BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27160.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492079 jgi|Araly1|492079|fgenesh2_kg.7__1512__AT4G27160.1 946 0.0
Ahg945343 jgi|Araly1|945343|scaffold_701572.1 641 0.0
Ahg492081 jgi|Araly1|492081|fgenesh2_kg.7__1514__AT4G27140.1 459 2e-128
Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421 379 1e-104
> Ahg492079 jgi|Araly1|492079|fgenesh2_kg.7__1512__AT4G27160.1
Length=667
Score = 946 bits (512), Expect = 0.0
Identities = 635/690 (92%), Gaps = 26/690 (4%)
Strand=Plus/Plus
Query 1 ACTCAAACCAAAACAAGAAAACATACACAAATAGCAAAACATGGCTAACAAGCTCTTCCT 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1 ACTCAAACCAAAACAAGAAAACATACACAAATAGCAAAAAATGGCAAACAAGCTCTTCCT 60
Query 61 CGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACAGT 120
Query 121 TGTCGAATTCGAAGAAGATGACGCCAGCAACCCCGTAGGTCCAAGACAGAGATGCCAGAA 180
||||| ||||| ||||||||||||| ||||||| | || ||||||||||||||||||||
Sbjct 121 CGTCGAGTTCGAGGAAGATGACGCCACCAACCCCATGGGCCCAAGACAGAGATGCCAGAA 180
Query 181 GGAGTTTCAGCAATCACAACACCTAAGAGCTTGCCAGAGATGGATG-AGCAAGCAAATGA 239
|||||| ||||||||||| ||||||||||||||||||||||||||| || |||| || |
Sbjct 181 GGAGTTCCAGCAATCACAGCACCTAAGAGCTTGCCAGAGATGGATGCAG-AAGC-AA--A 236
Query 240 GGCAAGGACGTGGTGGTGGTCCTTCCCTCGACGATGAGTTCGATTTCGAGGGCCCCCAGC 299
||||| | ||| || | | |||||||||||||||||||||||||||||
Sbjct 237 --CAAGG-CAAGGTCGT-G----------G-CGATGAGTTCGATTTCGAGGGCCCCCAGC 281
Query 300 AGGGATACCAGCTACTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCG 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AGGGACACCAGCTACTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCG 341
Query 360 TTTGCCCCACCTTGAAACAAGCTGCCAGGGCAGTTAGCCTCCAGGGACAGCACGGACCAT 419
||||||||||||||||||| || || || || ||||| ||||||||||||||||||||||
Sbjct 342 TTTGCCCCACCTTGAAACAGGCGGCTAGAGCTGTTAGACTCCAGGGACAGCACGGACCAT 401
Query 420 TCCAATCCAGGAAAATTTACCAGTCAGCTAAGTACTTGCCTAACATTTGCAAGATCCAGC 479
|| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct 402 TCGAATCCAGGAAAATTTACCAGACAGCTAAGTACTTGCCTAACGTTTGCAAAATCCAGC 461
Query 480 AAGTTGGTGAATGTCCCTTCCAGACCACCATCCCTTTCTTCCCTCCTTACTACTAGAGTC 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 462 AAGTTGGTGAATGTCCCTTCCAGAGCACCATCCCTTTCTTCCCTCCTTACTACTAGATTC 521
Query 540 CAAGCCCGGCCTAGCACGATGATCATGAGTGTTGCTATTGATGTATGTTAATACTATACA 599
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 522 CAAG--C--CCTAGCACGATGATCATGAGTGTGGCTATTGATGTATGTTAATACTATACA 577
Query 600 CAGTCATCGTGTGTGTTTTATAAAACTGTAAGCTTAGGATGTTTGAGGCTAATGTAATTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CAGTCATCGTGTGTGTTTTATAAAACTGTAAGCTTAGGATGTTTGAGGCTAATGTAATTA 637
Query 660 GCACTA--CACCGTAATAAATGAGAGGTTT 687
|||||| ||||||||||||||||||||||
Sbjct 638 GCACTATACACCGTAATAAATGAGAGGTTT 667
> Ahg945343 jgi|Araly1|945343|scaffold_701572.1
Length=547
Score = 641 bits (347), Expect = 0.0
Identities = 478/539 (89%), Gaps = 18/539 (3%)
Strand=Plus/Plus
Query 15 AAGAAAACATACACAAATAGCAAAACATGGCTAACAAGCTCTTCCTCGTCTGCGCAACTC 74
||||| |||| ||||||| | || ||||| |||||||| |||||||||||||||||||
Sbjct 3 AAGAACACAT--ACAAATA-C-CAA-ATGGCGAACAAGCTTTTCCTCGTCTGCGCAACTC 57
