BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27180.1

Length=2612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916063 jgi|Araly1|916063|Al_scaffold_0008_814                     152    1e-35


> Ahg916063 jgi|Araly1|916063|Al_scaffold_0008_814
Length=216

 Score =  152 bits (82),  Expect = 1e-35
 Identities = 98/105 (93%), Gaps = 3/105 (3%)
 Strand=Plus/Plus

Query  335  TTACAAGGAGAGATGTGAGAATACGATGGACTATGTAAAAAGGCTTAGGCTTTGCATTAG  394
            ||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct  25   TTA-AAGGAGAGATGTGAGAATATGATCGAATATGTAAAAAGGCTTAGGCTTTGCATTAG  83

Query  395  ATGGTTTCAAGAACTCGAGTTAGATTATG-CATTTGAGCAAGAGA  438
            ||||||||||||||||||||||||||| | | |||||||||||||
Sbjct  84   ATGGTTTCAAGAACTCGAGTTAGATTACGTC-TTTGAGCAAGAGA  127



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 98501373570


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5