BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27100.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492087 jgi|Araly1|492087|fgenesh2_kg.7__1520__AT4G27100.1 2242 0.0
Ahg495559 jgi|Araly1|495559|fgenesh2_kg.8__1375__AT5G54780.1 1238 0.0
> Ahg492087 jgi|Araly1|492087|fgenesh2_kg.7__1520__AT4G27100.1
Length=1557
Score = 2242 bits (1214), Expect = 0.0
Identities = 1321/1373 (96%), Gaps = 6/1373 (0%)
Strand=Plus/Plus
Query 258 tttttttCCCGGG---AAAGTTTGATAGAGATGTGGGGAGGCGCAGGTGAGCCAGCAGAT 314
||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 187 TTTTTTTCCCGGGAAAAAAGTTTGATAGA-ATGTGGGGAGGCGCAGCTGAGCCAGCAGAT 245
Query 315 TCTTACTACCAAGTTCGTCCTGAGTGCACCGATGTCCCCAAGACCAGATTCAAAATCAAG 374
||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 246 TCTTATTACCAAGTTCGTCCCGAGTGCACCGATGTCCCCAAGACCAGATTCAGAATCAAG 305
Query 375 CCTGGTAAAACTCTAAGTGTAAGAAAATGGCAGGCTGTATTTGTACAAGAAGGGTCTCTC 434
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 306 CCTGGCAAAACTCTAAGTGTAAGAAAATGGCAGTCTGTATTTGTACAAGAAGGGTCTCTT 365
Query 435 CATATTGGCAAGACTCTAAGACGCATCCGAAGAGGGGGAATCCATCCATCAATTAGAGGC 494
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 366 GATATTGGCAAGACTCTAAGACGAATCCGAAGAGGGGGAATCCATCCATCAATTAGAGGC 425
Query 495 GAAGTATGGGAATTCCTACTTGGTTGTTATGACCCAATGAGCACATTCGAAGAAAGAGAG 554
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 426 GAAGTATGGGAATTCCTACTTGGTTGTTATGACCCGATGAGCACATTCGAAGAAAGAGAG 485
Query 555 CAAATTCGACAACGCAGAAGATTGCAGTATGCTTCTTGGAAGGAAGAGTGTAAGCAAATG 614
|||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 486 CAAATTCGGCAACGCAGAAGACTGCAGTATGCTTCTTGGAAGGAGGAGTGTAAGCAAATG 545
Query 615 TTTCCTGTCATTGGAAGTGGAAGATTTACT-ACCGCACCTGTAATTACTGAAAATGGTCA 673
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||
Sbjct 546 TTTCCTGTCATTGGAAGTGGAAGATTTA-TGACCGCACCTGTAATTTCTGAAAATGGCCA 604
Query 674 ACCCAACTATGATCCTCTTGTACTTCAGGAAATAAATTTAGGTACAAACTCAAATGGTTC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ACCCAACTATGATCCTCTTGTACTTCAGGAAATAAATTTAGGTACAAACTCAAATGGTTC 664
Query 734 AGttttttttAAAGAGCTCACAAGTCGTGGACCTCTTGATaaaaaaaTTATCCAATGGCT 793
|| ||||||||||||||||||||||||||||||||| ||||| ||| ||| ||| |||||
Sbjct 665 AGATTTTTTTAAAGAGCTCACAAGTCGTGGACCTCTCGATAAGAAAGTTACCCAGTGGCT 724
Query 794 GCTAACACTTCACCAGATAGGTCTTGATGTGAACCGTACAGACAGGGCCTTGGTATTTTA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GCTAACACTTCACCAGATAGGTCTTGATGTGAACCGTACAGACAGGGCCTTGGTATTTTA 784
