BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27190.1
Length=2958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492076 jgi|Araly1|492076|fgenesh2_kg.7__1509__AT4G27190.1 3747 0.0
> Ahg492076 jgi|Araly1|492076|fgenesh2_kg.7__1509__AT4G27190.1
Length=2868
Score = 3747 bits (2029), Expect = 0.0
Identities = 2327/2472 (94%), Gaps = 16/2472 (1%)
Strand=Plus/Plus
Query 468 AGATGGCTTGACAAGCGAGAAAGCCCAAAAGATTGGTGTTTGGGGCATGGGAGGAGTAGG 527
|||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 396 AGATGGTTTGATAAGCGATAAAACCCAAAAGATTGGTGTTTGGGGCATGGGAGGAGTAGG 455
Query 528 TAAAACGACATTGGTCAGGACGCTGAACAATAAGCTTCGGGAAGAGGGTGCTACTCAACC 587
||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 456 AAAAACGACATTGGTCAGGACGTTGAACAACAAGCTTCGGGAAGAGGCTGCTACTCAACC 515
Query 588 ATTTGGCTTGGTGATCTTTGTAATAGTTTCCAAAGAGTTTGATCCAAGAGAAGTCCAAAA 647
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 516 ATTTGGCTTGGTGATCTTTGTAATAGTTTCGAAAGAGTTTGATCCAAAAGGAGTCCAAAA 575
Query 648 GCAGATTGCGGAGAGACTGGATATTGATACCCAAATGGAAGAAAGTGAAGAGAAGTTGGC 707
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 576 GCAGATTGCGGAGAGACTGGATATCGACACCCAAATGGAAGAAAGTGAAGAGAAGTTGGC 635
Query 708 AAGAAGGATTTATGTTGGACTGATGAAAGAGAGAAAGTTTCTTCTCATTCTTGATGACGT 767
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 636 AAGAAGGATTTATGTTGGACTGATGAAAGAGAGAAACTTTCTTCTCATTCTTGATGACGT 695
Query 768 TTGGAAACCCATTGATTTGGATCTTTTAGGCATCCCACGAACTGAAGAGAACAAAGGTTC 827
||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||||
Sbjct 696 TTGGAAACCCATTGATTTGGATCTTTTGGGCATTCCACGAAGGGAAGAGAATAAAGGTTC 755
Query 828 AAAAGTCATTCTGACTTCGAGGTTTTTAGAGGTCTGTCGCAGCATGAAG-ACAGATCTTG 886
|||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||
Sbjct 756 AAAAGTCATTCTGACTTCCAGGTTTTTAGAGGTTTGTCGCAGCATG-AGAACAGATCTTG 814
Query 887 ATGTTAGAGTGGATTGCTTACTTGAAGAAGACGCTTGGGAATTGTTTTGCAAAAATGCAG 946
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 815 ATGTTAGAGTGGACTGCTTACTTGAAGAAGACGCTTGGGAATTGTTTTGCAGAAATGCAG 874
Query 947 GGGATGTTGTGAGGTCAGACCATGTTAGG-AAGATTGCAAAAGCTGTTTCACAAGAATGT 1005
|||||||||||| |||||||||||||||| | ||||||||||| ||||||| || |||
Sbjct 875 GGGATGTTGTGAAGTCAGACCATGTTAGGTCA-ATTGCAAAAGCCGTTTCACTTGAGTGT 933
Query 1006 GGTGGATTGCCTCTTGCTATCATCACAGTCGGAACAGCTATGCGGGGAAAG-AAAAATGT 1064
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 934 GGTGGATTGCCTCTGGCTATCATCACAGTCGGAACAGCTATGCGGGG-AAGTAAAAATGT 992
Query 1065 CAAGCTATGGAATCATGTCTTGAGTAAGCTAAGTAAATCAGTACCTTGGATCAAGAGCAT 1124
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 993 CAAGCTGTGGAATCATGTCTTGAGTAAGCTAAGTAAATCAGTACCTTGGATCAAAAGCAT 1052
