG-AGTGTATTATCTATATGGGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTT 695
Query 914 CAGAATGCGTCTTCTCGGTGCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAA 973
||||||||| ||||| ||||| ||||| || ||||| |||||||||||||| || || ||
Sbjct 696 CAGAATGCGACTTCTTGGTGCCGAGGTGAGAGGAGTTCACTCTGGAACAGCGACATTGAA 755
Query 974 GGACGCAACTTCTGAAGCTATAAGGGATTGGGTGACCAATGTGGAGACTACACATTACAT 1033
||| || || |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct 756 GGATGCGACATCTGAAGCGATAAGAGATTGGGTGACAAATGTTGAGACTACCCATTACAT 815
Query 1034 ATTGGGATCCGTTGCGGGTCCTCATCCTTATCCTATGATGGTCAGAGACTTTCACGCGGT 1093
||||||||| || ||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 816 ATTGGGATCTGTGGCGGGTCCTCATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGT 875
Query 1094 GATTGGTAAAGAAACAAGGAAACAAGCGATGGAGAAATGGGGCGGGAAGCCTGATGTTC- 1152
|||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||| ||
Sbjct 876 GATTGGTAAAGAAACAAGGAGACAAGCGTTGGAGAAATGGGGTGGGAAGCCGGATG-TCT 934
Query 1153 TGGTTGCTTGTGTCGGTGGTGGTTCAAATGCTATGGGACTCTTCCATGAATTTGTCGATG 1212
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 935 TGGTGGCTTGTGTCGGTGGTGGTTCAAACGCTATGGGACTCTTCCATGAATTTGTAAATG 994
Query 1213 ACACAGAGGTTCGAATGATTGGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAAC 1272
|||||||||| || ||||| ||||||||||| || ||||| ||||||||||| |||||||
Sbjct 995 ACACAGAGGTCCGGATGATCGGTGTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAAC 1054
Query 1273 ATGCTGCCACATTGACAAAAGGAGATGTCGGTGTACTCCACGGAGCTATGAGTTACTTGC 1332
| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1055 ACGCTGCTACATTGACAAAGGGAGATGTCGGTGTCCTCCATGGAGCTATGAGTTACTTGC 1114
Query 1333 TGCAAGATGATGATGGCCAAATCATTGAACCACACTCCATCAGTGCCGGATTGGACTACC 1392
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1115 TGCAAGATGATGATGGACAAATCATTGAACCACACTCCATCAGTGCAGGATTGGACTACC 1174
Query 1393 CTGGAGTCGGACCTGAGCATAGTTTCCTTAAAGACGTGGGAAGGGCTGAATACTTTAGCG 1452
||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||||
Sbjct 1175 CTGGAGTCGGACCCGAGCACAGTTTTTTTAAAGACATGGGACGGGCTGAATACTATAGCA 1234
Query 1453 TTACTGATGAAGAAGCATTAGAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCC 1512
| || ||||| ||||| || ||||| |||||||||||||| ||||| |||||||| || |
Sbjct 1235 TAACCGATGAGGAAGCGTTGGAAGCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTC 1294
Query 1513 CGGCATTGGAGACATCGCACGCATTGGCCCATCTGGAGAAGCTTTGTCCGACGTTACCTG 1572
| ||| | ||||| || |||||| | || | || |||||||| ||||| || ||| | |
Sbjct 1295 CAGCACTCGAGACCTCACACGCACTAGCTTACCTCGAGAAGCTGTGTCCCACATTATCGG 1354
Query 1573 ATGGAGCCAGAGTGGTATTAAACTTCAGTGGGAGAGGCGACAAGGATGTTCAGAC 1627
| ||| | ||||| ||||| |||||||| || ||||| || || |||||||||||
Sbjct 1355 ACGGAACGAGAGTAGTATTGAACTTCAGCGGAAGAGGAGATAAAGATGTTCAGAC 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5