BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27240.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889430 jgi|Araly1|889430|Al_scaffold_0007_1416 1938 0.0
Ahg950113 jgi|Araly1|950113|scaffold_802000.1 616 2e-175
> Ahg889430 jgi|Araly1|889430|Al_scaffold_0007_1416
Length=1293
Score = 1938 bits (1049), Expect = 0.0
Identities = 1216/1296 (94%), Gaps = 13/1296 (1%)
Strand=Plus/Plus
Query 198 atggaagcttcaagcacaagaagcgagaagaagaagaagaagaagaCGATACAGAGAGAA 257
|||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||
Sbjct 1 ATGGAAGCTTCAAGCACAAGAAGCGAGAAG-A-AA-AAGAAGAAGACGATTCAGAGAGAA 57
Query 258 AACACCGATACTCA-AAAGaaaaaaaaGCTACCCAGTGTTTGGTTTTCACTTAAGAAATC 316
|| ||||||| ||| ||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 58 AATACCGATATTCAGAAA-AACAAAAAGCTACCCAGTGTTTGGTTTTCACTGAAGAAATC 116
Query 317 TCTCCCCTGCAAATCTGATGTCTCCGATGTCCACATTCCGAGATCCAAAAAAGAGCT-AG 375
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 117 TCTCCCCTGCAAATCTGATGTCTCCGATGTCCACATTCCGAGATCCAGAAAAGATCTCA- 175
Query 376 CTCCCATATCCACTAAGAGAACAACAACCTCCTCCGGCGGCGGGGTCGGCGGCAGGTCCG 435
||||||||||||||||||||||||||||| ||||||| || || ||||| ||| ||||||
Sbjct 176 CTCCCATATCCACTAAGAGAACAACAACCACCTCCGGAGGAGGAGTCGGTGGCCGGTCCG 235
Query 436 GTTGTTCAAGATCCATAGCCAATCTTAAAGACGTAATCCATGGAAACCAACGGCATTTAG 495
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 236 GTTGTTCCCGATCCATAGCCAATCTCAAAGACGTAATCCATGGAAACCAACGGCATTTGG 295
Query 496 AGAAGCCGCTTTGCTCTAGCCCTCGTTCTATAGGAAGCAGCGAGTTTCTCAATCCCATTA 555
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 296 AGAAGCCGCTTTGCTCTAGCCCTCGTTCTATCGGAAGCAGCGAGTTTCTCAATCCCATTA 355
Query 556 CTCACGATGTAATCTTTAGCAACTCCACCTGCGAGCTCAAGATCACCGCCGCCGGAGCAA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTCACGATGTAATCTTTAGCAACTCCACCTGCGAGCTCAAGATCACCGCCGCCGGAGCAA 415
Query 616 CAGAATTCGTCGGGAATCTTA-GACCAGGGACGCCGGTCAATTACTCTTCTTCACGCCGT 674
| |||||||| |||| ||| | | |||||||||||||||||||||||||||||||||||
Sbjct 416 CTGAATTCGTGGGGACTCTGACG-CCAGGGACGCCGGTCAATTACTCTTCTTCACGCCGG 474
Query 675 AGCCAAACTTCGAGAAAGGCTTCTTCTTTAGATAGAGAAGGATTAGGGTTTCACCAGAGC 734
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 475 AGCCAAGCTTCGAGAAAGGCTTCTTCTTTAGACAGAGAAGGATTAGGGTTTCACCAAAGC 534
Query 735 AGAAGAGAGA-ATGATAGAGAAGCCGCCATTAACGGAGACAATTCCTCTGTTTCTTGCCA 793
|||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 535 AGAAGAGAGAGA-GATAGAGATTCCGCCATTAATGGAGACAATTCCTCTGTTTCTTGCCA 593
Query 794 TAAATGCGGCGAGAAATTTAGCAAACTCGAAGCTGCAGAAGCTCATCATCTAACCAAACA 853
|||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 594 TAAATGTGGCGAGAAATTTAGCAAACTCGAAGCTGCAGAAGCTCACCATCTCACTAAACA 653
