BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27230.1
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492075 jgi|Araly1|492075|fgenesh2_kg.7__1508__AT4G27230.1 749 0.0
Ahg950114 jgi|Araly1|950114|scaffold_802001.1 442 2e-123
> Ahg492075 jgi|Araly1|492075|fgenesh2_kg.7__1508__AT4G27230.1
Length=601
Score = 749 bits (405), Expect = 0.0
Identities = 530/585 (91%), Gaps = 30/585 (5%)
Strand=Plus/Plus
Query 76 TCTTGGGTAGTAGAGAGAAATGGCGGGTCGGGGAAAACAACTTGGATCTGGTGCAGCGAA 135
||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 38 TCTTGGGTAGT----AGAAATGGCGGGTCGGGGAAAACAACTAGGATCTGGTGCGGCGAA 93
Query 136 GAAGTCTACTTCTCGTAGTAGCAAGGCTGGGCTTCAATTCCCTGTTGGTCGTATCGCTCG 195
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 94 GAAGTCTACTTCTCGTAGTAGCAAGGCTGGGCTTCAATTCCCAGTGGGTCGTATCGCTCG 153
Query 196 ATTTTTGAAAGCCGGTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGC 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 ATTTTTGAAAGCCGGTAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGC 213
Query 256 CGCCGTTCTTGAATACCTCGCCGCTGAGGTACTTGAGCTTGCTGGGAACGCAGCGAGAGA 315
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 214 CGCCGTTCTTGAATACCTCGCCGCCGAGGTTCTTGAGCTAGCTGGGAACGCAGCAAGAGA 273
Query 316 CAACAAGAAGACCCGTATAGTTCCACGACACATTCAGCTTGCTGTGAGGAATGATGAGGA 375
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 274 TAACAAGAAGACCCGTATAGTTCCTCGACACATTCAGCTTGCTGTGAGGAACGATGAGGA 333
Query 376 GCTAAGCAAGTTGCTTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCA 435
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 ACTAAGCAAGCTACTTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCA 393
Query 436 CAATCTCCTTCTCCCCAAGAAGGCTGGTTCATCTAAGCCTACTGAAGAAGATTAGGTTCA 495
||||||||||||||| |||||| ||||| | || ||||||||||| | || || |
Sbjct 394 CAATCTCCTTCTCCCTAAGAAGTCTGGTCCCTCCAAGCCTACTGA-G--GA--AG----A 444
Query 496 TTACGAAGATAGGGAAAGCTGGAAACTGGTTGATATCAGATAATGCTTAGGA-T-T---- 549
||| | | | ||||||||||| ||||||||||||||||||| |||||| | |
Sbjct 445 TTA-G--G---G--AAAGCTGGAAAATGGTTGATATCAGATAATGGTTAGGACTGTTTTT 496
Query 550 GttttttttttC---ATTTGCTTTTCCTCTGCAGCAATGGAAGCTGTGTGGTTGTACTAG 606
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GTTTTTTTTTTTTTTATTTGCTTTTCCTCTGCAGCAATGGAAGCTGTGTGGTTGTACTAG 556
Query 607 TTGTTAAGGTTACCTTTGTTTCACTTTATGTGAATATATGAAGAA 651
||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 557 TTGTTAAGGATAACTTTGTTTCACTTTGTGTGAATATATGAAGAA 601
> Ahg950114 jgi|Araly1|950114|scaffold_802001.1
Length=434
Score = 442 bits (239), Expect = 2e-123
Identities = 351/404 (87%), Gaps = 11/404 (3%)
Strand=Plus/Plus
Query 93 AAATGGCGGGTCG-GGGAAAACAACTTGGATCTGGTGCAGCGAAG-AAGTCTACTTCTCG 150
||||||| ||||| || ||||| |||||||| ||||| |||||| ||| | || |||||
Sbjct 20 AAATGGCTGGTCGTGGAAAAAC-TCTTGGATCCGGTGCGGCGAAGAAAG-CCACATCTCG 77
Query 151 TAGTAGCAAGGCTGGGCTTCAATTCCCTGTTGGTCGTATCGCTCGATTTTTGAAAGCCGG 210
|||||||| ||||| |||||||| || || ||||||||||||||||| |||||||||||
Sbjct 78 GAGTAGCAAAGCTGGTCTTCAATTTCCGGTGGGTCGTATCGCTCGATTCTTGAAAGCCGG 137
Query 211 TAAGTACGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAATA 270
||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 138 TAAATACGCCGAACGTGTTGGTGCTGGTGCTCCGGTCTATCTCGCCGCCGTTCTTGAGTA 197
Query 271 CCTCGCCGCTGAGGTACTTGAGCTT-GCTGGGAACGCAGCGAGAGACAACAAGAAGACCC 329
| ||||| ||||| ||||| || |||||||||||||| ||||||||||||||||| |
Sbjct 198 TTTGGCCGCCGAGGTTCTTGA-ATTAGCTGGGAACGCAGCAAGAGACAACAAGAAGACAC 256
Query 330 GTATAGTTCCACGACACATTCAGCTTGCTGTGAGGAATGATGAGGAGCTAAGCAAG-TTG 388
|||| ||||| || || |||||||| ||||| || || |||||||||||||||||| ||
Sbjct 257 GTATTGTTCCTCGTCATATTCAGCTCGCTGTTAGAAACGATGAGGAGCTAAGCAAGCTT- 315
Query 389 CTTGGAGATGTGACAATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTC 448
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTTCTC 375
Query 449 CCCAAGAAGGCTGGTTCATCTAAGCCTACTGAAGAAGATTAGGT 492
|| |||||| ||||| | || ||||| || | |||||||||||
Sbjct 376 CCTAAGAAGTCTGGTCCTTCAAAGCC-ACAG--GAAGATTAGGT 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26381058564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5