Query 854 TGAGAAAAAGGAGAACTTATCGAAGCTCTGGGATATTCTGTCTGTTTACGCCTGGATAGA 913
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 785 TGAGAAAAAGGAGAACTTATCGAAGCTCTGGGATATTCTGTCTATTTACGCCTGGATAGA 844
Query 914 CAACGATGTCGGGTATTGTCAAGGAATGAGTGATCTTTGTTCCCCAATGATTATTCTTCT 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CAACGATGTCGGGTATTGTCAAGGAATGAGTGATCTTTGTTCCCCAATGATTATTCTTCT 904
Query 974 TGAAGACGAAGCTGATGCATTTTGGTGTTTTGAACGGCTCATGCGTCGATTGCGAGGAAA 1033
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 905 TGAAGATGAAGCTGATGCCTTTTGGTGTTTTGAACGGCTTATGCGTCGATTGCGAGGAAA 964
Query 1034 TTTCCGTAGTACCGGGAGATCTGTTGGAGTTGAAGCTCAACTTACTCATTTGTCTTCAAT 1093
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 965 TTTCCGTAGCACCGGGAGATCTGTTGGAGTTGAAGCTCAACTTACTCATTTGTCTACGAT 1024
Query 1094 TACTCAGGTTGTTGACCCCAAACTTCACCAACATCTAGATAAACTTGGGGGAGGTGACTA 1153
||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1025 TACTCAGATTGTTGACCCCAAACTTCACCAACATCTAGATAAACTGGGGGGAGGCGACTA 1084
Query 1154 TCTCTTTGCCATCCGGATGCTAATGGTTCAATTCCGAAGAGAATTCTCATTTTGCGACTC 1213
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1085 TCTCTTTGCCATTCGGATGCTAATGGTTCAATTCCGAAGAGAATTCTCGTTTTGCGACTC 1144
Query 1214 TCTGTACCTTTGGGAGATGATGTGGGCCCTCGAGTATGACCCCGATCTTTTTTATGTATA 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TCTGTACCTTTGGGAGATGATGTGGGCCCTCGAGTATGACCCCGATCTTTTTTATGTATA 1204
Query 1274 TGAGGCGCATCAATGCGGGAATGAGAAAACAGAAGGGTTAAAAGGTAAACCGAAGTCAAT 1333
|||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1205 TGAGGCACATCAATGCGGGAGTGAGAAAACCGAAGGGTTAAAAGGTAAACCGAAGTCAAT 1264
Query 1334 TAAGCAATGTGGAAAGTATGAGAGGCAAAACATGAGGAATGGAGGAAAAAGTGCAGAAGG 1393
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1265 TAAGCAATGTGGAAAGTATGAGAGGCAAAACATGAGGAATGGAGGGAAAAGTGCGGAAGG 1324
Query 1394 TCCTTTACCTATATCGGTATTTCTAGTGGCCAGTGTCTTGAAAGACAAGAGTTATAAGCT 1453
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TCCTTTGCCTATATCGGTATTTCTAGTGGCCAGTGTCTTGAAAGACAAGAGTTATAAGCT 1384
Query 1454 AATGACTGAAGCTCGTGGACTCGACGATGTTGTTAAGATACTTAACGATACGACTGGGAA 1513
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1385 AATGACTGAAGCTCGTGGACTCGACGATGTTGTTAAGATACTTAACGACATGACTGGGAA 1444
Query 1514 CTTGGATGCCaaaaaaaCATGTTCTGGAGCCATAAAAATTCACAAGAGATATCTAAGAAA 1573
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1445 CTTGGATGCCAAGAAAACATGTTCTGGGGCCATAAAAATTCACAAGAGATATCTAAGAAA 1504
Query 1574 GGTTATTTCTATGTTTCTTTGATCTGCCTGGGCTTCTGTCTCTCTCAAAGTTT 1626
