BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27260.1
Length=2246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492072 jgi|Araly1|492072|fgenesh2_kg.7__1505__AT4G27260.1 3518 0.0
Ahg950094 jgi|Araly1|950094|scaffold_801981.1 1836 0.0
Ahg473020 jgi|Araly1|473020|fgenesh2_kg.1__2974__AT1G28130.1 82.4 1e-14
> Ahg492072 jgi|Araly1|492072|fgenesh2_kg.7__1505__AT4G27260.1
Length=2227
Score = 3518 bits (1905), Expect = 0.0
Identities = 2136/2246 (95%), Gaps = 22/2246 (1%)
Strand=Plus/Plus
Query 1 CTCACACACTAAAAGCTTGCAAAAACCATAAGCTTATCTACTTACTCATCTCTCTCACAA 60
|||||||||||||||||||||||||||||||| | | | |||||||||||||
Sbjct 1 CTCACACACTAAAAGCTTGCAAAAACCATAAG--------C-T--T-ATCTCTCTCACAA 48
Query 61 ATCA-TTTTCTCAGACTTCTCTCTTTCTCTTAAACCATGCCTGAGGCACCAAAGAAAGAA 119
|||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 49 ATCATTTTTTTCAAACTTCTCTC--TCTCTTAAACCATGCCTGAGGCACCAAAGAAGGTA 106
Query 120 TCTTTAGAGGTTTTCGATCTGACGCTTGACCaaaaaaaCAAGCAAAAGCTTCAGTTGATC 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TCTTTAGAGGTTTTTGATCTGACGCTTGACCAAAAAAACAAGCAAAAGCTTCAGTTGATC 166
Query 180 GAAGAACTCACCTCTAACGCCGACCAAGTCCAAAGACAAGTCTTGGAGGAGATCTTGACC 239
|||||||| |||||||||||||||||| |||| |||| |||||||||||||||||| ||
Sbjct 167 GAAGAACTTACCTCTAACGCCGACCAATTCCAGAGACGTGTCTTGGAGGAGATCTTGTCC 226
Query 240 CGCAATGCTGACGTGGAGTATCTCAGGCGACACGACCTCAACGGTCGCACTGACCGTGAG 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 227 CGCAATGCTGACGTGGAGTATCTCCGGCGACACGACCTCAACGGTCGCACTGACCGAGAG 286
Query 300 ACTTTCAAAAACATCATGCCCGTTATCACCTACGAAGATATTGAGCCTGAGATCAACAGG 359
|| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 287 ACCTTCAAAAACGTCATGCCGGTTATCACCTACGAAGATATTCAGCCTGAGATCAACAGG 346
Query 360 ATCGCTAATGGTGATAAATCACCTATCCTCTCTTCCAAACCCATCTCTGAGTTCCTCACA 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 347 ATCGCTAATGGTGATAAATCACCTATCCTCTCTTCAAAACCCATCTCTGAGTTTCTCACA 406
Query 420 AGCTCTGGGACATCTGGTGGGGAGAGGAAGCTAATGCCAACAATCGAAGAGGAGCTAGAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 407 AGCTCTGGGACATCTGGTGGGGAGAGGAAGCTAATGCCAACAATCGAAGAGGAACTAGAC 466
Query 480 AGGAGATCACTCCTCTACAGTCTCTTGATGCCTGTGATGAGCCAGTTCGTTCCTGGTCTC 539
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 467 AGAAGATCTCTCCTCTACAGTCTCTTGATGCCTGTGATGAGCCAGTTTGTTCCTGGTCTC 526