Query 1125 TGAAGAGAAGATCTTCCAGCCATTGAAATTGAGCTACGATTTCTTGGAAGACAAGGCAAA 1184
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1053 TGAAGAGAAGATCTTCCAGCCATTGAAATTGAGCTACGATTTTTTGGAAGGCAAGGCAAA 1112
Query 1185 GTTTTGTTTTCTCCTTTGTGCTTTGTTTCCAGAAGACTACTCGATTGAAGTTACAGAGGT 1244
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
Sbjct 1113 GTTTTGTTTTCTCCTTTGTGCTTTGTTTCCTGAAGACTACTCTATTGAAGTTTCAGAGCT 1172
Query 1245 TGTAAGATATTGGATGGCTGAAGGATTCATGGAGGAACTCGGTTCCCAAGAGGACTCCAT 1304
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1173 TGTAAGATATTGGATGGCTGAAGGATTCATGGAGGAACAAGGTTCCCAAGAGGAATCCAT 1232
Query 1305 GAACGAGGGAATCACAACTGTGGAGAGTTTAAAGGATTATTGTTTGTTAGAAGATGGTGA 1364
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GAACGAGGGAATCGCAATTGTGGAGAGTTTAAAGGATTATTGTTTGTTAGAAGATGGTGC 1292
Query 1365 TCGTAGAGACACGGTGAAGATGCATGATGTTGTCCGCGATTTCGCCATATGGATCATGTC 1424
||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1293 TCGTAGAGACACGGTTAAGATGCACGATGTTGTCCGTGATTTTGCCATATGGATCATGTC 1352
Query 1425 TTCCTCACAAGATGATTCCCATTCCCTTGTCATGTCTGGAACGGGTTTGCAAGATATTAG 1484
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 1353 TTCCTCACAAGATGATTGCCATTCCCTTGTCATGTCTGGTACAGGTTTGCAAGATATTAG 1412
Query 1485 ACAAGATAAGCTTGCTCCTTCTCTTCGAAGGGTTTCTTTGATGAACAATAAACTAGAAAG 1544
|||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1413 ACAAGATAAGTTTGTTTCTTCTCTTGGAAGGGTTTCTTTGATGAACAATAAACTAGAAAG 1472
Query 1545 CCTTCCTGATCTTGTAGAAGAGTTC-TGCGTAAAAACCTCAGTCTTACTGCTACAAGGCA 1603
|||||||||||| | ||||||| || ||||| ||||||||| ||||||||||||||| |
Sbjct 1473 CCTTCCTGATCTCGCAGAAGAG-TCATGCGTCAAAACCTCAACCTTACTGCTACAAGGAA 1531
Query 1604 ATTTTCTTCTAAAGGAAGTACCCATTGGATTCTTGCAAGCATTTCCAACTCTTCGAATCT 1663
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1532 ACTCTCTTCTAAAGGAAGTACCCATTGGATTCTTGCAAGCATTTCCAGCTCTTCGAATCT 1591
Query 1664 TGAATCTAAGTGGGACTCGCATTAAGTCATTTCCCAGTTGCTCTCTTTTGCGCCTTTTCA 1723
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 1592 TGAATCTAAGTGGGACTCGCATTAAGTCATTTCCAAGTTGCTCTCTTTTGCGTCTTTCCA 1651
Query 1724 GTCTCCATTCTCTCTTCTTAAGAGATTGTTTTAAACTTGTGA-AACTACCTTCACTAGAA 1782
|||| |||||||||||||||||||| |||||||| ||||| | |||||||||||||| ||
Sbjct 1652 GTCTTCATTCTCTCTTCTTAAGAGAATGTTTTAACCTTGT-AGAACTACCTTCACTAAAA 1710
Query 1783 ACCCTTGCCAAACTTGAGCTACTTGATCTCTGTGGCACACATATCCTCGAATTTCCAAGA 1842
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1711 ACCTTTGCCAAACTTGAGCTACTTGATCTCTGTGGCACACATATCCACGAATTTCCAAGA 1770
Query 1843 GGGTTGGAAGAATTAAAGAGATTCAGACACCTTGATCTTTCACGAACACTTCACCTTGAA 1902
