BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27110.1
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945347 jgi|Araly1|945347|scaffold_701576.1 3243 0.0
> Ahg945347 jgi|Araly1|945347|scaffold_701576.1
Length=2047
Score = 3243 bits (1756), Expect = 0.0
Identities = 1953/2050 (95%), Gaps = 6/2050 (0%)
Strand=Plus/Plus
Query 12 ACTTGGGAAACACGATAGAGATGAAGAAGCT-CCGTTACGTCCATTTAAACCTCCTTCTC 70
||||||||||||||||||||||||||||| | || |||||||||| ||||||||||||||
Sbjct 1 ACTTGGGAAACACGATAGAGATGAAGAAGATACC-TTACGTCCATCTAAACCTCCTTCTC 59
Query 71 CTTCTATTACCTCTAATCAATCTTCAGTTTCCGACATTATCATTGGCTCAAGACTACGAT 130
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTTCTATTACCTCTGATCAATCTTCAGTTTCCGACATTATCATTGGCTCAAGACTACGAT 119
Query 131 GAACCAAAGAAGGATGATACTCCACCGCCAGGTCTGGCCCGTTGCAACGGAGTTTACATG 190
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 120 GAACCAAAGAAGGATGATACTCCACCGCCAGGCCTTGCCCGTTGCAACGGAGTTTACATG 179
Query 191 TCTTACAGTTCCGGTGGCCGAGAAAAGTTGTATCCTCGCACCACAAACGCGACTGCTCAA 250
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 180 TCTTACAGTTCCGGCGGCCGCGAAAAGTTGTATCCTCGCACCACAAACGCGACGGCTCAA 239
Query 251 GCTTGGTCTTTTAAATCAACGGCCATGATCGTGAACACTGGTATCGAAGAGGTCAAAGGT 310
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GCTTGGTCGTTTAAATCAACGGCCATGATCGTGAACACCGGTATCGAAGAGGTCAAAGGC 299
Query 311 TGGCAAATGTTCGTAGGGTTTCATCACAGAGAGATCATCGTTTCCGCGACTGGAGCTGTC 370
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TGGCAAATGTTCGTAGGGTTTCATCACAGAGAGATCATCGTTTCCGCGACCGGAGCTGTC 359
Query 371 TCATCTGACGGTGACTTCCCGGTCGATGCAACCAACGGTACTACGTTTATCGGGTCTCAG 430
||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||| |
Sbjct 360 TCATCTGACGGTGACTTTCCTGTCGATGCAACCAACGGGACTACGTTTATAGGGTCTCCG 419
Query 431 AATACGGACCTAAAGACCTCGATCCTGACAGCTGGCGATTACACTCAGATCTCGACCAAT 490
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 420 AACACGGATCTAAAGACCTCAATCCTGACAGCTGGCGATTACACTCAGATCTCAACCAAT 479
Query 491 ATCGAGATAACCGGAACGGTTTTTGGCGGGAAAGGTACAGCTACGCCGATGCCGAAATCG 550
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |
Sbjct 480 ATCGAGATAACCGGAACGGTTTTCGGCGGGAAAGGTACGGCTACGCCAATGCCGAAAACC 539
Query 551 ATCAAGCTCACAAACGATGGATGGCAATGCCCTGCTGCTACTTCTAAAGGCGGTACAATG 610
||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||
Sbjct 540 ATCAAGCTCACAAACGATGGATGGCAATGTCCTGCAGCTACTTCTAAAGGTGATACAATG 599
Query 611 CAAGTTTGCTGCAAGAGGAACCCAAAGTTTAAAGCTAAAGAAAAGGTGAAAACCAAGTTC 670
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 CAAGTTTGCTGCAAGAGGAACCCAAAGTTTAAAGCTAAAGAAAAGTTGAAAACCAAGTTC 659
Query 671 ATGCCTAGACAACACGGTGACCTGAACATAATCTACGACGTTCTTCAAGCCTATGCAAGC 730
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 660 ATGCCTAGACAACACGGTGACCTGAATATAATCTACGACGTTCTTCAAGCCTATGCTAGC 719
Query 731 AGCTACATGGCGCAGGTGACTATAGATAACACTAGCCCGCTGGGACGGTTAGACCATTGG 790
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 720 AGCTACATGGCGCAGGTGACTATCGATAACACTAGCCCGCTGGGACGGTTGGACCATTGG 779
Query 791 AACTTGACATGGGAGTGGATGCGAGGAGAGTTCATCCACTCGATGCGTGGAGCCTACGCG 850
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 AACTTGACATGGGAGTGGATGCGAGGAGAGTTCATCTACTCGATGCGTGGAGCCTACGCG 839
Query 851 GCCGAGAAGAACACGTTGGAATGCTTAAGCAGCAAGGCGGGACAGTTCTACGGGGATCTT 910
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCCGAGAAAAACACGTTGGAATGCTTAAGCAGCAAGGCGGGACAGTTCTACGGGGATCTT 899
Query 911 GATTTCTCTCAGGTTGCTAATTGCCAGAAGAAACCAATAATCAAAGATTTACCAGCTGAG 970
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 900 GATTTCTCCCAGGTTGCTAATTGCCAGAAGAAACCAATTATCAAAGATTTACCGGCTGAG 959
Query 971 CGTAAAGACGATAATGTCACCGGTAAATTGCCTTTCTGCTGCAAGAATGGCACTCTTTTG 1030
| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 960 AGAAAAGACGATAATGTCACCGGGAAATTGCCTTTCTGCTGCAAGAATGGTACTCTTTTG 1019
