BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27090.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492088 jgi|Araly1|492088|fgenesh2_kg.7__1521__AT4G27090.1 1096 0.0
Ahg906855 jgi|Araly1|906855|Al_scaffold_0003_3983 383 1e-105
> Ahg492088 jgi|Araly1|492088|fgenesh2_kg.7__1521__AT4G27090.1
Length=665
Score = 1096 bits (593), Expect = 0.0
Identities = 641/664 (97%), Gaps = 3/664 (0%)
Strand=Plus/Plus
Query 1 CCTCTGCTGTCGCTCGTCTACATTTACACTCGGAGCTT--AGACCTTCCAATCTACCGGC 58
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CCTCTGCTGTCGCTCGTCTACATTTACACTCGGAGCTTAGAGACCTTCCAATCTACCGGC 60
Query 59 GGCGAAAATGGGTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTACGG 118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCGAAAATGGTTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTACGG 120
Query 119 AGAAGATCATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACAGAGCTTTGGT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGATCATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACAGAGCTTTGGT 180
Query 179 GGATGCCCCTGATATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCTCTTACCGATAT 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGACGCCCCTGATATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCTCTTACCGATAT 240
Query 239 TGTCATTGACATCAACCGTGTGCCAAAGAAGAAGGCTTTGATCGAGGCAATGGAAAAGGC 298
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CGTGATTGACATCAACCGAGTGCCAAAGAAGAAGGCTTTGATCGAGGCAATGGAGAAGGC 300
Query 299 TGATGTGAAGAACAAGTGGGAGAAAAGCTCATGGGGTAGGAAGCTTATCGTGCAGAAACG 358
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 301 TGATGTGAAGAACAAGTGGGAGAAGAGCTCATGGGGTAGGAAGCTTATTGTGCAGAAACG 360
Query 359 TAGGGCTAACCTTAACGACTTTGATAGGTTCAAGATCATGTTGGCCAAGATCAAGAAAGC 418
|||||| ||||| || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TAGGGCCAACCTCAATGATTTTGATAGGTTCAAGATCATGTTGGCCAAAATCAAGAAAGC 420
Query 419 TGGTGTTGTCAGGCAAGAGCTTGCAAAACTCAAGAAGGAGATCACTGCCTGATCAAATAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGTGTTGTCAGGCAAGAGCTTGCAAAACTCAAGAAGGAGATCACTGCCTGATCAAATAT 480
Query 479 TATCTACAATTCTGTTGTCTTTCTTTTTTGATTTTGGATTCGGAAATTAGTGTTTTTGGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCTACAATTCTGTTGTCTTTCTTTTTTGATTTTGGATTCGGAAATTAGTGTTTTTGGA 540
Query 539 ACTATCAATATCAGTATGTGCTCAATTATCAGACATTATTCAAGTTTGAAACCTTGTTTG 598
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 541 ACTATCAACATCAGTATGTGCTCAATTATCCGACGTTATTCAAGTTTGAAACCTTGTTTG 600
Query 599 CAAAACTCAAAGTTTTTTGTTCTTTTGATCTTAGTCTTATTTTCGTTTATATGGTTCTAT 658
|||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 601 AAAAACTCAAAGTTTTT-GTTCTTTTGATCTTAGTCTTACTTTCTTTTCTATGGTTCTAT 659
Query 659 GTTA 662
||||
Sbjct 660 GTTA 663
> Ahg906855 jgi|Araly1|906855|Al_scaffold_0003_3983
Length=405
Score = 383 bits (207), Expect = 1e-105
Identities = 344/410 (84%), Gaps = 10/410 (2%)
Strand=Plus/Plus
Query 66 ATGGGTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTACGGAGAAGAT 125
|||||||| ||||| | ||| ||||| |||||||| || || || |||||||| ||||||
Sbjct 1 ATGGGTTTTAAGAGATTCGTGGAGATTGGGAGAGTGGCGCTCGTTAACTACGGCGAAGAT 60
Query 126 CATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACAGAGC-TTTGGTGGATGC 184
| ||||||||||| ||||||||||| || || ||||| ||||| || || ||||||||
Sbjct 61 TACGGAAAGCTCGTGGTTATCGTCGATGTAGTCGACCAAAACAGGGCACTT-GTGGATGC 119
Query 185 CCCTGATATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCTCTTACCGATATTGTCAT 244
|||||| |||||||| ||||||||||| || |||||||||||||| || || ||||| ||
Sbjct 120 CCCTGACATGGAGAGAATCCAGATGAATTTGAAGAGGTTGTCTCTAACTGACATTGTGAT 179
Query 245 TGACATCAACCGTGTGCCAAAGAAGAAGGC-TTTGATCGAGGCAATGGAAAAGGCTGATG 303
||| |||||| | ||||| |||||||| || |||||| ||||||||||| ||||||||||
Sbjct 180 TGATATCAACAGAGTGCCCAAGAAGAA-GCATTTGATTGAGGCAATGGAGAAGGCTGATG 238
Query 304 TGAAGAACAAGTGGGAGAAAAGCTCATGGGGTAGGAAGCTTATCGTGCAGAA-ACGTAGG 362
||||||||||||||||||| || |||||||||||||| ||||| |||||||| | | ||
Sbjct 239 TGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGA-GAAGA 297
Query 363 GCTA-ACCTTAACGACTTTGATAGGTTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGG 421
||| || | || || ||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 298 GCTTCAC-TCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGAGGGCTGG 356
Query 422 TGTTGTCAGGCAAGAGCTTGCAAAACTCAAGAAGG-AGATCACTGCCTGA 470
| |||| ||||| |||||||| || || || |||| ||| | |||| |||
Sbjct 357 TATTGTGAGGCAGGAGCTTGCTAAGCTAAA-AAGGGAGACCGCTGCTTGA 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5