|||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 1505 GGTTATTTCTATGTTTTTTTGATCTGTCTGGGCTTGTGTCTCTCTCAAAGTTT 1557
> Ahg495559 jgi|Araly1|495559|fgenesh2_kg.8__1375__AT5G54780.1
Length=1747
Score = 1238 bits (670), Expect = 0.0
Identities = 1093/1293 (85%), Gaps = 45/1293 (3%)
Strand=Plus/Plus
Query 306 CCAGCAGATTCTTACTACCAAG-TTCGTCCTGAGTGCACCGATGTCCCCAAGACCAGATT 364
|||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| |||
Sbjct 194 CCAGCAGATTCTTATTACC-AGATTCGTCCTGAGTGCACTGATGTCCCCAATACCAAATT 252
Query 365 CAAAATCAAGCCTGGTAAAACTCTAAGTGTAAGAAAATGGCAGGCTGTATTTGTA-CAAG 423
||| ||||| |||||||||||||||||||||||||||||||| |||| |||| | || |
Sbjct 253 CAAGATCAAACCTGGTAAAACTCTAAGTGTAAGAAAATGGCAAGCTGCATTTACAACA-G 311
Query 424 AAGGGTCTC-TCCATATTGGCAAGACTCTAAG-ACGCATCCGAA-GAGGGGGAATCCATC 480
|||||| || || ||||||||||||||||||| | | |||| || ||||||| |||||||
Sbjct 312 AAGGGT-TCCTCGATATTGGCAAGACTCTAAGTA-GAATCC-AACGAGGGGGGATCCATC 368
Query 481 CATCAATTAGAGGCGAAGTATGGGAATTCCTACTTGGTTGTTATGACCCAATGAGCACAT 540
||||||||||||| ||||| ||||||||| |||||||||||||||| |||| ||||||||
Sbjct 369 CATCAATTAGAGGAGAAGTCTGGGAATTCTTACTTGGTTGTTATGATCCAAAGAGCACAT 428
Query 541 TCGAAGAAAGAGAGCAAATTCGACAACGCAGAAGATTGCAGTATGCTTCTTGGAAGGAAG 600
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 429 TTGAAGAAAGAGAGCAAATCCGACAACGTAGAAGATTGCAGTATGCTTCTTGGAAGGAGG 488
Query 601 AGTGTAAGCAAATGTTTCCTGTCATTGGAAGTGGAAGATTTACTACCGCACCTGTAATTA 660
| ||||| ||||||||||| ||||| |||||||| |||| | |||||||||||||||||
Sbjct 489 AATGTAAACAAATGTTTCCCGTCATCGGAAGTGGTGGATTCATTACCGCACCTGTAATTA 548
Query 661 CTGAA-AATGGTCAACCCAACTATGATCCTCTTGTACTTCAGGAAATAAATTTAGGTACA 719
| || || ||| |||||| || |||||| |||| || || |||| |||||||||| ||
Sbjct 549 CC-AACAAGGGTGAACCCATTTACGATCCTATTGTTCTACAAGAAACAAATTTAGGTGCA 607
Query 720 AACTCAAATGGTTCAGttttttttAAAGAGCTCACAAGTCGTGGACCTCTTG-ATaaaaa 778
|| | ||||| | ||| || ||||| || |||| || |||||| ||| | || ||
Sbjct 608 AA-T-----GGTTCGGATTTCTTCAAAGATCTTGCAAGCCGCGGACCT-TTGGACAAGAA 660
Query 779 aaTTATCCAATGGCTGCTAACACTTCACCAGATAGGTCTTGATGTGAACCGTACAGACAG 838
| |||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 661 AGTTATTCAATGGCTGTTAACACTTCACCAAATAGGTCTTGATGTAAACCGTACAGATAG 720
Query 839 GGCCTTGGTATTTTATGAGAAAAAGGAGAACTTATCGAAGCTCTGGGATATTCT-GTCTG 897
| | |||||||| ||||||||||||||||| || || ||||| ||||| ||||| | ||
Sbjct 721 GACTTTGGTATTCTATGAGAAAAAGGAGAATTTGTCTAAGCTTTGGGACATTCTTG-CTC 779
Query 898 TTTACGCCTGGATAGACAACGATGTCGGGTATTGTCAAGGAATGAGTGATCTTTGTTCCC 957
