BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27140.1
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492081 jgi|Araly1|492081|fgenesh2_kg.7__1514__AT4G27140.1 795 0.0
Ahg945343 jgi|Araly1|945343|scaffold_701572.1 483 1e-135
Ahg492079 jgi|Araly1|492079|fgenesh2_kg.7__1512__AT4G27160.1 449 1e-125
Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421 442 2e-123
> Ahg492081 jgi|Araly1|492081|fgenesh2_kg.7__1514__AT4G27140.1
Length=650
Score = 795 bits (430), Expect = 0.0
Identities = 602/678 (89%), Gaps = 39/678 (6%)
Strand=Plus/Plus
Query 30 AAAAAATGGCAAACAAGTTGTTCCTCGTCTGCGCAGCTCTCGCTCTCTGCTTCCTCCTCA 89
|||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAAAATGGCAAACAAACTCTTCCTCGTCTGCGCAGCTCTCGCCCTCTGCTTCCTCCTCA 60
Query 90 CCAACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAGATGACGCCACTAACCCCA 149
||||||||||||||||||||||| |||| |||||||| || ||||||||||| |||||||
Sbjct 61 CCAACGCTTCCATCTACCGCACCATCGTCGAGTTCGACGAGGATGACGCCACCAACCCCA 120
Query 150 TAGGCCCAAAAATGAGGAAATGCC-GCAAGGAGTTTCAGAAAGAACAACACCTAAGAGCT 208
||||||||||| | |||||||||| | ||||| |||||| ||||||||||||||||||||
Sbjct 121 TAGGCCCAAAAGTAAGGAAATGCCAG-AAGGAATTTCAGGAAGAACAACACCTAAGAGCT 179
Query 209 TGCCAGCAATTGATGCTCCAGCAAGCAAGGCAAGGCCGTAGCGATGAGTTTGATTTCGAA 268
|||||||||||||||| || |||||||||||||||||||| ||||||| | |||||||||
Sbjct 180 TGCCAGCAATTGATGCGCCGGCAAGCAAGGCAAGGCCGTAACGATGAGCTCGATTTCGAA 239
Query 269 GACGACATGGAGAACCCACAGGGACAACAGCAGGAACA-ACAGCTATTCCAGCAGTGCTG 327
||||||||||||||||||||||| | ||||||||| | | |||||||||||||||||||
Sbjct 240 GACGACATGGAGAACCCACAGGGCCCCCAGCAGGAAGAGA-AGCTATTCCAGCAGTGCTG 298
Query 328 CAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCACCTTGAAACAAGCTGCCAA 387
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 CAACGAGCTTCGCCAGGAAGAGCCATATTGTGTTTGCCCCACCTTGAAACAAGCTGCCAA 358
Query 388 GGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTCAGGAAAATTTACCAGACAGC 447
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 GGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTCAGGAAAATTTTCCAGACAGC 418
Query 448 CAAGCACTTGCCCAACGTTTGCGACATCCCGCAAGTTGATGTTTGTCCCTTCAACATCCC 507
||| ||||||| || |||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 419 TAAGAACTTGCCTAAAGTTTGCAACATCCCGCAAGTTGATGTTTGCCCCTTCAAGATCCC 478
Query 508 TTCATTCCCTTCTTTCTACTAAATCTC-AAACAAACC-CTCAAAGCGTATGAGAGTGTGG 565
|||||||||||||| ||||||||| || ||||||| | ||||||||||||||||||||||
Sbjct 479 TTCATTCCCTTCTTACTACTAAAT-TCCAAACAAAACTCTCAAAGCGTATGAGAGTGTGG 537
Query 566 TTGTTGATATATACATGTTGACACTTGACACATACCACACCTCATCGTGTGTTTTATGAT 625
||||||||| | ||| || | | | | || | ||||||||||||
Sbjct 538 TTGTTGATA----C-------CAC---AC-C-T-C-A----TC-T--TGTGTTTTATGA- 571
Query 626 AAATGTAAGCTTTTGGATGTTTGAGGGTAATGTAA---GCACTACT--T-AATAAATAAG 679
||||||||||||| | |||||||||| |||||||| |||||||| | ||||||||||
Sbjct 572 AAATGTAAGCTTTAGTATGTTTGAGGCTAATGTAATTAGCACTACTCCTTAATAAATAAG 631
Query 680 AGTTTTGTTTATAttttt 697
|||||||||||| |||||
Sbjct 632 AGTTTTGTTTATGTTTTT 649
> Ahg945343 jgi|Araly1|945343|scaffold_701572.1
Length=547
Score = 483 bits (261), Expect = 1e-135
Identities = 445/529 (84%), Gaps = 31/529 (6%)
Strand=Plus/Plus
Query 33 AAATGGCAAACAAG-TTGTTCCTCGTCTGCGCAGCTCTCGCTCTCTGCTTCCTCCTCACC 91
