BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27120.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492083 jgi|Araly1|492083|fgenesh2_kg.7__1516__AT4G27120.2 1661 0.0
Ahg951898 jgi|Araly1|951898|scaffold_24000001.1 159 3e-38
Ahg951504 jgi|Araly1|951504|scaffold_803391.1 159 3e-38
> Ahg492083 jgi|Araly1|492083|fgenesh2_kg.7__1516__AT4G27120.2
Length=1171
Score = 1661 bits (899), Expect = 0.0
Identities = 1041/1105 (94%), Gaps = 28/1105 (3%)
Strand=Plus/Plus
Query 104 AGGTAAACGATGGAGGAGATATTT-GCTCTGATAGTCTCAATGATTCTCATAGTTGCGGT 162
||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 83 AGGTAAAAGATGGAGGAGAT-TTTCGCTCTGATAGTCTCAATGATTCTCATAGTTGCGGT 141
Query 163 GATTCCTTTGTTCTTTTGGAAACGTCGGAGAGATGCTAGATCACGGGAGGAAGTTGCTGA 222
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 142 GATTCCTTTGTTCTTTTGGAAACGTCGGAGAGATGCTAGATCACGGGAGCAAGTTGCAGA 201
Query 223 ACCACCACAGGTTCAACCTCGTGAAAACGTGGCACGTGCTGGTGGTGGACGGAGGATGCG 282
||| |||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||
Sbjct 202 ACCGCCACAGGTTCAAGCTCGTGAAAATGTGGCACGTGCTACTGGTGGACGTAGGATGCG 261
Query 283 TAGGAGA-C--CTGCAGCTTCTGGTGCTAG---CTCCTCTACATCCAATGTTCAAGAAAA 336
| ||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 262 TCGGAGACCTGCTGCAGCTTCTGGTGCTAGCTCCTCCTCTACATCCAATGTTCAAGTCAG 321
Query 337 CGGCAGTGGGAG-TGAAGATGAAGATGAAGATGAAGCTGGTGGAACTcaagccagagcat 395
|| || | || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 322 TGGGGGT-GAAGATGAAGATGAAGATGAAGATGAAGCTGGTGGGTCTCAAGCCAGAGCAT 380
Query 396 caaagaagaaagagaagaagcgacaagagcgggaagcacaaagacaagcTGAGGAAGCTA 455
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 381 CAAAGAAGAAAGAGAAGAAGCGACAAGAGCGGGAAGCACAAAGACAGGCTGAGGAAGCTA 440
Query 456 CACGCGAGTCAAGGAATACAAAACAAGATTGGTATGCagaaatgcggaggaagaaggatg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CACGCGAGTCAAGGAATACAAAACAAGATTGGTATGCAGAAATGCGGAGGAAGAAGGATG 500
Query 516 aagaacgcgaggcagaagagctgaagttggaagaagaagaaaaagcgcgacaagccaaag 575
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 501 AAGAGCGCGAGGCAGAGGAGCTGAAGCTGGAAGAAGAAGAAAAAGCGCGACAAGCCAAGG 560
Query 576 aagaagaGGCAGCTGCGTTAGAGTTTGACAAATGGAAAGGGGAATTTTCAGTTGATGCTG 635
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AAGAGGAGGCAGCTGCGCTAGAGTTTGACAAATGGAAAGGGGAATTTTCAGTTGATGCTG 620
Query 636 AAGGTACTACAGAGGAAGTGCAAGGTGGGAATCAAGATTTGCTTTCAGAATTTGTTGAAT 695
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 621 AAGGTACTACAGAGGAAGTGCAAGGTGGAAATCAAGATTTGCTCTCAGAATTTGTTGAAT 680
Query 696 ACATAAAGAAACAGAAATGTGTTCCACTTGAAGATCTCGCTGCAGAATTTCATCTACGTA 755
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 681 ACATAAAGAAACAGAAATGTGTTCCACTTGAAGATCTCGCCGCAGAATTTCATCTACGAA 740
Query 756 CTCAGGAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGGGCGGCTCTCGGGGGTCA 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTCAGGAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGGGCGGCTCTCGGGGGTCA 800
Query 816 TGGATGATAGAGGGAAATACATTTACATATCAATGGAAGAGATGAATGCGGTTGCAGATT 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TGGATGATAGAGGGAAATACATTTACATATCAATGGAAGAGATGAATGCGGTTGCAGATT 860
Query 876 ACATCAAACGTCAAGGAAGAGTTAGTATCTCACATCTAGCAAGCAAGTCAAACCAGTTCA 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 ACATCAAACGTCAAGGAAGAGTTAGTATCTCACATCTAGCAAGCAAGTCAAACCAGTTCA 920
Query 936 TCGACTTGGAGCCCAAAGTACAGCATCAGCTGACTGAAGAAATTAGCGGCATGGAAGAGA 995
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 921 TCGACTTGGAGCCCAAAGTACAGCATCAGCTGACCGAAGAAATTAGCGGCATGGAAGAGA 980
Query 996 TCTCAGTTTCTTAGTTGTGTTTCTCGGGTAAAATCGTTTGTCAAAAACAAGAGTTAAAAG 1055
|||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 981 TCTCAGTTTCATAGTTGTGTTCCTCGAGTAAAATCGTTTGTCAAAAACAAGAGTTAAA-G 1039
Query 1056 CCTTAGGT-GCTCACTGCAACATGATGGTGTTTGGGTCATATACCTTCTTGTTCTTATTT 1114
||||||| | ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1040 CCTTAGGGAG-TCACTGCAACATGATGGTGTTTGGGTCATATACCTTCTT-T----A--- 1090
Query 1115 TACTAGTTTGAGATCCTTAGGCTTGCATCCATATACAGTACATGAAA-TACCATATGTTT 1173
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1091 -----GTTTGAGATCCTTAGGCTTGCATCCATATACAGTACATGAAAATACCATATGTT- 1144
Query 1174 AAAATTGTTGTTTGTCTTACCATTA 1198
||| |||||||||||||||||||||
Sbjct 1145 AAATTTGTTGTTTGTCTTACCATTA 1169
> Ahg951898 jgi|Araly1|951898|scaffold_24000001.1
Length=265
Score = 159 bits (86), Expect = 3e-38
Identities = 102/110 (93%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 331 AGAAAACGGCAGTGGGAGTGAAGATGAAGATGAAGATGAAGCTGGTGGAACTcaagccag 390
||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| || |
Sbjct 140 AGAAAACATCAGTGGAAGTGAAGATGAAGATGAAGATGAAGCTGGTGGATCCCAATCCTG 81
Query 391 agcatcaaagaagaaagagaagaagcgacaagagcgggaagcacaaagac 440
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 80 AGCATCAAAGAAGAAAGAGAATAAGCGACAAGAGCGGGAAGCACAAAGAC 31
> Ahg951504 jgi|Araly1|951504|scaffold_803391.1
Length=200
Score = 159 bits (86), Expect = 3e-38
Identities = 102/110 (93%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 331 AGAAAACGGCAGTGGGAGTGAAGATGAAGATGAAGATGAAGCTGGTGGAACTcaagccag 390
||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| || |
Sbjct 140 AGAAAACATCAGTGGAAGTGAAGATGAAGATGAAGATGAAGCTGGTGGATCCCAATCCTG 81
Query 391 agcatcaaagaagaaagagaagaagcgacaagagcgggaagcacaaagac 440
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 80 AGCATCAAAGAAGAAAGAGAATAAGCGACAAGAGCGGGAAGCACAAAGAC 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5