BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27140.1 Length=703 Score E Sequences producing significant alignments: (Bits) Value Ahg492081 jgi|Araly1|492081|fgenesh2_kg.7__1514__AT4G27140.1 795 0.0 Ahg945343 jgi|Araly1|945343|scaffold_701572.1 483 1e-135 Ahg492079 jgi|Araly1|492079|fgenesh2_kg.7__1512__AT4G27160.1 449 1e-125 Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421 442 2e-123 > Ahg492081 jgi|Araly1|492081|fgenesh2_kg.7__1514__AT4G27140.1 Length=650 Score = 795 bits (430), Expect = 0.0 Identities = 602/678 (89%), Gaps = 39/678 (6%) Strand=Plus/Plus Query 30 AAAAAATGGCAAACAAGTTGTTCCTCGTCTGCGCAGCTCTCGCTCTCTGCTTCCTCCTCA 89 |||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| Sbjct 1 AAAAAATGGCAAACAAACTCTTCCTCGTCTGCGCAGCTCTCGCCCTCTGCTTCCTCCTCA 60 Query 90 CCAACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAGATGACGCCACTAACCCCA 149 ||||||||||||||||||||||| |||| |||||||| || ||||||||||| ||||||| Sbjct 61 CCAACGCTTCCATCTACCGCACCATCGTCGAGTTCGACGAGGATGACGCCACCAACCCCA 120 Query 150 TAGGCCCAAAAATGAGGAAATGCC-GCAAGGAGTTTCAGAAAGAACAACACCTAAGAGCT 208 ||||||||||| | |||||||||| | ||||| |||||| |||||||||||||||||||| Sbjct 121 TAGGCCCAAAAGTAAGGAAATGCCAG-AAGGAATTTCAGGAAGAACAACACCTAAGAGCT 179 Query 209 TGCCAGCAATTGATGCTCCAGCAAGCAAGGCAAGGCCGTAGCGATGAGTTTGATTTCGAA 268 |||||||||||||||| || |||||||||||||||||||| ||||||| | ||||||||| Sbjct 180 TGCCAGCAATTGATGCGCCGGCAAGCAAGGCAAGGCCGTAACGATGAGCTCGATTTCGAA 239 Query 269 GACGACATGGAGAACCCACAGGGACAACAGCAGGAACA-ACAGCTATTCCAGCAGTGCTG 327 ||||||||||||||||||||||| | ||||||||| | | ||||||||||||||||||| Sbjct 240 GACGACATGGAGAACCCACAGGGCCCCCAGCAGGAAGAGA-AGCTATTCCAGCAGTGCTG 298 Query 328 CAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCACCTTGAAACAAGCTGCCAA 387 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 299 CAACGAGCTTCGCCAGGAAGAGCCATATTGTGTTTGCCCCACCTTGAAACAAGCTGCCAA 358 Query 388 GGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTCAGGAAAATTTACCAGACAGC 447 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 359 GGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTCAGGAAAATTTTCCAGACAGC 418 Query 448 CAAGCACTTGCCCAACGTTTGCGACATCCCGCAAGTTGATGTTTGTCCCTTCAACATCCC 507 ||| ||||||| || |||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 419 TAAGAACTTGCCTAAAGTTTGCAACATCCCGCAAGTTGATGTTTGCCCCTTCAAGATCCC 478 Query 508 TTCATTCCCTTCTTTCTACTAAATCTC-AAACAAACC-CTCAAAGCGTATGAGAGTGTGG 565 |||||||||||||| ||||||||| || ||||||| | |||||||||||||||||||||| Sbjct 479 TTCATTCCCTTCTTACTACTAAAT-TCCAAACAAAACTCTCAAAGCGTATGAGAGTGTGG 537 Query 566 TTGTTGATATATACATGTTGACACTTGACACATACCACACCTCATCGTGTGTTTTATGAT 625 ||||||||| | ||| || | | | | || | |||||||||||| Sbjct 538 TTGTTGATA----C-------CAC---AC-C-T-C-A----TC-T--TGTGTTTTATGA- 571 Query 626 AAATGTAAGCTTTTGGATGTTTGAGGGTAATGTAA---GCACTACT--T-AATAAATAAG 679 ||||||||||||| | |||||||||| |||||||| |||||||| | |||||||||| Sbjct 572 AAATGTAAGCTTTAGTATGTTTGAGGCTAATGTAATTAGCACTACTCCTTAATAAATAAG 631 Query 680 AGTTTTGTTTATAttttt 697 |||||||||||| ||||| Sbjct 632 AGTTTTGTTTATGTTTTT 649 > Ahg945343 jgi|Araly1|945343|scaffold_701572.1 Length=547 Score = 483 bits (261), Expect = 1e-135 Identities = 445/529 (84%), Gaps = 31/529 (6%) Strand=Plus/Plus Query 33 AAATGGCAAACAAG-TTGTTCCTCGTCTGCGCAGCTCTCGCTCTCTGCTTCCTCCTCACC 