BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27150.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945343 jgi|Araly1|945343|scaffold_701572.1 689 0.0
Ahg492081 jgi|Araly1|492081|fgenesh2_kg.7__1514__AT4G27140.1 592 2e-168
Ahg492079 jgi|Araly1|492079|fgenesh2_kg.7__1512__AT4G27160.1 335 3e-91
Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421 257 7e-68
> Ahg945343 jgi|Araly1|945343|scaffold_701572.1
Length=547
Score = 689 bits (373), Expect = 0.0
Identities = 487/540 (90%), Gaps = 15/540 (3%)
Strand=Plus/Plus
Query 54 aaaTGGCAAACAAGCTCTTCCTCGTCTGCGCAACTTTCGCCCTCTGCTTCCTCCTCACCA 113
||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 22 AAATGGCGAACAAGCTTTTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCACCA 81
Query 114 ACGCTTCCATCTACCGCACTGTTGTCGAGTTCGACGAAGATGACGCCAGCAACCCCATGG 173
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 82 ACGCTTCCATCTACCGCACCGTCGTCGAGTTCGACGAAGATGACGCCACCAACCCCATGG 141
Query 174 GCCCAAGACAGAAATGTCAGAAGGAGTTTCAGCAATCACAGCACCTAAGAGCTTGCCAGA 233
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 142 GCCCAAGACAGAGATGCCAGAAGGAGTTCCAGCAATCACAGCACCTAAGAGCTTGCCAGA 201
Query 234 AATTGATGC-GCATGCAAATGAGGCAAGGCCGTGGTGGTGGTCCCTCCCTCGACGATGAG 292
||| |||| | | ||||| |||||| | || ||||||| | || ||||||
Sbjct 202 GATTCATGCAG-AAGCAAACAAGGCAA-G--GTCGTGGTGG--------T-GAAGATGAG 248
Query 293 TTCGATTTGGAAGACGACATCGAGAACCCACAAGGCCCCCAGCAGGGACACCAGATCCTC 352
|||||||| |||||||| || ||||||||||| ||||||||||||||||||||| | |||
Sbjct 249 TTCGATTTCGAAGACGATATGGAGAACCCACAGGGCCCCCAGCAGGGACACCAGCTACTC 308
Query 353 CAGCAGTGCTGCAGCGAGCTTCGCCAGGAAGAGCCAGTTTGTGTTTGCCCCACCTTGAGA 412
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 309 CAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAAA 368
Query 413 CAAGCTGCCAGGGCCGTTAGCCTCCAGGGACAACACGGACCATTCCAATCCAGGAAAATT 472
|| || || || |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 369 CAGGCGGCTAGAGCCGTTAGACTCCAGGGACAGCACGGACCATTCCAATCCAGGAAAATT 428
Query 473 TACAAGACAGCTAAGTACTTGCCTAACATTTGCAAGATCCAGCAAGTTGGTGAATGCCCC 532
||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 429 TACCAGACAGCTAAGTACTTGCCTAAGGTTTGCAGGATCCAGCAAGTTGGTGAATGCCCC 488
Query 533 TTCCAGACCACCATCCCTTTCTTCCCTCCTTACTAATAGATTCCAAACAAAAACCCTCGA 592
||||||||||||||||| ||||||||||||||||| |||||||||||||||| || ||||
Sbjct 489 TTCCAGACCACCATCCCCTTCTTCCCTCCTTACTACTAGATTCCAAACAAAA-CCATCGA 547
> Ahg492081 jgi|Araly1|492081|fgenesh2_kg.7__1514__AT4G27140.1
Length=650
Score = 592 bits (320), Expect = 2e-168
Identities = 573/687 (83%), Gaps = 49/687 (7%)
Strand=Plus/Plus
Query 51 aaaaaaTGGCAAACAAGCTCTTCCTCGTCTGCGCAACTTTCGCCCTCTGCTTCCTCCTCA 110
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 AAAAAATGGCAAACAAACTCTTCCTCGTCTGCGCAGCTCTCGCCCTCTGCTTCCTCCTCA 60
Query 111 CCAACGCTTCCATCTACCGCACTGTTGTCGAGTTCGACGAAGATGACGCCAGCAACCCCA 170
|||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||
Sbjct 61 CCAACGCTTCCATCTACCGCACCATCGTCGAGTTCGACGAGGATGACGCCACCAACCCCA 120
Query 171 TGGGCCCAAGAC-A-G-AAATGTCAGAAGGAGTTTCAGCAATCACAGCACCTAAGAGCTT 227
| ||||||| | | | ||||| |||||||| |||||| || ||| |||||||||||||
Sbjct 121 TAGGCCCAAAAGTAAGGAAATGCCAGAAGGAATTTCAGGAAGAACAACACCTAAGAGCTT 180
Query 228 GCCAGAAATTGATGCGCATGCAAATGAGGCAAGGCCGTGGTGGTGGTCCCTCCCTCGACG 287
||||| ||||||||||| |||| |||||||||||| |||
Sbjct 181 GCCAGCAATTGATGCGCCGGCAAGCAAGGCAAGGCCGTA------------------ACG 222
Query 288 ATGAGTTCGATTTGGAAGACGACATCGAGAACCCACAAGGCCCCCAGCAGGGACACCAGA 347
||||| ||||||| ||||||||||| ||||||||||| ||||||||||||| | | ||
