BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27130.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492082 jgi|Araly1|492082|fgenesh2_kg.7__1515__AT4G27130.1 985 0.0
Ahg474560 jgi|Araly1|474560|fgenesh2_kg.1__4514__AT1G54290.1 407 7e-113
> Ahg492082 jgi|Araly1|492082|fgenesh2_kg.7__1515__AT4G27130.1
Length=749
Score = 985 bits (533), Expect = 0.0
Identities = 617/657 (94%), Gaps = 7/657 (1%)
Strand=Plus/Plus
Query 114 AACAGAAGTTGCAGACTTTATCCGAATTTAGGG-TT--TCAGCTCGTTCTCTCTTCTCCA 170
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 57 AACAGAAGTTGCAGACTTTATCCGAATTTAGGGTTTCATCAGCTCGTTCTCTCTTCTCCG 116
Query 171 ATTATCAGATCCACGAAACTCTACTTTTCGGATCAGGTCTCAGCTTCTCTATCGTTTGCC 230
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 117 ATTATCAGATCCACGAAACTCTAATTTTCGGATCAGGTCTCAGCTTCTCTATCGTTTGCC 176
Query 231 CCTCAGATCAACAAAGTTTCATGTCTGAACTTGATTCCCAGGTCCCTACTGCCTTCGACC 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 177 CCTCAGATCAACAAAGTTTCATGTCTGAACTTGATTCCCAGGTCCCTACTGCCTTTGACC 236
Query 291 CGTTTGCTGATGCGAATGCTGAGGACTCAGGTGCAGGAACAAAGGAGTACGTTCATATTC 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 CGTTTGCTGATGCGAATGCTGAGGACTCAGGTGCAGGAACAAAGGAGTACGTTCACATTC 296
Query 351 GTGTCCAGCAGCGGAATGGTAGGAAAAGCTTGACAACGGTCCAGGGGCTGAAGAAAGAGT 410
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 297 GTGTCCAGCAGCGGAATGGTAGGAAAAGCTTGACAACGGTCCAGGGGCTAAAGAAAGAGT 356
Query 411 ACAGCTACACCAAGATACTTAAGGACCTCAAGAAAGAATTTTGCTGCAACGGAACTGTGG 470
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACAGCTACAGCAAGATACTTAAGGACCTCAAGAAAGAATTTTGCTGCAACGGAACTGTGG 416
Query 471 TTCAAGACTCAGAACTCGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCT 530
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTCAGGACTCAGAGCTCGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCT 476
Query 531 CCACGTTCCTAGTCCAGGCTGGGCTTGTGAAGAAAGATAACATCAAGATCCATGGTTTCT 590
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 477 CCACTTTCCTAGTCCAGGCTGGCCTTGTGAAGAAAGATAACATCAAGATCCATGGTTTCT 536
Query 591 GAGCAGCTTCTGTTGCATT-TCCCGTAGGCCGTTTAAGTGGATCATTACTCTATCGTGCA 649
|||| |||||||||||||| |||| |||| |||||||||||||| ||||| | | |||||
Sbjct 537 GAGCTGCTTCTGTTGCATTGTCCC-TAGGACGTTTAAGTGGATCGTTACTGTGTTGTGCA 595
Query 650 GTTACAAAACATATCTTCACCTTTCCCTTCGATTACTTGTTACTTG-TTTCTGTTTTAGC 708
||| ||||||| ||||||||||||| ||| |||| |||||| | | ||| |||| || |
Sbjct 596 GTTCCAAAACAAATCTTCACCTTTCTCTTTGATTGCTTGTTGGT-GATTTTTGTTATATC 654
Query 709 GTTGGAATGATACTAAGAGACCATCATCGTTTTCTTTCACATGTTACTTCTGTAATA 765
|||| ||||||||||||||| |||||||| ||||| |||||| ||||| |||||||
Sbjct 655 TTTGGTATGATACTAAGAGACTATCATCGTCTTCTTCCACATGCTACTTGTGTAATA 711
> Ahg474560 jgi|Araly1|474560|fgenesh2_kg.1__4514__AT1G54290.1
Length=749
Score = 407 bits (220), Expect = 7e-113
Identities = 310/354 (88%), Gaps = 4/354 (1%)
Strand=Plus/Plus
Query 244 AAGTTTCATGTCTGAACTTG-A-TTCCCAGGTCCCTACTGCCTTCGACCCGTTTGCTGAT 301
||| ||||||||||| |||| | || || ||||| |||||||| || ||||||||||||
Sbjct 211 AAGGTTCATGTCTGATCTTGAAGTT--CAAGTCCCCACTGCCTTTGATCCGTTTGCTGAT 268
Query 302 GCGAATGCTGAGGACTCAGGTGCAGGAACAAAGGAGTACGTTCATATTCGTGTCCAGCAG 361
|| |||||||||||||| || || ||||||||||| ||||| || |||||||| ||||||
Sbjct 269 GCAAATGCTGAGGACTCTGGGGCGGGAACAAAGGAATACGTGCACATTCGTGTTCAGCAG 328
Query 362 CGGAATGGTAGGAAAAGCTTGACAACGGTCCAGGGGCTGAAGAAAGAGTACAGCTACACC 421
|| |||||||| |||||||||||||| || ||||| || ||||||||||| ||||| | |
Sbjct 329 CGTAATGGTAGAAAAAGCTTGACAACTGTTCAGGGACTTAAGAAAGAGTATAGCTATAGC 388
Query 422 AAGATACTTAAGGACCTCAAGAAAGAATTTTGCTGCAACGGAACTGTGGTTCAAGACTCA 481
||||||||||| ||||| ||||||||||| |||||||| || ||||| || || |||||
Sbjct 389 AAGATACTTAAAGACCTTAAGAAAGAATTCTGCTGCAATGGCACTGTTGTCCAGGACTCT 448
Query 482 GAACTCGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCTCCACGTTCCTA 541
||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 449 GAATTAGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCTCTACGTTCCTT 508
Query 542 GTCCAGGCTGGGCTTGTGAAGAAAGATAACATCAAGATCCATGGTTTCTGAGCA 595
|| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 509 GTTCAGGCTGGGCTTGTGAAGAAGGATAACATCAAAATCCATGGTTTTTGAGCA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5