||||||| |||||| || ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 22 AAATGGCGAACAAGCTT-TTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCACC 80
Query 92 AACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAGATGACGCCACTAACCCCATA 151
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 81 AACGCTTCCATCTACCGCACCGTCGTCGAGTTCGACGAAGATGACGCCACCAACCCCATG 140
Query 152 GGCCCAAAAATGAGGAAATGCC-GCAAGGAGTTTCAGAAAGAACAACACCTAAGAGCTTG 210
||||| || | | || ||||| | |||||||| ||| || ||| ||||||||||||||
Sbjct 141 GGCCC-AAGA-CA-GAGATGCCAG-AAGGAGTTCCAGCAATCACAGCACCTAAGAGCTTG 196
Query 211 CCAGCA-ATTGATGCTCCAGCAAGCAAGGCAAGG-C--CGT--AG-CGATGAGTTTGATT 263
|||| | ||| |||| ||||| |||||||||| | || | |||||||| ||||
Sbjct 197 CCAG-AGATTCATGCAGAAGCAAACAAGGCAAGGTCGTGGTGGTGAAGATGAGTTCGATT 255
Query 264 TCGAAGACGACATGGAGAACCCACAGGGACAACAGCAGGAACAACAGCTATTCCAGCAGT 323
|||||||||| ||||||||||||||||| | ||||||| ||| |||||| |||||||||
Sbjct 256 TCGAAGACGATATGGAGAACCCACAGGGCCCCCAGCAGGGACACCAGCTACTCCAGCAGT 315
Query 324 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCACCTTGAAACAAGCTG 383
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |
Sbjct 316 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAAACAGGCGG 375
Query 384 CCA-AGGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTC-AGGAAAATTTACCA 441
| | || ||||||||||||||||||||||| |||| | ||| || ||||||||||||||
Sbjct 376 CTAGAG-CCGTTAGACTCCAGGGACAGCACGGACCATTCCAA-TCCAGGAAAATTTACCA 433
Query 442 GACAGCCAAGCACTTGCCCAACGTTTGC-GACATCCCGCAAGTTGATGTTTGTCCCTTC- 499
|||||| ||| ||||||| || |||||| | |||| |||||||| || || ||||||
Sbjct 434 GACAGCTAAGTACTTGCCTAAGGTTTGCAGG-ATCCAGCAAGTTGGTGAATGCCCCTTCC 492
Query 500 A-AC-A---TCCC-TTCATTCCCTTCTTTCTACTAAATCTC-AAACAAA 541
| || | |||| ||| |||||| ||| |||||| || || |||||||
Sbjct 493 AGACCACCATCCCCTTC-TTCCCTCCTTACTACTAGAT-TCCAAACAAA 539
> Ahg492079 jgi|Araly1|492079|fgenesh2_kg.7__1512__AT4G27160.1
Length=667
Score = 449 bits (243), Expect = 1e-125
Identities = 539/669 (81%), Gaps = 72/669 (11%)
Strand=Plus/Plus
Query 12 AAAACATACACACATAGCAAAAAATGGCAAACAAGTTGTTCCTCGTCTGCGCAGCTCTCG 71
|||||||||||| |||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 18 AAAACATACACAAATAGCAAAAAATGGCAAACAAGCTCTTCCTCGTCTGCGCAACTCTCG 77
Query 72 CTCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAG 131
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 78 CCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACAGTCGTCGAGTTCGAGGAAG 137
Query 132 ATGACGCCACTAACCCCATAGGCCCAAAA-ATGAGGAAATGCC-GCAAGGAGTTTCAGAA 189
|||||||||| |||||||| ||||||| | | ||| | |||| | |||||||| ||| |
Sbjct 138 ATGACGCCACCAACCCCATGGGCCCAAGACA-GAG-A--TGCCAG-AAGGAGTTCCAGCA 192
Query 190 AGAACAACACCTAAGAGCTTGCCAGCA-ATTGATGCTCCAGCAAGCAAGGCAAGGCCGTA 248
| ||| |||||||||||||||||| | || ||||| ||||| |||||||||| |||
Sbjct 193 ATCACAGCACCTAAGAGCTTGCCAG-AGATGGATGCAGAAGCAAACAAGGCAAGGTCGTG 251
Query 249 GCGATGAGTTTGATTTCGAAGACGACATGGAGAACCCACAGGGACAACAGCAGGAACAAC 308
|||||||||| |||||||| | | | ||| ||| || | ||| || |
Sbjct 252 GCGATGAGTTCGATTTCGAGG--G-C--------CCC-CAG---CA---G--GGA-CACC 290
Query 309 AGCTATTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCA 368
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 291 AGCTACTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCA 350