Query 854 CGCCGTGACTGAGCTAATGGAAGGAGACTCGTCGAGGAGAATAGTGGAGATAATCTGCAG 913
||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 654 CGCCGTGACTGAGCTCATGGAAGGAGACTCATCGAGGAAAATTGTGGAGATAATCTGCAG 713
Query 914 AACAAGCTGGTTAAAGACAGAGAATCAAGGAGGGAGAATCGATCGGATTTTGAAAGTACA 973
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 714 AACAAGCTGGTTAAAGACAGAGAATCAAGGAGGGAGAATCGATCGGATCTTGAAAGTGCA 773
Query 974 CAACATGCAAAAAACCTTAGCGAGATTCGAAGAATACAGAGATACAGTGAAGATCAGAGC 1033
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 CAACATGCAAAAAACCTTAGCAAGATTCGAAGAATACAGAGATACAGTGAAGATCAGAGC 833
Query 1034 AAGCAAGTTACAAAAGAAACATCCGAGATGTATCGCCGACGGAAACGAGCTTCTCAGGTT 1093
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAGCAAGCTACAAAAGAAACACCCGAGATGTATCGCCGACGGAAACGAGCTTCTCAGGTT 893
Query 1094 TCACGGCACCACTGTGGCTTGCGCTTTGGGGATAAACGGGTCGACGAGTCTGTGTTCGTC 1153
|||||||||||| || || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 894 TCACGGCACCACCGTCGCGTGCGCTTTAGGGATAAACGGGTCGACGAGTCTGTGTTCTTC 953
Query 1154 GGAAAAGTGTTGCGTTTGTCGGATTATACGAAATGGGTTCTCGGCGAAACGGGAGATGAA 1213
|||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 954 GGAAAAATGCTGCGTTTGCCGGATTATACGAAACGGGTTCTCGGCGAAACGGGAGATGAA 1013
Query 1214 TAACGGAATTGGGGTTTTTACTGCGTCGACGAGTGAGAGGGCGTTTGAGTCTATTGTGAT 1273
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1014 TAACGGAATTGGGGTTTTTACTGCGTCGACGAGTGAGAGGGCGTTTGAGTCAATTGTGAT 1073
Query 1274 TGGA-GATGGTGGTGGTGGTGATCGGAAGGCGTTGATTGTGTGTCGAGTGATTGCCGGGA 1332
|| | || ||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 1074 TG-ACGACGGTGGTGGTGGTGATCGGAAGGCGTTGATAGTGTGTCGGGTAATCGCCGGGA 1132
Query 1333 GGGTTCATCGGCCGGTGGAGAATGTAGAGGAGATGGGTGGGTTGTTGAGTGGGTTTGATT 1392
||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||
Sbjct 1133 GGGTTCATCGGCCGGTGGAGAATTTAGAGGAGATGAGTGGGTTATTGAATGGGTTTGATT 1192
Query 1393 CATTGGCTGGTAAAGTTGGGTTGTACACAAATGTTGAGGAGCTCTATTTGCTCAATTCTC 1452
| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1193 CGTTGGCCGGTAAAGTTGGGTTGTACACAAATGTTGAGGAGCTTTATTTGCTAAATTCTC 1252
Query 1453 GAGCTTTGCTTCCTTGTTTTGTGCTAATCTGCAAAC 1488
||||||||||||||||||||||||| || |||||||
Sbjct 1253 GAGCTTTGCTTCCTTGTTTTGTGCTGATTTGCAAAC 1288
> Ahg950113 jgi|Araly1|950113|scaffold_802000.1
Length=1466
Score = 616 bits (333), Expect = 2e-175
Identities = 669/825 (81%), Gaps = 48/825 (6%)
Strand=Plus/Plus
Query 709 GAGAAGGATTAGGGTTTCAC-CAGAGCAGAAGAG----A---GA-ATG-ATAGAGAAGCC 758
||||||| |||||||||||| || | ||| |||| | || ||| | |||||| |
Sbjct 631 GAGAAGGGTTAGGGTTTCACACA-AACAGGAGAGTTTCATTGGAGATGAACAGAGAAAAC 689
Query 759 GCCATTAACGGA-G--ACAATTCCTCTGTTTCTTGCCATAAATGCGGCGAGA-AATTTAG 814
| |||||| ||| | ||||||||||||||||||| |||||||| || || | | || |