Sbjct 223 ATGAGCTCGATTTCGAAGACGACATGGAGAACCCACAGGGCCCCCAGCAGGAAGAGAAGC 282
Query 348 TCCTCCAGCAGTGCTGCAGCGAGCTTCGCCAGGAAGAGCCAGT-TTGTGTTTGCCCCACC 406
| ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct 283 TATTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCA-TATTGTGTTTGCCCCACC 341
Query 407 TTGAGACAAGCTGCCAGGGCCGTTAGCCTCCAGGGACAACACGGACCATTCCAA-TCCAG 465
|||| ||||||||||| ||||||||| ||||||||||| ||| |||| | ||| || ||
Sbjct 342 TTGAAACAAGCTGCCAAGGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTC-AG 400
Query 466 GAAAATTTACAAGACAGCTAAGTACTTGCCTAACA-TTTGCAAGATCCAGCAAGTTGGTG 524
|||||||| | ||||||||||| |||||||||| | ||||||| |||| |||||||| ||
Sbjct 401 GAAAATTTTCCAGACAGCTAAGAACTTGCCTAA-AGTTTGCAACATCCCGCAAGTTGATG 459
Query 525 AATGCCCCTTCCAGACCACCATCCCTTTC-TTCCCTCCTTACTAATAGATTCCAAACAAA 583
||||||||| ||| |||||| | |||||| ||||||| || ||||||||||||
Sbjct 460 TTTGCCCCTTCAAGA------TCCCTT-CATTCCCTTCTTACTACTAAATTCCAAACAAA 512
Query 584 AACCCTCGA-GCGTATGAGAGTGTGGTTGTTGATACATGTTAACACCACACCTCATCGTG 642
| | ||| | |||||||||||||||||||||||||| ||| || | ||||| ||
Sbjct 513 A-CTCTCAAAGCGTATGAGAGTGTGGTTGTTGATAC-------CAC-AC-C-TCATCTTG 561
Query 643 TCTTTTATGAAAATGTAAGTTTTGG-ATGTTTGAGGCTAAATGTATTTAGCACAAGTCCT 701
| ||||||||||||||||| ||| | |||||||||||||| |||| ||||||| | ||||
Sbjct 562 TGTTTTATGAAAATGTAAGCTTTAGTATGTTTGAGGCTAA-TGTAATTAGCACTACTCCT 620
Query 702 TAATAAATAAGAGTTTTGTTTATGTTT 728
|||||||||||||||||||||||||||
Sbjct 621 TAATAAATAAGAGTTTTGTTTATGTTT 647
> Ahg492079 jgi|Araly1|492079|fgenesh2_kg.7__1512__AT4G27160.1
Length=667
Score = 335 bits (181), Expect = 3e-91
Identities = 221/240 (92%), Gaps = 3/240 (1%)
Strand=Plus/Plus
Query 29 AAGAATACAAACACAAATAGCaaaaaaaTGGCAAACAAGCTCTTCCTCGTCTGCGCAACT 88
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAGAAAACATACACAAATAGC-AAAAAATGGCAAACAAGCTCTTCCTCGTCTGCGCAACT 73
Query 89 TTCGCCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACTGTTGTCGAGTTCGAC 148
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 74 CTCGCCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACAGTCGTCGAGTTCGAG 133
Query 149 GAAGATGACGCCAGCAACCCCATGGGCCCAAGACAGAAATGTCAGAAGGAGTTTCAGCAA 208
||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 134 GAAGATGACGCCACCAACCCCATGGGCCCAAGACAGAGATGCCAGAAGGAGTTCCAGCAA 193
Query 209 TCACAGCACCTAAGAGCTTGCCAGAAATTGATGC-GCATGCAAATGAGGCAAGGCCGTGG 267
||||||||||||||||||||||||| || ||||| | | ||||| |||||||| |||||
Sbjct 194 TCACAGCACCTAAGAGCTTGCCAGAGATGGATGCAGAA-GCAAACAAGGCAAGGTCGTGG 252
> Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421
Length=792
Score = 257 bits (139), Expect = 7e-68
Identities = 200/228 (88%), Gaps = 9/228 (4%)
Strand=Plus/Plus
Query 46 TAGCaaaaaaaTGGCAAACAAGCTCTTCCTCGTCTGCGCAACTTTCGCCCTCTGCTTCCT 105
|||| |||||||||| |||||||||||| ||||||||||| || |||| |||||||||||
Sbjct 321 TAGC-AAAAAATGGCGAACAAGCTCTTCATCGTCTGCGCATCTCTCGCTCTCTGCTTCCT 379
Query 106 CCTCACCAACGCTTCCATCTACCGCACTGTTGTCGAGTTCGACGAAGATGACGCCAGCAA 165
|||||||||||||||||||||||||||||| ||||| || | ||||||||||||
Sbjct 380 CCTCACCAACGCTTCCATCTACCGCACTGTCGTCGA-----ACTA---TGACGCCAGCAA 431
Query 166 CCCCATGGGCCCAAGACAGAAATGTCAGAAGGAGTTTCAGCAATCACAGCACCTAAGAGC 225
|||||| |||||||||||||||||||||| |||||||||| || ||| ||||| |||||
Sbjct 432 CCCCATAGGCCCAAGACAGAAATGTCAGAGGGAGTTTCAGAAAGAACAACACCTTAGAGC 491
Query 226 TTGCCAGAAATTGATGCGCATGCAAATGAGGCAAGGCCGTGGTGGTGG 273
||||||| ||||||||||| ||||||||| ||||||| |||||||||
Sbjct 492 TTGCCAGCGATTGATGCGCAAGCAAATGAGACAAGGCCATGGTGGTGG 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5