Query 75 TCGCCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACCGTTGTCGAATTCGAAG 134
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 58 TCGCCCTCTGCTTCCTCCTCACCAACGCTTCCATCTACCGCACCGTCGTCGAGTTCGACG 117
Query 135 AAGATGACGCCAGCAACCCCGTAGGTCCAAGACAGAGATGCCAGAAGGAGTTTCAGCAAT 194
|||||||||||| ||||||| | || |||||||||||||||||||||||||| |||||||
Sbjct 118 AAGATGACGCCACCAACCCCATGGGCCCAAGACAGAGATGCCAGAAGGAGTTCCAGCAAT 177
Query 195 CACAACACCTAAGAGCTTGCCAGAGATGGATG-AGCAAGCAAATGAGGCAAGGACGTGGT 253
|||| |||||||||||||||||||||| ||| || ||||||| |||||||| ||||||
Sbjct 178 CACAGCACCTAAGAGCTTGCCAGAGATTCATGCAG-AAGCAAACAAGGCAAGGTCGTGGT 236
Query 254 GGTG--G-T-CCTTC--CCTCGACGATGAGT-T--CGATTTC-GAGGGCCCCCAGCAGGG 303
|||| | | ||| |||| || || | | || | ||||||||||||||||
Sbjct 237 GGTGAAGATGAGTTCGATTTCGAAGACGA-TATGGAGAACCCACAGGGCCCCCAGCAGGG 295
Query 304 ATACCAGCTACTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTG 363
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ACACCAGCTACTCCAGCAGTGCTGCAACGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTG 355
Query 364 CCCCACCTTGAAACAAGCTGCCAGGGCAGTTAGCCTCCAGGGACAGCACGGACCATTCCA 423
||||||||||||||| || || || || ||||| ||||||||||||||||||||||||||
Sbjct 356 CCCCACCTTGAAACAGGCGGCTAGAGCCGTTAGACTCCAGGGACAGCACGGACCATTCCA 415
Query 424 ATCCAGGAAAATTTACCAGTCAGCTAAGTACTTGCCTAACATTTGCAAGATCCAGCAAGT 483
||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 416 ATCCAGGAAAATTTACCAGACAGCTAAGTACTTGCCTAAGGTTTGCAGGATCCAGCAAGT 475
Query 484 TGGTGAATGTCCCTTCCAGACCACCATCCCTTTCTTCCCTCCTTACTACTAGAGTCCAA 542
||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 476 TGGTGAATGCCCCTTCCAGACCACCATCCCCTTCTTCCCTCCTTACTACTAGATTCCAA 534
> Ahg492081 jgi|Araly1|492081|fgenesh2_kg.7__1514__AT4G27140.1
Length=650
Score = 459 bits (248), Expect = 2e-128
Identities = 547/683 (80%), Gaps = 54/683 (8%)
Strand=Plus/Plus
Query 36 AAAACATGGCTAACAAGCTCTTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTCCTCA 95
|||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAAAAATGGCAAACAAACTCTTCCTCGTCTGCGCAGCTCTCGCCCTCTGCTTCCTCCTCA 60
Query 96 CCAACGCTTCCATCTACCGCACCGTTGTCGAATTCGAAGAAGATGACGCCAGCAACCCCG 155
||||||||||||||||||||||| | ||||| ||||| || |||||||||| |||||||
Sbjct 61 CCAACGCTTCCATCTACCGCACCATCGTCGAGTTCGACGAGGATGACGCCACCAACCCCA 120
Query 156 TAGGTCC--AAG-ACA-GAGATGCCAGAAGGAGTTTCAGCAATCACAACACCTAAGAGCT 211
|||| || ||| | | || |||||||||||| |||||| || ||||||||||||||||
Sbjct 121 TAGGCCCAAAAGTA-AGGAAATGCCAGAAGGAATTTCAGGAAGAACAACACCTAAGAGCT 179
Query 212 TGCCAG-AGATGGATGAGCAAGCAAATGAGGCAAGGACGTGGTGGTG-G-TC-CTTCCCT 267
|||||| | || |||| || |||| |||||||| ||| | || | || || |
Sbjct 180 TGCCAGCA-ATTGATGCGCCGGCAAGCAAGGCAAGGCCGTAACGATGAGCTCGATT---T 235
Query 268 CGACGATGA-GT-TCGATTTC-GAGGGCCCCCAGCAGGGATACCAGCTACTCCAGCAGTG 324
||| || || | || | ||||||||||||||| | | ||||| ||||||||||
Sbjct 236 CGAAGACGACATGGAGAACCCACAGGGCCCCCAGCAGGAAGAGAAGCTATTCCAGCAGTG 295
Query 325 CTGCAACGAGCTTCGCCAGGAAGAGCCAGT-TTGCGTTTGCCCCACCTTGAAACAAGCTG 383
|||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 296 CTGCAACGAGCTTCGCCAGGAAGAGCCA-TATTGTGTTTGCCCCACCTTGAAACAAGCTG 354