||||||| ||||||||||| || || || ||||| |||||||||||||||||||||||||
Sbjct 780 TTTACGCGTGGATAGACAATGACGTTGGTTATTGCCAAGGAATGAGTGATCTTTGTTCCC 839
Query 958 CAATGATTATTCTTCTTGAAGACGAAGCTGATGCATTTTGGTGTTTTGAACGGCTCATGC 1017
| |||||||| ||||||||||||||||||||||| ||||||||||| |||||| | ||||
Sbjct 840 CTATGATTATGCTTCTTGAAGACGAAGCTGATGCTTTTTGGTGTTTCGAACGGTTGATGC 899
Query 1018 GTCGATTGCGAGGAAATTTCCGTAGTAC-CGGG-AGATCTGTTGGAGTTGAAGCTCAACT 1075
| ||||||||||| ||||| || | || |||| ||||| |||||||| ||||| || ||
Sbjct 900 GCCGATTGCGAGGGAATTTTCGG-G-ACACGGGGAGATCAGTTGGAGTCGAAGCACAGCT 957
Query 1076 TACTCATTTGTCTTCAATTACTCAGGTTGTTGACCCCAAACTTCACCAACATCT-AGATA 1134
|||||||||| ||||||| |||||| || ||||||||||||||||||| || || ||| |
Sbjct 958 TACTCATTTGGCTTCAATCACTCAGATTATTGACCCCAAACTTCACCATCA-CTTAGAGA 1016
Query 1135 AACTTGGG-GGAGGTGACTATCTCTTTGCCATCCGGATGCTAATGGTTCAATTCCGAAGA 1193
| |||||| || ||||||||||||||||| || || ||| |||||||||| |||||||||
Sbjct 1017 A-CTTGGGTGGTGGTGACTATCTCTTTGCGATTCGAATGATAATGGTTCAGTTCCGAAGA 1075
Query 1194 GAATTCTCATTTTGCGACTCTCT-GTACCTTTGGGAGATGATGTGGGCCCTCGAGTATGA 1252
|||||||| ||||| ||||| || |||||||||||||||||||||||| | ||||||||
Sbjct 1076 GAATTCTCTTTTTGTGACTC-CTTGTACCTTTGGGAGATGATGTGGGCATTAGAGTATGA 1134
Query 1253 CCCCGATCTTTTTTATGTATATGAGGCGCATCAATGCG-GGAATGAGAAAACAGAAGGGT 1311
||| || | | || | ||||||||| || ||||| || || | |||| ||| ||||| |
Sbjct 1135 CCCAGAAATGTATTCTCTATATGAGGAGCCTCAATTCGAGGGA-GAGAGAACCGAAGGTT 1193
Query 1312 --TA-AAAGGTAAACCGAAGTCAATTAAGCAATGTGGAAAGTATGAGAG-GCAAAACATG 1367
| ||||||||||||||||| || || |||||||| ||||| ||||| | | ||||||
Sbjct 1194 CCTCCAAAGGTAAACCGAAGTCGATAAACCAATGTGGGAAGTACGAGAGAG-AGAACATG 1252
Query 1368 AGGAATGGAGGAAAAAGTGCAGAAGGTCCTTTACCTATATCGGTATTTCT-AGTGGCCAG 1426
| ||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||||| ||
Sbjct 1253 AAGAATGGAGGGAAAAGTGCAGAAGGTCCTTTGCCTATTTCGGT-TTTCTTAGTGGCTAG 1311
Query 1427 TGTCTTGAAAGACAAGAGTTATAAGCTAATGACTGAAGCTCGTGGACTCGACGATGTTGT 1486
||| |||||||||||||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 1312 TGTTTTGAAAGACAAGAGTTCCAAGCTAATGACAGAAGCTCGAGGACTTGATGACGTTGT 1371
Query 1487 TAAGATACTTAA-CGATACGACTGGGAACTTGGATGCCaaaaaaaCATGTTCTGGAGCCA 1545
||||| ||||| ||| | || || ||||||||||| || ||| | ||| |||| || |
Sbjct 1372 AAAGAT-CTTAAACGACATAACCGGAAACTTGGATGCTAAGAAAGCCTGTACTGGTGCAA 1430
Query 1546 TAAAAATTCACAAGA-GATATCTAAGAAAGGTT 1577
| ||| ||||||||| | ||||||| |||||||
Sbjct 1431 TGAAACTTCACAAGAAG-TATCTAAAAAAGGTT 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5