91 ||||||| |||||| || ||||||||||||||| ||||||| |||||||||||||||||| Sbjct 22 AAATGGCGAACAAGCTT-TTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCACC 80 Query 92 AACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAGATGACGCCACTAACCCCATA 151 |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct 81 AACGCTTCCATCTACCGCACCGTCGTCGAGTTCGACGAAGATGACGCCACCAACCCCATG 140 Query 152 GGCCCAAAAATGAGGAAATGCC-GCAAGGAGTTTCAGAAAGAACAACACCTAAGAGCTTG 210 ||||| || | | || ||||| | |||||||| ||| || ||| |||||||||||||| Sbjct 141 GGCCC-AAGA-CA-GAGATGCCAG-AAGGAGTTCCAGCAATCACAGCACCTAAGAGCTTG 196 Query 211 CCAGCA-ATTGATGCTCCAGCAAGCAAGGCAAGG-C--CGT--AG-CGATGAGTTTGATT 263 |||| | ||| |||| ||||| |||||||||| | || | |||||||| |||| Sbjct 197 CCAG-AGATTCATGCAGAAGCAAACAAGGCAAGGTCGTGGTGGTGAAGATGAGTTCGATT 255 Query 264 TCGAAGACGACATGGAGAACCCACAGGGACAACAGCAGGAACAACAGCTATTCCAGCAGT 323 |||||||||| ||||||||||||||||| | ||||||| ||| |||||| ||||||||| Sbjct 256 TCGAAGACGATATGGAGAACCCACAGGGCCCCCAGCAGGGACACCAGCTACTCCAGCAGT 315 Query 324 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCACCTTGAAACAAGCTG 383 |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || | Sbjct 316 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAAACAGGCGG 375 Query 384 CCA-AGGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTC-AGGAAAATTTACCA 441 | | || ||||||||||||||||||||||| |||| | ||| || |||||||||||||| Sbjct 376 CTAGAG-CCGTTAGACTCCAGGGACAGCACGGACCATTCCAA-TCCAGGAAAATTTACCA 433 Query 442 GACAGCCAAGCACTTGCCCAACGTTTGC-GACATCCCGCAAGTTGATGTTTGTCCCTTC- 499 |||||| ||| ||||||| || |||||| | |||| |||||||| || || |||||| Sbjct 434 GACAGCTAAGTACTTGCCTAAGGTTTGCAGG-ATCCAGCAAGTTGGTGAATGCCCCTTCC 492 Query 500 A-AC-A---TCCC-TTCATTCCCTTCTTTCTACTAAATCTC-AAACAAA 541 | || | |||| ||| |||||| ||| |||||| || || ||||||| Sbjct 493 AGACCACCATCCCCTTC-TTCCCTCCTTACTACTAGAT-TCCAAACAAA 539 > Ahg492079 jgi|Araly1|492079|fgenesh2_kg.7__1512__AT4G27160.1 Length=667 Score = 449 bits (243), Expect = 1e-125 Identities = 539/669 (81%), Gaps = 72/669 (11%) Strand=Plus/Plus Query 12 AAAACATACACACATAGCAAAAAATGGCAAACAAGTTGTTCCTCGTCTGCGCAGCTCTCG 71 |||||||||||| |||||||||||||||||||||| | ||||||||||||||| |||||| Sbjct 18 AAAACATACACAAATAGCAAAAAATGGCAAACAAGCTCTTCCTCGTCTGCGCAACTCTCG 77 Query 72 CTCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAG 131 | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 78 CCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACAGTCGTCGAGTTCGAGGAAG 137 Query 132 ATGACGCCACTAACCCCATAGGCCCAAAA-ATGAGGAAATGCC-GCAAGGAGTTTCAGAA 189 |||||||||| |||||||| ||||||| | | ||| | |||| | |||||||| ||| | Sbjct 138 ATGACGCCACCAACCCCATGGGCCCAAGACA-GAG-A--TGCCAG-AAGGAGTTCCAGCA 192 Query 190 AGAACAACACCTAAGAGCTTGCCAGCA-ATTGATGCTCCAGCAAGCAAGGCAAGGCCGTA 248 | ||| |||||||||||||||||| | || ||||| ||||| |||||||||| ||| Sbjct 193 ATCACAGCACCTAAGAGCTTGCCAG-AGATGGATGCAGAAGCAAACAAGGCAAGGTCGTG 251 Query 249 GCGATGAGTTTGATTTCGAAGACGACATGGAGAACCCACAGGGACAACAGCAGGAACAAC 308 |||||||||| |||||||| | | | ||| ||| || | ||| || | Sbjct 252 GCGATGAGTTCGATTTCGAGG--G-C--------CCC-CAG---CA---G--GGA-CACC 290 Query 309 AGCTATTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCA 368 ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 291 AGCTACTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCA 350 Query 369 CCTTGAAACAAGCTGCCA-AGGCCGTTAGACTCCAGGGACAGCACCAACCAAT-GCAAGT 426 |||||||||| || || | || | ||||||||||||||||||||| |||| | | || | Sbjct 351 CCTTGAAACAGGCGGCTAGAG-CTGTTAGACTCCAGGGACAGCACGGACCATTCG-AA-T 407 Query 427 C-AGGAAAATTTACCAGACAGCCAAGCACTTGCCCAACGTTTGCGACATCCCGCAAGTTG 485 | |||||||||||||||||||| ||| ||||||| ||||||||| | |||| |||||||| Sbjct 408 CCAGGAAAATTTACCAGACAGCTAAGTACTTGCCTAACGTTTGCAAAATCCAGCAAGTTG 467 Query 486 ATGTTTGTCCCTTC-A-A-CA---TCCCTT-CATTCCCTTCTTTCTACTAAATCTCAAAC 538 || ||||||||| | | || |||||| | |||||| ||| |||||| || || | Sbjct 468 GTGAATGTCCCTTCCAGAGCACCATCCCTTTC-TTCCCTCCTTACTACTAGAT-TC---C 522 Query 539 AAACCCTCAA-AGCG-T-ATGA-GAGTGTGGTTGTTGATATATACATGTTGACACTTGAC 594 || |||| | | || | || | |||||||| | ||||| ||| ||| | | | || Sbjct 523 AAGCCCT-AGCA-CGATGATCATGAGTGTGGCTATTGATGTAT----GTT-A-A-T--AC 571 Query 595 ACATACCACACCTCATCGTGTGT-TTTATGATAAA--TGTAAGCTTTTGGATGTTTGAGG 651 |||| ||| ||||||||||| ||| | ||||| ||||||||| |||||||||||| Sbjct 572 T-ATAC-ACAG-TCATCGTGTGTGTTT-T-ATAAAACTGTAAGCTTA-GGATGTTTGAGG 625 Query 652 GTAATGTAA 660 |||||||| Sbjct 626 CTAATGTAA 634 > Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421 Length=792 Score = 442 bits (239), Expect = 2e-123 Identities = 426/509 (84%), Gaps = 42/509 (8%) Strand=Plus/Plus Query 26 TAGCAAAAAATGGCAAACAAGTTGTTCCTCGTCTGCGCAGCTCTCGCTCTCTGCTTCCTC 85 |||||||||||||| |||||| | ||| ||||||||||| |||||||||||||||||||| Sbjct 321 TAGCAAAAAATGGCGAACAAGCTCTTCATCGTCTGCGCATCTCTCGCTCTCTGCTTCCTC 380 Query 86 CTCACCAACGCTTCCATCTACCGCACCGTCGTTGAGTTCGAAGAAGATGACGCCA-CTAA 144 ||||||||||||||||||||||||| | | | | | ||| | | ||||||||| | || Sbjct 381 CTCACCAACGCTTCCATCTACCGCA-C-T-G-T-CG-TCG-A-ACTATGACGCCAGC-AA 431 Query 145 CCCCATAGGCCCAAAAATGAGGAAATG-CCGCAAGGAGTTTCAGAAAGAACAACACCTAA 203 |||||||||||| || | | |||||| | | | |||||||||||||||||||||||| | Sbjct 432 CCCCATAGGCCC-AAGA-CA-GAAATGTCAG-AGGGAGTTTCAGAAAGAACAACACCTTA 487 Query 204 GAGCTTGCCAGCAATTGATGCTCCAGCAAGCAAGGCAAGGCCGTAGCGATGAGTTTGATT 263 |||||||||||| |||||||| | ||||| || ||||||| | | | || | || Sbjct 488 GAGCTTGCCAGCGATTGATGCGCAAGCAAATGAGACAAGGCCAT-G-G-TG-G--TG--- 538 Query 264 TCGAAGACGACATGGAGAACCCACAGGGACAACAGCAGGAACAACAGCTATTCCAGCAGT 323 ||||||||||| ||||| || | | ||| | || | | |||| ||||| ||| Sbjct 539 --GAAGACGACATCGAGAA-CC-C---G----CAG-A-GACCCTC-GCTACTCCAGAAGT 584 Query 324 GCTGCAACGAGCTTCGCCAGGAAGAGCCAGATTGTGTTTGCCCCACCTTGAAACAAGCTG 383 |||||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 585 GCTGCAGCGAGCTTCGCCA-GAAGACCCAGATTGCGTTTGCCCCACCTTGAAACAAGCTG 643 Query 384 CCAAGGCCGTTAGACTCCAGGGACAGCA-C-C-AACCAATGCAAGTCAGGAAAATTTACC 440 |||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||| Sbjct 644 CCAAGGCCGTTAGACTCCAGGGACAGCAGCACCAACCAATGAAAGTCAGGAAAATTTACC 703 Query 441 AGACAGCCAAGCACTTGCCCAACGTTTGCGACATCCCGCAAGTTGATGTTTGTCCCTTCA 500 ||||||| ||| ||||||| ||| ||||| | |||||||||||||||||||| |||||| Sbjct 704 AGACAGCTAAGAACTTGCCTAACATTTGCAAAATCCCGCAAGTTGATGTTTGCCCCTTCC 763 Query 501 ACATCCCTTCATTCCCTTCTTTCTACTAA 529 | ||||||||||||||||||| ||||||| Sbjct 764 AGATCCCTTCATTCCCTTCTTACTACTAA 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25847337726 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5