Query 369 CCTTGAAACAAGCTGCCA-AGGCCGTTAGACTCCAGGGACAGCACCAACCAAT-GCAAGT 426
|||||||||| || || | || | ||||||||||||||||||||| |||| | | || |
Sbjct 351 CCTTGAAACAGGCGGCTAGAG-CTGTTAGACTCCAGGGACAGCACGGACCATTCG-AA-T 407
Query 427 C-AGGAAAATTTACCAGACAGCCAAGCACTTGCCCAACGTTTGCGACATCCCGCAAGTTG 485
| |||||||||||||||||||| ||| ||||||| ||||||||| | |||| ||||||||
Sbjct 408 CCAGGAAAATTTACCAGACAGCTAAGTACTTGCCTAACGTTTGCAAAATCCAGCAAGTTG 467
Query 486 ATGTTTGTCCCTTC-A-A-CA---TCCCTT-CATTCCCTTCTTTCTACTAAATCTCAAAC 538
|| ||||||||| | | || |||||| | |||||| ||| |||||| || || |
Sbjct 468 GTGAATGTCCCTTCCAGAGCACCATCCCTTTC-TTCCCTCCTTACTACTAGAT-TC---C 522
Query 539 AAACCCTCAA-AGCG-T-ATGA-GAGTGTGGTTGTTGATATATACATGTTGACACTTGAC 594
|| |||| | | || | || | |||||||| | ||||| ||| ||| | | | ||
Sbjct 523 AAGCCCT-AGCA-CGATGATCATGAGTGTGGCTATTGATGTAT----GTT-A-A-T--AC 571
Query 595 ACATACCACACCTCATCGTGTGT-TTTATGATAAA--TGTAAGCTTTTGGATGTTTGAGG 651
|||| ||| ||||||||||| ||| | ||||| ||||||||| ||||||||||||
Sbjct 572 T-ATAC-ACAG-TCATCGTGTGTGTTT-T-ATAAAACTGTAAGCTTA-GGATGTTTGAGG 625
Query 652 GTAATGTAA 660
||||||||
Sbjct 626 CTAATGTAA 634
> Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421
Length=792
Score = 442 bits (239), Expect = 2e-123
Identities = 426/509 (84%), Gaps = 42/509 (8%)
Strand=Plus/Plus
Query 26 TAGCAAAAAATGGCAAACAAGTTGTTCCTCGTCTGCGCAGCTCTCGCTCTCTGCTTCCTC 85
|||||||||||||| |||||| | ||| ||||||||||| ||||||||||||||||||||
Sbjct 321 TAGCAAAAAATGGCGAACAAGCTCTTCATCGTCTGCGCATCTCTCGCTCTCTGCTTCCTC 380
Query 86 CTCACCAACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAGATGACGCCA-CTAA 144
||||||||||||||||||||||||| | | | | | ||| | | ||||||||| | ||
Sbjct 381 CTCACCAACGCTTCCATCTACCGCA-C-T-G-T-CG-TCG-A-ACTATGACGCCAGC-AA 431
Query 145 CCCCATAGGCCCAAAAATGAGGAAATG-CCGCAAGGAGTTTCAGAAAGAACAACACCTAA 203
|||||||||||| || | | |||||| | | | |||||||||||||||||||||||| |
Sbjct 432 CCCCATAGGCCC-AAGA-CA-GAAATGTCAG-AGGGAGTTTCAGAAAGAACAACACCTTA 487
Query 204 GAGCTTGCCAGCAATTGATGCTCCAGCAAGCAAGGCAAGGCCGTAGCGATGAGTTTGATT 263
|||||||||||| |||||||| | ||||| || ||||||| | | | || | ||
Sbjct 488 GAGCTTGCCAGCGATTGATGCGCAAGCAAATGAGACAAGGCCAT-G-G-TG-G--TG--- 538
Query 264 TCGAAGACGACATGGAGAACCCACAGGGACAACAGCAGGAACAACAGCTATTCCAGCAGT 323
||||||||||| ||||| || | | ||| | || | | |||| ||||| |||
Sbjct 539 --GAAGACGACATCGAGAA-CC-C---G----CAG-A-GACCCTC-GCTACTCCAGAAGT 584
Query 324 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCACCTTGAAACAAGCTG 383
|||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 585 GCTGCAGCGAGCTTCGCCA-GAAGACCCAGATTGCGTTTGCCCCACCTTGAAACAAGCTG 643
Query 384 CCAAGGCCGTTAGACTCCAGGGACAGCA-C-C-AACCAATGCAAGTCAGGAAAATTTACC 440
|||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||
Sbjct 644 CCAAGGCCGTTAGACTCCAGGGACAGCAGCACCAACCAATGAAAGTCAGGAAAATTTACC 703
Query 441 AGACAGCCAAGCACTTGCCCAACGTTTGCGACATCCCGCAAGTTGATGTTTGTCCCTTCA 500
||||||| ||| ||||||| ||| ||||| | |||||||||||||||||||| ||||||
Sbjct 704 AGACAGCTAAGAACTTGCCTAACATTTGCAAAATCCCGCAAGTTGATGTTTGCCCCTTCC 763
Query 501 ACATCCCTTCATTCCCTTCTTTCTACTAA 529
| ||||||||||||||||||| |||||||
Sbjct 764 AGATCCCTTCATTCCCTTCTTACTACTAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25847337726
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5