Query 540 GAAAACGGCAAAGGAATGTATTTCTTGTTCATCAAGTCCGAATCCAAGACTCCAGGAGGC 599
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 527 GAAAATGGCAAAGGAATGTATTTCTTGTTCATCAAGTCCGAATCCAAGACACCAGGAGGC 586
Query 600 CTCCCTGCTCGTCCTGTCTTAACCAGTTACTACAAATCTTCCCATTTCAAAGAAAGACCC 659
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 587 CTCCCTGCTCGTCCCGTCTTAACCAGCTACTACAAGTCTTCCCATTTCAAAGAAAGACCC 646
Query 660 TATGATCCTTACACCAACTACACAAGCCCTAACGAGACCATCCTTTGCTCTGACTCTTAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TATGATCCTTACACCAACTACACAAGCCCTAACGAGACCATCCTTTGCTCTGACTCTTAC 706
Query 720 CAGAGCATGTACTCTCAGATGCTTTGTGGCTTATGTCAACACCAGGAGGTTCTTAGAGTC 779
||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 707 CAGAGCATGTATTCTCAGATGCTCTGTGGCTTATGTCAACACCAGGAGGTTCTTCGAGTC 766
Query 780 GGCGCTGTCTTCGCCTCTGGATTCATCAGAGCCATCAAGTTTCTTGAGAAACACTGGATC 839
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 767 GGCGCTGTCTTCGCCTCTGGATTCATCAGAGCCATCAAGTTTCTAGAGAAACACTGGA-C 825
Query 840 -GAGTTGGTCCGTGACATCAGAACCGGGACTCTAAGTTCCCTGATCACCGATCCTTCAGT 898
|||||||||||||||||||||||||| ||||| |||||||| || || |||||||| ||
Sbjct 826 AGAGTTGGTCCGTGACATCAGAACCGGTACTCTGAGTTCCCTCATAACTGATCCTTCCGT 885
Query 899 GCGTGAGGCGGTCGCCAAGATCCTTAAACCGAGCCCAAAGCTAGCTGA-TTTCGTGGAAT 957
|| ||||||||| |||||||||||||||||| ||||||| ||||| ||| |||||||
Sbjct 886 TCGCGAGGCGGTCTCCAAGATCCTTAAACCGAATTCAAAGCTCGCTGAGTTT-GTGGAAT 944
Query 958 TTGAGTGCAAGAAGTCGTCCTGGCAAGGGATTATTACTAGGCTGTGGCCTAACACAAAGT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TTGAGTGCAAGAAGTCGTCCTGGCAAGGGATTATTACTAGGCTGTGGCCTAACACAAAGT 1004
Query 1018 ATGTGGATGTGATTGTGACCGGGACAATGTCTCAATACATTCCAACTTTGGACTACTACA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 ATGTGGATGTGATTGTGACCGGGACAATGTCTCAATACATTCCAACTTTGGACTACTACA 1064
Query 1078 GTAATGGCTTGCCTCTTGTCTGCACAATGTATGCTTCCTCTGAGTGTTACTTTGGTGTGA 1137
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1065 GTAATGGCTTGCCTCTTGTCTGCACAATGTATGCTTCTTCCGAGTGTTACTTTGGTGTGA 1124
Query 1138 ATCTAAGGCCACTCTGCAAACCAAGCGAGGTCTCTTACACGCTCATACCATCCATGGCTT 1197
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1125 ATCTAAGGCCACTCTGCAAACCATGCGAGGTCTCATACACGCTCATACCATCCATGGCTT 1184
Query 1198 ATTTCGAGTTCTTGCCTGTTCATAGAAACAACGGTGTTACTAACTCCATCAACCTTCCTA 1257
