BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27270.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492071 jgi|Araly1|492071|fgenesh2_kg.7__1504__AT4G27270.1 1099 0.0
> Ahg492071 jgi|Araly1|492071|fgenesh2_kg.7__1504__AT4G27270.1
Length=697
Score = 1099 bits (595), Expect = 0.0
Identities = 663/697 (95%), Gaps = 0/697 (0%)
Strand=Plus/Plus
Query 10 AAAAATCAGAAAAGCTTTCAGAGGATCGAGCGCACTTCTTCAATGGCGACCAAAGTTTAC 69
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATCAGAAAAGCTTTGAGAGAATCGAGCGCACTTCTTCAATGGCGACCAAAGTTTAC 60
Query 70 ATAGTGTACTACTCAATGTATGGTCATGTGGAGAAATTAGCTCAAGAGATTAGGAAAGGT 129
|| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCGTGTACTACTCGATGTACGGCCATGTGGAGAAATTAGCTCAAGAGATTAGGAAAGGT 120
Query 130 GCTGCTTCTGTTGATGGTGTTGAAGCCATACTCTGGCAGGTACCCGAAACGCTCCAAGAA 189
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GCTGCTTCTGTTGATGGTGTTGAAGCCAAACTCTGGCAGGTACCCGAAACGCTCCAAGAA 180
Query 190 GATGTGCTCTCTAAAATGAGTGCACCACCAAAGAGTGATGCTCCTATTATCACCCCAAAC 249
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GATGTGCTCTCTAAAATGAGTGCACCGCCAAAGAGTGATGCTCCTATTATCACCCCAAAC 240
Query 250 GAGCTCGCTGAGGCTGATGGATTTATCTTCGGCTTCCCAACGAGGTTTGGTATGATGGCT 309
||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 241 GAGCTTGCTGAGGCTGATGGATTTGTCTTCGGCTTCCCAACAAGGTTTGGTATGATAGCT 300
Query 310 GCTCAGTTCAAGGCATTTTTAGATGCGACCGGCGGCCTTTGGAGGACTCAGCAACTCGCC 369
||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GCTCAGTTCAAAGCATTCTTGGATGCAACCGGCGGCCTTTGGAGGACTCAGCAACTCGCC 360
Query 370 GGTAAACCAGCCGGAATCTTCTACAGCACAGGGTCCCAAGGTGGTGGTCAAGAAACCACC 429
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GGTAAGCCAGCCGGGATCTTCTACAGCACAGGGTCCCAAGGTGGTGGTCAAGAAACAACC 420
Query 430 GCATTAACTGCCATTACTCAGCTGGTTCATCACGGGATGATCTTTGTCCCGATTGGCTAC 489
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 421 GCATTAACTGCCATTACTCAGCTGGTCCATCACGGGATGATATTTGTCCCGATTGGTTAC 480
Query 490 ACATTTGGTGCCGGAATGTTTGAGATGGAAAATGTGAAAGGTGGAAGCCCGTACGGGGCG 549
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 481 ACATTTGGTGCCGGAATGTTTGAGATGGAGAATGTGAAAGGTGGAAGCCCGTATGGGGCA 540
Query 550 GGAACATTTGCCGGAGATGGGTCGAGACAGCCAACGGAACTGGAGTTGGGGCAAGCATTT 609
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 541 GGAACGTTTGCCGGAGATGGGTCGAGACAGCCAACGGAACTGGAGCTGGAGCAAGCATTT 600
Query 610 CACCAAGGGAAGTACATTGCCGCCATAAGTAAGAAGCTCAAGGGACCTGCTGCTGCTTAG 669
||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||
Sbjct 601 CACCAAGGGAAGTACATAGCCGCCATAAGCAAGAAGCTCAAGGGACCTGCTGCTACTTAG 660
Query 670 AGCTCTCTCAATAAGATAATATTTTGATTCTTTGTTG 706
||||||||||| |||||||||||||||| | ||||||
Sbjct 661 AGCTCTCTCAAAAAGATAATATTTTGATGCCTTGTTG 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5