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1771 GGGTTGGAAGAATTAAAGAGCTTCAGACACCTTGACCTTTCACGAACACTTCACCTTGAA 1830
Query 1903 AGCATTCCAGCTAGAGTTGTTTCGAGGTTATCAAGTTTGGAGACACTTGACATGACGTCA 1962
||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||
Sbjct 1831 AGCATTCCAGCGAGAGTTGTTTCGCGGTTATCAAGCTTGGAGACACTCGACATGACATCA 1890
Query 1963 AGTCACTACCGCTGGAGCGTACAGGGAGAAACACAAAAAGGGCAAGCAACAGTTGAAGAG 2022
||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 1891 AGTCATTACCGCTGGAGCGTGCAGGAAGAAACACAAAAGGGGCAAGCAACAGTTGAAGAG 1950
Query 2023 ATAGGATGCCTCCAGCGTTTACAGGTTCTTTCCATCAGGCTCCATTCTTCTCCATTTCTT 2082
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1951 ATAGGATGCCTCCAGCGTTTACAGGTTCTTTCTATTAGGCTCCATTCTTCTCCGTTTCTT 2010
Query 2083 TTAAATAAGAGAAACACTTGGATCAAAAGATTGAAGAAATTCCAACTTGTAGTTGGGTCT 2142
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 2011 TTAAATAAGAGAAACACTTGGATCAAAAGATTGAAGAAATTTCAACTTGTCGTTGGCTCT 2070
Query 2143 CGTTACATTTTGCGTACAAGGCACGACAAGAGGAGGCTAACAATAAGTCACCTCAACGTA 2202
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2071 CCTTACATTTCGCGTACAAGACACGACAAGAGGAGGCTAACAATAAGTCACCTCAACGTA 2130
Query 2203 TCACAAGTATCCATCGGGTGGCTGTTGGCTTATACAACATCTCTAGCACTAAACCATTGT 2262
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 2131 TCACAAGTATCCATCGGGTGGCTGTTGGCTTATACAACCTCTTTAGCACTAAACCATTGT 2190
Query 2263 CAGGGGATCGAAGCAATGATGAAGAAATTGGTAAGTGACAACAAGG-GTTTCAAGAATTT 2321
||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||
Sbjct 2191 AAGGGGATCGAAGCAATGATGAAGAAATTGGTGATTGACAACA-GGAGTTTCAAGAATTT 2249
Query 2322 GAAATCTCTGACGATTGAGAACG-TTATCATCAATACGAATTCTTGGGTTGAGATGGTAA 2380
||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 2250 GAAATCTCTGACGATTGAGAACGCTT-TCATCAATACAAATTCTTGGGTTGAGATGGTAA 2308
Query 2381 GCACTAACACTTCAAAACAATCCTCTGACATACTAGACCTTCTTCCAAATTTGGAGGAAC 2440
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2309 ACACTAAAACTTCAAAACAATCCTCTGACAGGCTAGACCTTCTTCCAAATTTGGAGGAAC 2368
Query 2441 TTCATCTGCGTCGTGTTGACTTGGAAACCTTCTCAGAGCTACAAACACATCTCGGGTTGA 2500
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2369 TTCATCTGCGTCGTGTTGACTTGGAAACCTTCTCAGAACTACAAACACATCTCGGGTTGA 2428
Query 2501 AACTGGAAACACTGAAGATAATCGAGATCACCATGTGTCGCAAGCTTCGAACACTACTCG 2560
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429 GGCTGCAAACACTGAAGATAATCGAGATCACCATGTGTCGCAAGCTTCGAACACTACTCG 2488
Query 2561 ACAAAAGAAATTTCTTGACTATCCCAAACCTGGAGGAGATAGAGATTAGCTACTGCGACT 2620
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2489 GCAAAAGAAACTTCTTGACTATCCCAAAACTGGAGGAGATAGAGATTAGCTACTGCGACT 2548