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1185 ATTTCGAGTTCTTGCCTGTTCACAGAAACAACGGTGTTACTAACTCCATCAACCTTCCTA 1244
Query 1258 AAGCACTCACTGAGAAAGAGCAACAAGAGCTTGTTGATCTAGTTGATGTCAAGCTTGGTC 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AAGCACTCACTGAGAAAGAGCAACAAGAGCTTGTTGATCTAGTTGATGTCAAGCTTGGTC 1304
Query 1318 AGGAATACGAGCTTGTTGTCACCACTTACGCCGGGCTTTGCAGATACAGAGTTGGTGATT 1377
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1305 AGGAATACGAGCTTGTTGTCACCACTTACGCTGGGCTTTGCAGATACCGAGTTGGTGATT 1364
Query 1378 TATTGAGAGTGACTGGTTTCAAGAACAAAGCGCCTCAATTCAGTTTCATATGTCGCAAAA 1437
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1365 TATTGAGAGTGACTGGATTCAAGAACAAAGCGCCTCAATTCAGTTTCATATGTCGCAAGA 1424
Query 1438 ATGTGGTCTTGAGCATAGATTCCGACAAGACCGACGAGGTTGAGCTTCAGAACGCGGTGA 1497
|||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 1425 ATGTGGTCTTGAGCATAGATGCCGACAAGACCGATGAGGTTGAACTTCAGAACGCGGTGA 1484
Query 1498 AGAACGCAGTGACACACCTTGTCCCATTTGATGCCTCACTCTCTGAGTACACGAGCTATG 1557
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1485 AGAACGCAGTGACACACCTCGTCCCATTTCATGCCTCACTCTCTGAGTACACGAGCTATG 1544
Query 1558 CAGACACAAGTTCCATCCCAGGCCATTATGTCCTGTTTTGGGAGCTATGTTTGGATGGAA 1617
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1545 CAGACACAAGTTCTATCCCGGGCCATTATGTCCTGTTCTGGGAGCTATGTTTGGATGGAA 1604
Query 1618 ACACACCGATCCCTCCTTCGGTCTTCGAGGACTGCTGCTTAGCTGTAGAAGAGTCATTCA 1677
|||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| ||||
Sbjct 1605 ACACACCGATCCCTCCATCGGTCTTTGAGGATTGCTGCTTAACTGTAGAAGAGTCGTTCA 1664
Query 1678 ACACTGTTTATAGACAAGGAAGGGTTAGTGACAAGTCCATAGGCCCGCTTGAGATCAAGA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 ACACTGTTTATAGACAAGGAAGGGTTAGTGACAAGTCCATAGGCCCGCTTGAGATCAAGA 1724
Query 1738 TTGTTGAGCCAGGGACATTCGATAAGCTCATGGATTACGCAATCAGCTTGGGAGCATCGA 1797
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1725 TTGTTGAGCCAGGGACATTCGATAAGCTCATGGATTACGCGATCAGCTTGGGAGCATCGA 1784
Query 1798 TTAATCAGTATAAGACGCCGAGATGCGTGAAGTTTGCTCCAATTATCGAGCTATTGAACT 1857
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1785 TTAATCAGTATAAGACGCCGAGATGTGTGAAGTTTGCTCCAATCATCGAGCTATTGAACT 1844
Query 1858 CAAGGGTTGTTGATAGTTACTTCAGCCCCAAGTGTCCTAAATGGGTTCCTGGTCACAAAC 1917
| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1845 CGAGGGTTGTTAATAGTTACTTAAGCCCCAAGTGTCCTAAATGGGTCCCTGGTCACAAAC 1904