Query 384 CCAGGGCAGTTAGCCTCCAGGGACAGCACGGACCATTCCAA-TCCAGGAAAATTTACCAG 442
||| ||| ||||| ||||||||||||||| |||| | ||| || |||||||||| ||||
Sbjct 355 CCAAGGCCGTTAGACTCCAGGGACAGCACCAACCAATGCAAGTC-AGGAAAATTTTCCAG 413
Query 443 TCAGCTAAGTACTTGCCTAACA-TTTGCAAGATCCAGCAAGTTGGTGAATGTCCCTTCCA 501
|||||||| |||||||||| | ||||||| |||| |||||||| || || |||||| |
Sbjct 414 ACAGCTAAGAACTTGCCTAA-AGTTTGCAACATCCCGCAAGTTGATGTTTGCCCCTTCAA 472
Query 502 GACCACCATCCCTTTC-TTCCCTCCTTACTACTAGAGTCCAAGCCCGGC-CT-AGCACGA 558
|| |||||| | |||||| |||||||||| | ||||| | | || | | |
Sbjct 473 GA------TCCCTT-CATTCCCTTCTTACTACTAAATTCCAAACAAAACTCTCAA-A-GC 523
Query 559 TGATCATGAGTGTTGCTATTGATGTATGTTAATACTATACACAGTCATCGTGTGTGTTTT 618
| | ||||| || | | | || |||| |||| | || | ||||| | ||||||||
Sbjct 524 -G-T-ATGAGAGT-G-T---G--GT-TGTTGATACCACAC-C--TCATC-T-TGTGTTTT 567
Query 619 AT-AAAACTGTAAGCTT-AGGATGTTTGAGGCTAATGTAATTAGCACTACACCGTAATAA 676
|| |||| ||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 568 ATGAAAA-TGTAAGCTTTAGTATGTTTGAGGCTAATGTAATTAGCACTACTCCTTAATAA 626
Query 677 ATGAGAGGTTTACTTTATGTTTT 699
|| |||| ||| ||||||||||
Sbjct 627 ATAAGAGTTTTG-TTTATGTTTT 648
> Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421
Length=792
Score = 379 bits (205), Expect = 1e-104
Identities = 415/509 (82%), Gaps = 44/509 (9%)
Strand=Plus/Plus
Query 32 TAGCAAAACATGGCTAACAAGCTCTTCCTCGTCTGCGCAACTCTCGCCCTCTGCTTCCTC 91
|||||||| ||||| |||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 321 TAGCAAAAAATGGCGAACAAGCTCTTCATCGTCTGCGCATCTCTCGCTCTCTGCTTCCTC 380
Query 92 CTCACCAACGCTTCCATCTACCGCACCGTTGTCGAATTCGAAGAAGATGACGCCAGCAAC 151
||||||||||||||||||||||||| | ||||| ||| | | ||||||||||||||
Sbjct 381 CTCACCAACGCTTCCATCTACCGCA-C--TGTCG---TCG-A-ACTATGACGCCAGCAAC 432
Query 152 CCCGTAGGTCCAAGACAGAGATGCCAGAAGGAGTTTCAGCAATCACAACACCTAAGAGCT 211
||| |||| |||||||||| ||| |||| |||||||||| || ||||||||| ||||||
Sbjct 433 CCCATAGGCCCAAGACAGAAATGTCAGAGGGAGTTTCAGAAAGAACAACACCTTAGAGCT 492
Query 212 TGCCAGAGATGGATGAGCAAGCAAATGAGGCAAGGACGTGGTGGTGGTCCTTCCCTCGAC 271
|||||| ||| |||| ||||||||||||| ||||| | ||||||| | ||
Sbjct 493 TGCCAGCGATTGATGCGCAAGCAAATGAGACAAGGCCATGGTGGT-G----------GA- 540
Query 272 GATGAGTTCGATTTCGAGGGCCCCCAGCAGGGATACC-AGCTACTCCAGCAGTGCTGCAA 330
| || ||| |||| | ||| |||| || || |||||||||| |||||||||
Sbjct 541 -A-GA---CGACATCGA--GAACCC-GCAGAGA-CCCTCGCTACTCCAGAAGTGCTGCAG 591
Query 331 CGAGCTTCGCCAGGAAGAGCCAGTTTGCGTTTGCCCCACCTTGAAACAAGCTGCCAGGGC 390
|||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct 592 CGAGCTTCGCCA-GAAGACCCAGATTGCGTTTGCCCCACCTTGAAACAAGCTGCCAAGGC 650
Query 391 AGTTAGCCTCCAGGGACAGCA-CGG-A-CCATTCCAA-TCCAGGAAAATTTACCAGTCAG 446
||||| |||||||||||||| | | ||| | || || ||||||||||||||| |||
Sbjct 651 CGTTAGACTCCAGGGACAGCAGCACCAACCAATGAAAGTC-AGGAAAATTTACCAGACAG 709
Query 447 CTAAGTACTTGCCTAACATTTGCAAGATCCAGCAAGTTGGTGAATGTCCCTTCCAGACCA 506
||||| ||||||||||||||||||| |||| |||||||| || || ||||||||||
Sbjct 710 CTAAGAACTTGCCTAACATTTGCAAAATCCCGCAAGTTGATGTTTGCCCCTTCCAGA--- 766
Query 507 CCATCCCTTTC-TTCCCTCCTTACTACTA 534
|||||| | |||||| ||||||||||
Sbjct 767 ---TCCCTT-CATTCCCTTCTTACTACTA 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5