Query 2621 CTTTGCAGAATCTACACGAGGCTTTGTTATACCATCAACCTTTCGTACCAAATCTACGTG 2680
| ||||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 2549 CATTGCAGAATCTACACAAGGCTTTGATATACCATGAACCTTTCCTACCAAATTTACGTG 2608
Query 2681 TCTTGAAACTGAGAAATCTTCCAAATCTTGTGAGTATATGCAACTGGGGAGAGGTTTGGG 2740
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2609 TCTTGAAACTGAGAAATCTTCCAAATCTTGTGAGTATATGCAACTGGGGAGAGGCTTGGG 2668
Query 2741 AATGCTTGGAACAAGTGGAAGTGATTCACTGTAATCAGCTGAATTGTTTACCCATAAGCT 2800
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2669 AATGCCTGGAACAAGTGGAAGTGATTCACTGTAATCAGCTGAATTGTTTACCCATAAGCT 2728
Query 2801 CTACCTGTGGAAGAATCAAGAAGATAAAAGGAGAATTGAGTTGGTGGGAGCGTTTGGAAT 2860
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2729 CTACATGTGGAAGAATCAAGAAAATAAAAGGAGAATCGAGTTGGTGGGAGCGTTTGGAAT 2788
Query 2861 GGGACGATCCCTCTGCTTTAACCACTGTTCAACCATTTTTCAATCCAGTG-AGGGAAGTT 2919
|||||||||||||| ||||| ||||||||| ||| ||||||||||||||| | | || ||
Sbjct 2789 GGGACGATCCCTCTACTTTAGCCACTGTTCGACCTTTTTTCAATCCAGTGGACG-AATTT 2847
Query 2920 CCTCTACTCATA 2931
||||| || |||
Sbjct 2848 CCTCTGCTTATA 2859
Score = 566 bits (306), Expect = 4e-160
Identities = 344/363 (95%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTGTTGCGCCCCTGTCATTGGTGAGATTTTGCGTTTGATGTATGAGTCAACGTTC 60
|||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 1 ATGGAGTGTTTAGCCCCTGTCATTGGTGAGACTTTGCGTTTGATGTACGTCTCAACGTTC 60
Query 61 TCAAGAGTCGCTAATGCCATAAAGTTCAAATCAAACGTCAAAGCTCTTAATGAATCACTC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCAAGAGTCGCTAATGCAATAAAGTTCAAATCAAACGTCAAAGCTCTTAATGATTCACTC 120
Query 121 GAGAGATTGACAGAGCTTAAGGGTAACATGAGTGAAGATCATGAAACTTTGCTGACCAAA 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAGATTGACAAAGCTTAAGGGTAACATGAGTGAAGATCATGAAACTTTGCTGACCAAA 180
Query 181 GATAAACCCTTGAGACTCAAGCTAATGCGTTGGCAAAGAGAGGCGGAAGAAGTTATATCT 240
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 181 GATAAACCCTTGAGACTCAAGCTAATGCGTTGGCAAAGAGAAGCAGAAGAAGTTATCTCT 240
Query 241 AAAGCAAGGTTAAAACTTGAGGAACGAGTTTCATGCGGTATGTCCTTGAGACCCAGGATG 300
|||||||||||||||||||||||||| |||||||| |||||||| |||||| | ||||||
Sbjct 241 AAAGCAAGGTTAAAACTTGAGGAACGGGTTTCATGTGGTATGTCATTGAGATCTAGGATG 300
Query 301 AGTAGGAAACTTGTCAAGATTCTCGATGAAGTGAAAATGCTTGAGAAGGATGGAATAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 301 AGTAGGAAACTTGTCAAGATTCTCGATGAAGTGAAAATGCTTGAGAAGGATGGCAGAGAG 360
Query 361 TTT 363
|||
Sbjct 361 TTT 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111680598340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5