Query 1918 AGTGGGGGAGTAACTAAGATGGAATGTGGAACGTGAAGAGACTCTCTTTGAGCTAGAAGG 1977
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 AGTGGGGAAGTAACTAAGATGGAATGTGGAACGTGAAGAGACTCTCTTTGAGCTAGAAGG 1964
Query 1978 TTTGGGACTTGGACTTGCAAATGATGATGTCTTCTCTAATCTTAATTTTAGTTTAATCTT 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TTTGGGACTTGGACTTGCAAATGATGATGTCTTCTCTAATCTTAATTTTAGTTTAATCTT 2024
Query 2038 TTGTTCttttttttttGTTATCCTTTTAATATCCATAGTCCCTGTGGGTTTGAAAACCAG 2097
||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||| |||
Sbjct 2025 TTGTTCTTTTTTTTT-GTTATCCTTTTAATATGCATAGTCCCTCTGGATTTGAAAAGCAG 2083
Query 2098 TTGTACAAAAGGCAAATCATGTTTTCTCCAACCAACTCTCATCACTCTTTCTCGAGCCTC 2157
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2084 TTGTACAAAAGGCAAATCATGTTTTCTCCAACCAACTCTCATCACT-TT-CTCGAGCCTC 2141
Query 2158 CAAATTTTTCTATTGTTTAATGCGGAATTGTTTGGACTTTTATCATGTATAAGCAACGTG 2217
|||| ||||||||||||| |||| ||||||||||||||||||||| || |||||||||
Sbjct 2142 TAAATCTTTCTATTGTTTAGTGCGTAATTGTTTGGACTTTTATCATTTACAAGCAACGTC 2201
Query 2218 AAATTGCAATTTGCTAAGATGATTTT 2243
||||||||| |||||| |||||||||
Sbjct 2202 AAATTGCAAATTGCTAGGATGATTTT 2227
> Ahg950094 jgi|Araly1|950094|scaffold_801981.1
Length=1967
Score = 1836 bits (994), Expect = 0.0
Identities = 1616/1915 (84%), Gaps = 47/1915 (2%)
Strand=Plus/Plus
Query 90 TAAACCATGCCTGAGGCACCAAAGAAAGAATCTTTAGAGGTTTTC-GATCTGACG-CTTG 147
||||| ||||||||||||||||||| | | |||| |||| |||| ||| || | || |
Sbjct 19 TAAACGATGCCTGAGGCACCAAAGATCGTAGCTTTGGAGG-TTTCTGATGAGA-GCCTCG 76
Query 148 AC-CaaaaaaaCAAGCAA-AAGCTTCAGTTGATCGAAGAAC-TCACCTCTAACGCCGACC 204
| | || |||||| || || || || || ||||||| || | ||| | ||||| ||
Sbjct 77 -CGGAGAAGAACAAG-AACAAACTCCAATTCATCGAAG-ACGTGACCACGAACGCAGATG 133
Query 205 AAGTCCAAAGACAAG-TCTTGGAGGAGAT-CTTGACCCGCAATGCTGACGTGGAGTATCT 262
| || || |||| || |||| |||||||| ||| | || ||||||||||||||||||||
Sbjct 134 ATGTTCAGAGACGAGTTCTT-GAGGAGATCCTT-TCACGTAATGCTGACGTGGAGTATCT 191
Query 263 CAGGCGACACGACCTCAACGGTCGCACTGACCGTGAGACTTTCAAAAACATCATGCCCGT 322
|| ||||||| ||| | || || || |||||||||||||||||| | ||||||| ||
Sbjct 192 CAAACGACACGGGCTCGATGGACGAACCGACCGTGAGACTTTCAAACATGTCATGCCTGT 251
Query 323 TATCACCTACGAAGATATTGAGCCTGAGATCAACAGGATCGCTAATGGTGATAAATCACC 382
| || |||||||||||| | |||||||||||||| |||||||||||||||||||| ||
