BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27080.2
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492089 jgi|Araly1|492089|fgenesh2_kg.7__1522__AT4G27080.1 2660 0.0
> Ahg492089 jgi|Araly1|492089|fgenesh2_kg.7__1522__AT4G27080.1
Length=1742
Score = 2660 bits (1440), Expect = 0.0
Identities = 1562/1621 (96%), Gaps = 8/1621 (0%)
Strand=Plus/Plus
Query 282 GAAAATCCCGAGGGATTTGACAGAGGCGTCTCTGTCTGGTGCTGGATTGTCCATTATAGC 341
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 125 GAAAATCCCGAGGGATTTGACAGAAGCGTCTCTGTCTGGTGCTGGATTGTCCATTATAGC 184
Query 342 AGCCCTCTCTATGATATTTCTATTTGGAATGGAGTTGAATAATTATTTGGCTGTCAGCAC 401
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 185 AGCCCTCTCTATGATATTTTTATTTGGAATGGAATTGAATAATTATTTGGCTGTCAGCAC 244
Query 402 TTCCACATCGGTCATTGTTGACAGGAGCGCTGACGGAGACTTCTTGCGCTTAGATTTTAA 461
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 245 TTCCACATCGGTCATTGTTGATAGGAGCGCTGACGGAGACTTCTTGCGCTTAGATTTTAA 304
Query 462 TATAAGCTTCCCGTCACTTTCATGTGAATTCGCATCTGTGGATGTCAGTGATGTATTAGG 521
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 305 CATAAGCTTCCCGTCACTTTCATGTGAATTCGCATCTGTGGATGTCAGTGACGTATTAGG 364
Query 522 AACTAACAGGCTAAATGTAACAAAGACAATTCGGAAGTTTTCTATTGATTCGAATATGAG 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AACTAACAGGCTAAATGTAACAAAGACAATTCGGAAGTTTTCTATTGATTCGAATATGAG 424
Query 582 ACCCACTGGTTCTGAGTTTCATGCCGGGGAAGTTTTATCACTCATTAATCATGGAGATGA 641
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 425 ACCCACTGGTTCTGAGTTTCACGTCGGGGAAGTTTTATCGCTCATTAATCATGGAGATGA 484
Query 642 AACTGGTGAAGAAATAGTTGAAGATTCGGTACCACTTACTGGACGCAACTTTGACACATT 701
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 485 AACTGGTGAAGAAGTAGTTGAAGATTCGGTACCACTTACTGGGCGCAACTTTGACACATT 544
Query 702 TACACATCAATTTCCAATCTTGGTTGTTAATTTCTATGCTCCGTGGTGCTATTGGTGTAA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TACACATCAATTTCCAATCTTGGTTGTTAATTTCTATGCTCCGTGGTGCTATTGGTGTAA 604
Query 762 TCTCCTGAAACCATCATGGGAGAAAGCAGCTAAACAGATAAAAGAGAGATATGATCCAGA 821
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 605 TCTCCTGAAACCATCATGGGAGAAAGCAGCGAAACAAATAAAAGAGAGATATGATCCAGA 664
Query 822 AATGGACGGACGTGTTATTTTGGCAAAAGTTGACTGCACCCAAGAAGGTGATCTCTGTCG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AATGGACGGACGTGTTATTTTGGCAAAAGTTGACTGCACCCAAGAAGGTGATCTCTGTCG 724
Query 882 GAGGAATCATATACAAGGGTATCCATCCATTCGCATTTTCCGCAAAGGCAGTGATCTTAA 941
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 725 GAGGAATCACATACAAGGGTATCCATCCATTCGTATTTTCCGCAAAGGCAGTGATCTTAA 784
Query 942 GGATGACAATGCACACCACGACCATGAATCCTACTATGGAGATCGTGATACGGAAAGCTT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GGATGACAATGCACACCACGACCATGAATCCTACTATGGAGATCGTGATACGGAAAGCTT 844
Query 1002 AGTGAAGATGGTGGTGAGTCTGGTTGAACCAATTCATCTAGAGCCCCATAATCTAGCATT 1061
||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 845 AGTGAAGATGGTGGTTAGTGTGGTTGAACCAATCCATCTAGAGCCCCATAATCTAGCATT 904
Query 1062 GGAGGACAAATCAGACAATTCATCGAGAACTCTAAAAAAGGCACCTTCTACAGGAGGATG 1121
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 905 GGAGGACAAATCAGACAATTCATCGAGAACTTTAAAAAAGGCACCTTCTACAGGAGGATG 964
Query 1122 TCGAGTTGAAGGATACATGCGTGTGAAGAAGGTTCCAGGCAATTTAATGGTTTCAGCTCG 1181
