BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27250.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889429 jgi|Araly1|889429|Al_scaffold_0007_1415 1605 0.0
> Ahg889429 jgi|Araly1|889429|Al_scaffold_0007_1415
Length=1065
Score = 1605 bits (869), Expect = 0.0
Identities = 995/1057 (94%), Gaps = 4/1057 (0%)
Strand=Plus/Plus
Query 1 ATGGAATTGCAAGGAGAGGAAAGCAAAACGGCGACGTATTGCGTGACGGGTGCAAGTGGA 60
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 ATGGAATTGCAAGGAGTGGAAAGCAAAGCGACGACGTATTGCGTGACGGGTGCAAGTGGA 60
Query 61 TACATCGGTTCTTGGTTGGTTAAGTCTCTTCTCCAAAGAGGTTACACAGTCCATGCCACT 120
||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 61 TACATAGGTTCTTGGTTGGTTAAGTCTCTTCTCGAAGGAGGCTACACAGTCCATGCCACT 120
Query 121 CTCAGAGATCTTGCAAAATCTGAATACTTTCAATCTAAATGGAAGGAAAATGAACGGCTC 180
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAGAGATCTTGGAAAATCTCAATACTTTCAATCTAAATGGAAGGAAAATGAACGGCTT 180
Query 181 AGATTATTCCGAGCGGATCTTCGAGATGACGGCAGCTTTGACGACGCCGTTAAGGGTTGT 240
|||||||||| ||||||||||| ||||||||||||||| || || ||| ||||||| ||
Sbjct 181 AGATTATTCCAAGCGGATCTTCAAGATGACGGCAGCTTCGATGAGGCCTTTAAGGGCTGC 240
Query 241 GACGGCGTCTTCCATGTCGCCGCTTCCATGGAGTTTGATATCTCATCAGATCACGTTAAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GACGGCGTCTTCCATGTCGCCGCTTCCATGGAGTTTGATATCTCATCAGATCACGTCAAT 300
Query 301 CTCGAGAGTTATGTCCAGAGCAAAGTCATAGAACCGGCGCTAAAAGGCGTACGGAATGTA 360
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 301 CTCGAGAGTTATGTCCAGAGCAAAGTCATAGATCCGGCGGTAAAAGGCGTACGGAATGTT 360
Query 361 CTTAGTTCTTGTCTAAAGTCAAAGTCAGTCAAAAGAGTTGTCTTCACATCATCCATCAGC 420
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTGGTTCTTGTCTTAAGTCAAAGTCAGTCAAAAGAGTTGTCTTCACATCATCCATCAGC 420
Query 421 ACTCTCACTGCTAAAGATGAGAATGAACGGATGAGATCTTTCGTGGATGAAACATGCAAG 480
||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 421 ACTCTCACTGCCAAAGATGATAATGAACGGATGACATCTTTCGTGGATGAAACTTGCAAG 480
Query 481 GCTCATGTTGATCATGTCCTTAAAACACAAGCAAGTGGATGGATTTATGTATTATCGAAG 540
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 GCTCATGTTGATCATGTCATTAAAACACAAGCAAGTGGATGGATTTATGTACTATCGAAG 540
Query 541 CTCGTATCAGAGGAAGAAGCATTTCGGTATGCGAAAGAGAGAGGAATGGATCTTGTTTCA 600
|||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 541 CTCGTATCAGAGGAAGAAGCATTTAGATATGCAAAAGAGAGAGGAATGGATCTTGTTTCA 600
Query 601 GTCATTACAACAACTGTTTCAGGTCCATTCCTTACTCC-ATTTGTCCCATCAAGCGTTCA 659
||||||||||| ||||||||||||||||| |||||||| | | |||||||||||||||||
Sbjct 601 GTCATTACAACTACTGTTTCAGGTCCATTTCTTACTCCTAAT-GTCCCATCAAGCGTTCA 659
Query 660 AGTTCTCTTGTCTCCAATTACAGGTGACTCAAAGTTGTTTGCGATATTATCAGCTGTGAA 719
||||||||| || ||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 660 AGTTCTCTTATCCCCAATAACAGGTGACTCAAAGTTGTTTCCAATATTATCAGCTGTGAA 719
Query 720 CAAAAGAATGGGTTCGATTGCTTTAGTACACATTGAAGATATTTGCAGGGCTCATCTGTT 779
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 720 CAAAAGAATGGGTTCGATTGCTTTGGTACACATTGAAGATATTTGCAGAGCGCATCTGTT 779
Query 780 TTTGATGGAACA-ACCAAAGGCTAAAGGTCAATATATATGTTGTGTTGACAATATTGATA 838
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTTGATGGAACAGAC-AAAGGCTAAAGGTCAATATATATGTTGTGTTGACAATATTGATA 838
Query 839 TGCATGAGTTGATGCTTCATCACTTCTCTAAGGACTATCTTTGTAAAGTTCAAAAGGTAA 898
||||||| ||||||||||||||||| |||||| | |||||||||||||||| ||||||||
Sbjct 839 TGCATGAATTGATGCTTCATCACTTTTCTAAGAAGTATCTTTGTAAAGTTCTAAAGGTAA 898
Query 899 ATGAAGACGAGGAAGAGAGAGAATGTATGAAGCCTATAATTTCTTCAAAGAAGTTAAGAG 958
|||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGAAGACGACAAAGACAGACAATGTATGAAGCCTATAATTTCTTCAAAGAAGTTAAGAG 958
Query 959 AATTGGGGTTTGAGTACAAATATGGTATTGAAGAAATTGTTGATCAAACCATTGATGCTT 1018
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 959 AATTGGGTTTTGAGTACAAATATGGTATTGAAGAAATTGTTGATCAGACAATTGATGCTT 1018
Query 1019 CTATCAAGATTAAGTTCCCTACCTTGAACCACAAACT 1055
|||||||| |||||||||||||| |||||||||||||
Sbjct 1019 CTATCAAGTTTAAGTTCCCTACCATGAACCACAAACT 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5