Sbjct 252 CGTAACTTACGAAGATATTCAACCTGAGATCAACAGAATCGCTAATGGTGATAAATC-CC 310
Query 383 -TATCCTCTCTTCCAAACCCATCTCTGAGTTCCTCACAAGCTCTGGGACATCTGGTGGGG 441
||||||| ||| || ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 311 AAATCCTCTGTTCTAACCCCATCTCTGAGTTCCTCACAAGTTCTGGGACTTCTGGTGGAG 370
Query 442 AGAGGAAGCTAATGCCAACAATCGAAGAGGAGCTAGACAGGAGATCACTCCTCTACAGTC 501
||||||| || ||||||||||| |||||||| |||||||| |||||||| ||||||||||
Sbjct 371 AGAGGAAACTGATGCCAACAATAGAAGAGGAACTAGACAGAAGATCACTTCTCTACAGTC 430
Query 502 TCTTGATGCCTGTGATGAGCCAGTTCGTTCCTGGTCTCGA-AAACGGCAAAGGAATGTA- 559
|||||||||||||||||| |||||| ||||||||||| || ||| ||||||||||||||
Sbjct 431 TCTTGATGCCTGTGATGAACCAGTTTGTTCCTGGTCTTGACAAA-GGCAAAGGAATGTAT 489
Query 560 TTTCTTGTTCATCAAGTCCGAATCCAAGACTCCAGGAGGCCTCCCTGCTCGTCCTGTCTT 619
|||| |||| ||||| |||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 490 TTTC-TGTTTATCAAATCCGAATCCAAGACACCAGGTGGTCTCCCTGCTCGTCCTGTTTT 548
Query 620 AACCAGTTACTACAAATCTTCCCATTTCAAAGAA-AGACCCTATGATCCTTACACCAACT 678
|||||||||||||||||| || || |||||| || ||||| | ||||||||||| ||||
Sbjct 549 AACCAGTTACTACAAATCCTCTCACTTCAAA-AACAGACCTTTTGATCCTTACAATAACT 607
Query 679 ACACAAG-CCCTAACGAGACCATCCTTTGCTCTGACTCTTACCAGAGCATGTACTCTCAG 737
||||||| ||| ||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 608 ACACAAGTCCC-AACCAAACCATCCTTTGTTCTGACTCTTACCAGAGCATGTACTCTCAA 666
Query 738 ATGCTTTGTGGCTTATGTCAACACCAGGAGGTTCTTAGAGTCGGCGCTGTCTTCGCCTCT 797
||||||||||| ||||| |||||| | ||||||||| | || || ||||| || ||||||
Sbjct 667 ATGCTTTGTGGTTTATGCCAACACAAAGAGGTTCTTCGTGTTGGTGCTGTTTTTGCCTCT 726
Query 798 GGATTCATCAGAGCCATCAAGTTTCTTGAGAAACACTGGATC-GAGTTGGTCCGTGACAT 856
|| ||||| ||||||||||| |||||||||||||| ||| || ||| | | |||||||||
Sbjct 727 GGTTTCATTAGAGCCATCAAATTTCTTGAGAAACATTGG-TCTGAGCTAGCCCGTGACAT 785
Query 857 CAGAACCGGGACTCTAAGTTCCCTGATCACCGATCCTTCAGTGCGTGAGGCGGTCGCCAA 916
|||||||| || || |||||| ||| ||||||| |||||| |||||||| |||| |
Sbjct 786 TAGAACCGGTACCCTCAGTTCCGAGATAACCGATCTTTCAGTTCGTGAGGCAGTCGGGGA 845
Query 917 GATCCTTAAACC-GAGCCCAAAGCTAGCTGATTTCGTGGAATTTGAGTGCAAGAAGTCGT 975
||| |||||||| || || ||||| ||||||||||| |||| || |||| |||| | |
Sbjct 846 GATTCTTAAACCGGA-TCCTAAGCTTGCTGATTTCGTCGAATCGGAATGCAGGAAGACCT 904
Query 976 CCTGGCAAGGGATTATTACTAGGCTGTGGCCTAACACAAAGTATGTGGATGTGATTGTGA 1035