Query 1031 CCCACTCACATGGATCCTTCTAAATCCAAAGCCATTTTCCAGTTACAGGTTTACAAGGTA 1090
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1020 CCCACTCACATGGATCCTTCTAAATCCAAAGCCATTTTCCAGTTACAGGTGTATAAGGTG 1079
Query 1091 CCACCTGATCAGAACAGAACAGCATTCTTTCCTCCTCGAAACTGGAAGATTGATGGTATA 1150
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1080 CCACCTGATCAGAACAGAACAGCATTCTTTCCTCCTCGAAACTGGAAAATTGACGGTATA 1139
Query 1151 GTGAATCCG-ACGTACAAATGCGGACCACCTATTCGGGTGGACGCGACCCCGTTCCCTGA 1209
||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1140 GTGAATCCGCA-GTACAAATGCGGACCACCTATACGGGTAGACGCGACCCCGTTCCCTGA 1198
Query 1210 CCCTAGCGGTCTCCAAGCCACAACCTACGCTATCGCCAGCTGGCAAGTCATCTGCAATAT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1199 CCCTAGCGGTCTCCAAGCCACAACCTACGCTATCGCCAGCTGGCAAGTCATCTGCAACAT 1258
Query 1270 AACCAAGCCTAAACCACAAGCTGCACGTTGCTGCGTCTCCTTCTCAGCCTTTTACAACGA 1329
|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1259 AACCAAGCCTAAACCAAAAGCTGCACGTTGCTGCGTCTCTTTCTCAGCCTTCTACAACGA 1318
Query 1330 CTCGGCCATTCCTTGTAACACCTGCGCTTGCGGCTGCAAAGATATCGATACCGACACTTG 1389
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1319 CTCAGCCATTCCTTGTAACACCTGCGCTTGCGGCTGCAAAGATATAGATACCGACACTTG 1378
Query 1390 CAACGCCAATGCCCGACAGCTTCTCCTCCCTACTGACACACTCTTGGTACCGTTTGATAA 1449
||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1379 CAACGCCAATGCCCGACCGCTTCTCCTCCCTCCAGACACGCTCTTGGTACCGTTTGATAA 1438
Query 1450 CCGAACGCTCAAGGCAAAGGTATGGGCAAAGCAGAAGCACATGGCT-TATCCAAAGAAAC 1508
||| || ||||||||||| ||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1439 CCGGACACTCAAGGCAAAAGTATGGGCAAAGCAGAAGCACATGGCTGT-TCCAAAGAAGC 1497
Query 1509 TTCCTTGTCCTGACAACTGCGGAATCAGCTTAAACTGGCATCTTAACTCGGATTACGGTA 1568
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TTCCTTGTCCTGACAACTGTGGAATCAGCTTAAACTGGCATCTTAACTCGGATTACGGTA 1557
Query 1569 ATGGGTGGTCCGCAAGAGTAACTTTGTTTAACTGGGGAAATAATGCAGTGGAGGATTGGT 1628
|||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1558 ATGGATGGTCCGCGCGAGTAACGTTGTTTAACTGGGGGAATAATGCAGTGGAGGATTGGT 1617
Query 1629 TTGGGGCTTTGGATTTAGGCAAAGCTGGTTTAGGATATGAGAATATTTACTCCTTTAATG 1688
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1618 TTGGGGCATTGGATTTAGGCAAAGCTGGTTTAGGGTATGAGAATATTTACTCCTTCAATG 1677
Query 1689 GATCAAGAGTTCCACCTAAGAACCAGACCATTTTCTTCCAAGGACTTCCTGGTATGAACT 1748
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1678 GATCAAGAGTTCCACCAAAGAACCAGACCATTTTCTTCCAAGGACTTCCCGGTATGAACT 1737
Query 1749 ACTTGATTGGTATCACAAACGGAACGAATCCTGCGAGAGACCCGCAGATTCCCGGGAAAA 1808
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1738 ACTTGATTGGTATCACAAACGGAACGAATCCTGCAAGAGACCCGCAGATTCCCGGGAAAA 1797
Query 1809 TGCAGTCGGTTATCTCGTTTAAGAAGAAGAATTTGGGGAGTTTGAATATCATAGGAGGAG 1868
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1798 TGCAGTCGGTTATCTCGTTTAAAAAGAAGAATTTGGGGAGTTTGAATATCATAGGAGGAG 1857
Query 1869 ATGGATTTCCTAAGAGAGTTTTCTTCAATGGAGAAGAATGTGAGCTTCCTAAGTATTTCC 1928
||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1858 ATGGATTTCCTAAAAGAGTTTTCTTCAATGGGGAAGAATGTGAGCTTCCCAATTATTTCC 1917
Query 1929 CTAAAAAGAGTTCCGGGATGAGATTATCCGGTATCCGATTCTTGCCTTCGATTCTTCTCG 1988
|||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||
Sbjct 1918 CTAAAAAGAGTTCCGGGAAGAGATTATCCAGTACCCGATTCTTGCCCTCGATTCTTCTCG 1977
Query 1989 CGATCACAACATTTCATGCGATCACTGATCGCTTACTAACTGGTGTGTAGATGCTTTAGT 2048
||||||||||| ||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1978 CGATCACAACAGTTCTTGCGATCACTGATCGCTTTTTAACCGGTGTGTAGATGCTTTAGT 2037
Query 2049 TAATTATGTA 2058
||||||||||
Sbjct 2038 TAATTATGTA 2047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80827499890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5