||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 965 CCGAATTGAAGGATACATGCGTGTAAAGAAGGTTCCAGGCAACTTAATGGTTTCAGCTCG 1024
Query 1182 CTCGGGATCTCATTCCTTTGATTCTTCTCAGATGAATATGTCACATGTTGTTAACCATCT 1241
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1025 CTCGGGATCTCATTCCTTTGATTCTTCTCAAATGAATATGTCCCATGTTGTTAACCATCT 1084
Query 1242 ATCCTTTGGGCGGAGGATTATGCCTCAGAAATTTTCGGAGTTTAAGCGCTTGTCACCTTA 1301
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1085 ATCATTTGGGCGGAGGATTATGCCTCAGAAATTTTCTGAGTTAAAGCGCTTGTCACCTTA 1144
Query 1302 TCTCGGCCTAAGCCACGACCGTTTAGACGGCCGGTCCTTCATAAACCAACGAGATCTCGG 1361
||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 1145 TCTCGGCCTAAGCCATGACCGTTTGGACGGCCGGCCCTTCATAAACCAACGTGATCTCGG 1204
Query 1362 CCCAAACGTTACCATTGAGCATTATCTTCAAATAGTAAAGACTGAGGTAGTGAAAAGCAA 1421
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1205 CCCAAATGTTACCATCGAGCATTATCTTCAAATAGTAAAGACAGAGGTAGTGAAAAGCAA 1264
Query 1422 TGGACAGGCATTGGTTGAGGCGTATGAGTACACAGCACATAGCAGCGTTGCTCATAGTTA 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TGGACAGGCATTGGTTGAGGCGTATGAGTACACAGCACATAGCAGCGTTGCTCATAGTTA 1324
Query 1482 CTATTTACCAGTGGCCAAGTTTCACTTTGAGCTCTCACCGATGCAGGTTCTCATAACGGA 1541
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1325 CTATTTACCAGTTGCCAAGTTTCACTTTGAGCTATCACCGATGCAGGTTCTCATAACGGA 1384
Query 1542 AAACTCCAAGTCCTTCTCACATTTCATCACCAACGTATGCGCCATTATTGGTGGTGTCTT 1601
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1385 AAACTCCAAGTCCTTCTCACATTTCATCACCAACGTATGCGCCATTATCGGTGGTGTCTT 1444
Query 1602 CACGGTGGCCGGAATCTTGGATTCTATTCTCCATCACTCCATGACACTCATGAAAAAGAT 1661
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1445 CACGGTGGCCGGAATCTTGGATTCTATTCTCCACCACTCCATGACACTGATGAAAAAGAT 1504
Query 1662 AGAACTTGGTAAAAACTTCTGAAGCTC-CCTAAGGGTTTTATTTCGTTTTCCTCTGTAAC 1720
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1505 AGAACTTGGTAAAAACTTCTGAAGCTCTCCTAAGGGTTTTATTTCGTTTTCCTCTGTAAC 1564
Query 1721 GAGTCAGAAATTTTTGCCCTAGT-TATAC--C-AGACGTCACTTAAATAATTCGGTTATA 1776
|||||||||| ||||||| || | || || | ||||||||| ||||||||| ||||||
Sbjct 1565 GAGTCAGAAAGTTTTGCCATA-TATACACAACCAGACGTCACCAAAATAATTCAGTTATA 1623
Query 1777 TATATTCACAAACTGTTATCCTTTTGAACATATATAAGTATTATCGATGTCTCTGAAGTC 1836
| | ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1624 T-T-TTCGCAAACTGTTGTCCTTTTGAACATATATAAGTATTAGCGATGTCTCTGAAGTC 1681
Query 1837 TTTGGGAGTTTTAGTAGAACAAATTGTTATCACTTAAATCAGGGGAATTTACTTCCAAAT 1896
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1682 TTTGGGAGTTTTAGTAAAACAAATTGTTATCACTTCAATCAGGGGAATTTACTTCCAAAT 1741
Query 1897 T 1897
|
Sbjct 1742 T 1742
Score = 191 bits (103), Expect = 2e-47
Identities = 118/125 (94%), Gaps = 1/125 (1%)
Strand=Plus/Plus
Query 1 CACAAGGGAGGTGCTTCGTCCTCGAAGCTTTTAGAACTTAGCCAAGCAGCTGTTGTTTCT 60
|||||||||||||||||||||||| |||||| ||||| ||||||||||| | ||||||||
Sbjct 1 CACAAGGGAGGTGCTTCGTCCTCGGAGCTTTGAGAAC-TAGCCAAGCAGTTCTTGTTTCT 59
Query 61 TAGTTGACTCCCTCTCCGACGAAAATGGTGTCCACGAGCAAGATCAAATCCGTTGATTTC 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CAGTTGACTCCTTCTCCGACGAAAATGGTGTCCACGAGCAAGATCAAATCCGTTGATTTC 119
Query 121 TATAG 125
|||||
Sbjct 120 TATAG 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5