| ||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 905 CTTGGCAAGGGATCATCACTAGGCTTTGGCCAAACACCAAGTATGTGGATGTGATTGTGA 964
Query 1036 CCGGGACAATGTCTCAATACATTCCAACTTTGGACTACTACAGTAATGGCTTGCCTCTTG 1095
|||| |||||||| || || ||||||||| |||| || || || ||||| ||||||||||
Sbjct 965 CCGGAACAATGTCACAGTATATTCCAACTCTGGATTATTATAGCAATGGTTTGCCTCTTG 1024
Query 1096 TCTGCACAATGTATGCTTCCTCTGAGTGTTACTTTGGTGTGAATCTAAGGCCACTCTGCA 1155
||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct 1025 TCTGCACAATGTATGCTTCTTCGGAGTGTTACTTTGGTGTGAATCTCAGGCCTCTCTGCA 1084
Query 1156 AACCAAGCGAGGTCTCTTACACGCTCATACC-ATCCATGGCTTATTTCGAGTTCTTGCCT 1214
||||||| || ||||||||||| |||||||| | |||||| ||||||||||||||||||
Sbjct 1085 AACCAAGTGAAGTCTCTTACACTCTCATACCGA-ACATGGCGTATTTCGAGTTCTTGCCT 1143
Query 1215 GTTCATAGAAACAACGGTGTTACTAACTCCATCAACCTTCCTAAAGCACTCACTGAGAAA 1274
|||||||| |||| || || |||| ||| |||| ||||| ||||||||||||||||||
Sbjct 1144 GTTCATAGGAACAGTGGAGTCACTAGCTCAATCAGTCTTCCGAAAGCACTCACTGAGAAA 1203
Query 1275 GAGCAACAAGAGCTTGTTGATCTAGTTGATGTCAAGCTTGGTCAGGAATACGAGCTTGTT 1334
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1204 GAACAACAAGAGCTTGTTGATCTCGTTGATGTCAAGCTTGGTCAGGAGTACGAGCTTGTT 1263
Query 1335 GTCACCACTTACGCCGGGCTTTGCAGATACAGAGTTGGTGATTTATTGAGAGTGACTGGT 1394
|||||||| || || || |||| ||| |||||||| |||||| | | || ||| |||||
Sbjct 1264 GTCACCACCTATGCTGGACTTTACAGGTACAGAGTGGGTGATGTCCTAAGCGTGGCTGGT 1323
Query 1395 TTCAAGAACAAAGCGCCTCAATTCAGTTTCATATGTCGCAAAAATG-TGGTCTTGAGCAT 1453
||||||||||| |||||||| ||||| |||||||| ||||| || | || || | |||||
Sbjct 1324 TTCAAGAACAATGCGCCTCAGTTCAGCTTCATATGCCGCAAGAACGTTGCTC-TAAGCAT 1382
Query 1454 AGATTCCGACAAGACCGACGAGGTTGAGCTTCAGAACGCGGTGAAGAACGCAGTGACACA 1513
|| || ||||| ||||| |||||||||||||| ||||| || || ||||| || |||||
Sbjct 1383 TGACTCAGACAAAACCGATGAGGTTGAGCTTCAAAACGCAGTTAAAAACGCGGTAACACA 1442
Query 1514 CCTTGTCCCATTTGATGCCTCACTCTCTGAGTACACGAGCTATGCAGACACAAGTTCCAT 1573
|||||| || || |||||||||||||| |||||||| |||||||| |||||| || ||
Sbjct 1443 CCTTGTTCCGTTCGATGCCTCACTCTCCGAGTACACTAGCTATGCGGACACATCATCTAT 1502
Query 1574 CCCAGGCCATTATGTCCTGTTTTGGGAGCTATGTTTGGATGGAAACACACCGATCCCTCC 1633
||||||||| |||||| |||| |||||||| || ||| |||| ||||| || || |||||
Sbjct 1503 CCCAGGCCACTATGTCTTGTTCTGGGAGCTCTGCTTGAATGGTAACACGCCAATTCCTCC 1562
Query 1634 TTCGGTCTTCGAGGACTGCTGCTTAGCTGTAGAAGAGTCA-TTCAACACTGTTTATAGAC 1692