Sbjct 690 GTCATTAATGGAGGCAACAATTCCTCTGTTTCTTGTCATAAATGTGGTGA-ACAGTTCAA 748
Query 815 CAAACTCGAAGCTGCAGAAGCTCATCATCTAACCAAACACGCCGTGACTGAGCTAATGGA 874
||||| |||||||| |||||||||||||| | ||||||||||| || ||||| | ||
Sbjct 749 TAAACTTGAAGCTGCTGAAGCTCATCATCTCTCTAAACACGCCGTAACAGAGCTTGTAGA 808
Query 875 AGGAGACTCGTCGAGGAGAATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAAGA-CAG 933
|||||| || || || | |||||||||||||||||||||||||||||||||||| | |||
Sbjct 809 AGGAGATTCATCAAGAAAAATAGTGGAGATAATCTGCAGAACAAGCTGGTTAAA-ATCAG 867
Query 934 AGAATCAAGGAGGGAGAATCGATCG-GATTTTGAAAGTACACAACATGCAAAAAAC-CTT 991
|||| ||| | || ||||||||| | | |||| ||||||||||||||||||||||| ||
Sbjct 868 AGAACCAATGTGGAAGAATCGATAGAG-TTTTAAAAGTACACAACATGCAAAAAACACT- 925
Query 992 AGCGAGATTCGAAGAATACAGAGATACAGTGAAGATCAGAGCAAGCAAG-TTACAAAAGA 1050
||| | || || ||||||||||| ||||| || |||||||||||||| || |||||||
Sbjct 926 AGCTCGTTTTGAGGAATACAGAGAGACAGTAAAAATCAGAGCAAGCAAACTT-CAAAAGA 984
Query 1051 AACATCCGAGATGTATCGCCGACGGAAACGAGCTTCTCAGGTTTCACGGCACCACTGTGG 1110
| ||||| |||||| |||| ||||| |||||||| || ||||| ||||| ||||| || |
Sbjct 985 AGCATCCAAGATGTCTCGCAGACGGTAACGAGCTACTTAGGTTCCACGGAACCACAGTTG 1044
Query 1111 CTTGCGCTTTGGGGATAAACGGGTCGACGAGTCTGTGTTCGTCGGA-AAAGTGTTGCGTT 1169
|||| | ||| || ||||||||||| |||||||| || || |||| ||| ||||| |||
Sbjct 1045 CTTGTGGTTTAGGTATAAACGGGTCAACGAGTCTTTGCACGGCGGAGAAA-TGTTGTGTT 1103
Query 1170 TGTCGGATTATACGAAATGGGTTCTCGGCGAAACGGGAGATGAATAACGGAATTGGGGTT 1229
|||||||||||||| || ||||||||| |||||||||||| |||||| || |||| |||
Sbjct 1104 TGTCGGATTATACGGAACGGGTTCTCGTCGAAACGGGAGAAGAATAATGGGGTTGGTGTT 1163
Query 1230 TTTACTGCGTCGACGAGTGAGAGG-GCGTTTGAGTCTATTGTG---A-T--TGGAGATG- 1281
|| || |||||||| |||| || | ||||||||||| ||| || | | ||||||||
Sbjct 1164 TTCACGGCGTCGACTAGTG-GAAGAGCGTTTGAGTCGATTTTGGTTAATGGTGGAGATGA 1222
Query 1282 GTGGTGGTG-G-T-GATCGGA-----AGGC--GT-T-GATTGTGTGTCGAGTGATTGCCG 1329
| | ||| | | | ||||||| ||| || | |||||||||| | || |||||||
Sbjct 1223 GAG-TGGAGAGGTTGATCGGACGGTGAGGAAAGTGTTGATTGTGTGTAGGGTTATTGCCG 1281
Query 1330 GGAGGGTTCATCGGCCGGTGGAGAATGTAGAGGAGATGGGTGGGTTGTTGAGTGGGTTTG 1389
| || ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct 1282 GAAGAGTTCATCGGCCGGTGGAGAATGTGGAGGAGATGAATGGGTTGATGAGTGGGTTTG 1341
Query 1390 ATTCATTGGCTGGTAAAGTTGGGTTGTACACAAATGTTGAGGAGCTCTATTTGCTCAATT 1449
|||| |||||||| |||||||| ||||| |||||||| |||||||| |||||||| |||
Sbjct 1342 ATTCTTTGGCTGGCAAAGTTGGTTTGTATACAAATGTGGAGGAGCTTTATTTGCTTAATC 1401
Query 1450 CTCGAGCTTTGCTTCCTTGTTTTGTGCTAATCTGCAAACCTTAAA 1494
|| ||||||||||||||| |||||| | || ||||| || ||||
Sbjct 1402 CTAAAGCTTTGCTTCCTTGCTTTGTGGTTATTTGCAAGCCCTAAA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5