|||||||||||||| ||||| ||| | ||||||| ||| || |||| ||| |||||||
Sbjct 1563 CTCGGTCTTCGAGGATTGCTGTTTAACCATAGAAGAATCACTT-AACAGTGTGTATAGAC 1621
Query 1693 AAGGAAGGGTTAGTGACAAGTCCATAGGCCCGCTT-GAGATCAAGATTGTTGAGCCAGGG 1751
|||||||||| |||||||||||||| || || || ||||||||||| || ||| |||||
Sbjct 1622 AAGGAAGGGTCAGTGACAAGTCCATTGGACC-ATTGGAGATCAAGATGGTCGAGTCAGGG 1680
Query 1752 ACATTCGATAAGCTCATGGATTACGCAATCAGCTTGGGAGCATCGATTAATCAGTATAAG 1811
|| |||||||||||||||||||| || || |||||||| |||||||| |||||||| |||
Sbjct 1681 ACTTTCGATAAGCTCATGGATTATGCGATAAGCTTGGGGGCATCGATCAATCAGTACAAG 1740
Query 1812 ACGCCGAGATGCGTGAAGTTTGCTCCAATTATCGAGCTATTGAACTCAAGGGTTGTTGAT 1871
|| || || || |||||||||||||| || || ||||| |||||||| ||||||||||||
Sbjct 1741 ACACCAAGGTGTGTGAAGTTTGCTCCGATCATTGAGCTTTTGAACTCTAGGGTTGTTGAT 1800
Query 1872 AGTTACTTCAGCCCCAAGTGTCCTAAATGGGTTCCTGGTCACAAACAGTGGGGGAGTAAC 1931
||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1801 AGTTACTTCAGCCCCAAGTGTCCTAAATGGGCCCCTGGTCACAAGCAATGGGGGAGTAAC 1860
Query 1932 TAA-GATGGAA--TGTG-G-AACGT-GAAGAGACTCTCTTTGA-GCTAGAAGGTT 1979
||| || |||| | || | || | || |||||||||| ||| | |||||||||
Sbjct 1861 TAAAGA-GGAAACTTTGAGGAA-GAAGA-GAGACTCTCTATGAAG-TAGAAGGTT 1911
> Ahg473020 jgi|Araly1|473020|fgenesh2_kg.1__2974__AT1G28130.1
Length=2165
Score = 82.4 bits (44), Expect = 1e-14
Identities = 164/220 (75%), Gaps = 16/220 (7%)
Strand=Plus/Plus
Query 1002 TGGCCTAACACAAAGTATGTGGATGTGATTGTGACCGGG-ACAATGTCTCAATACATTCC 1060
|||||||| | ||||| || || |||||||||| |||| | ||| |||||||||||||
Sbjct 1025 TGGCCTAAGGCTAAGTACGTTGAGGTGATTGTGA-CGGGTTCGATGGCTCAATACATTCC 1083
Query 1061 AACTTTGGACTACTACAG-TAATGGCTTGCCTCTT-GTCTGC-ACAATGTATGCTTCCTC 1117
|| | || | || || | || || || || || | | || ||||||||||||||
Sbjct 1084 CACACTCGAGTTTTATAGCGGA-GGTTTACC-ATTGGT-TTCAACGATGTATGCTTCCTC 1140
Query 1118 TGAGTGTTACTTTGGTGTGAATCT-AAGGCCACTCTGCAAACCAAGC-GAGGTCTCTTAC 1175
|||||||||||||||| | || || || || | || | ||| || || || || |||
Sbjct 1141 TGAGTGTTACTTTGGTATCAACCTCAAT-CCGTTGTGTGATCCA-GCCGATGTTTCCTAC 1198
Query 1176 ACGCT-CATACC-ATCCATGGCTTATTTCGAGTTCTTGCC 1213
||||| | | || | | |||||||| ||||||||||||||
Sbjct 1199 ACGCTTCTT-CCTAAC-ATGGCTTACTTCGAGTTCTTGCC 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84560343900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5