BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27280.1
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492070 jgi|Araly1|492070|fgenesh2_kg.7__1503__AT4G27280.1 769 0.0
Ahg495530 jgi|Araly1|495530|fgenesh2_kg.8__1346__AT5G54490.1 279 1e-74
> Ahg492070 jgi|Araly1|492070|fgenesh2_kg.7__1503__AT4G27280.1
Length=552
Score = 769 bits (416), Expect = 0.0
Identities = 521/568 (92%), Gaps = 21/568 (4%)
Strand=Plus/Plus
Query 18 aaaaaaaCAAACCTTCCTTAACCAGAACCAAATTTCAGATT-TTTAAACAACA---TAAG 73
||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| | |
Sbjct 1 AAACAAACAAACCTTCCTTAATCAGAACCCAATTTCAGATTATTTAAACAACATCGTCGG 60
Query 74 CTCTAATGGCGTCACCAAAGTCACCCACAAGACCAACCCAACAAAACCCACAACCCAATT 133
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTAATGGCGTCACCAAAGTCACCTACAAGACCAACCCAACAAAACCCACAACCCAATT 120
Query 134 TCCACGATTTTCTTCCTACCATGGCCGGAAACCTAGGCGGTGAAGGTCTGATCGGAGAGC 193
|||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TCCACGATTTCCTTCCCGCGATGGCCGGAAACCTAGGCGGTGAGGGTCTGATCGGAGAGC 180
Query 194 TATGCAACGGCTTCGAGCTTTTGATGGACAGAGAGAAAGGTGTCATCACGTTCGAGAGTC 253
| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTGTAACGGATTCGAGCTCTTGATGGACAGAGAGAAAGGTGTCATCACGTTCGAGAGTC 240
Query 254 TCCGACGTAACGCTGCGGCGGTTCTGGGTTTAGGAGATTTGACTGATGAAGATGTCCGGT 313
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 241 TCCGACGTAACGCAGCGGCGGTTCTGGGTCTCGGAGATTTGACTGATGAAGATGTCCGGT 300
Query 314 GTATGATTAAAGAAGGTGATTTTGACTGCGACGGTGCGTTGAATCAGATGGAGTTTTGTG 373
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 GTATGATTAAAGAAGGGGATTTTGACTGCGACGGTGCGTTGAACCAGATGGAGTTTTGTG 360
Query 374 TGTTGATGTTTAGGCTTAGCCCTGATTTGATGGAAGCGTCGCGGTGTCTCGTCACGGAGG 433
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TGTTGATGTTTAGGCTTAGCCCTGATTTGATGGAGGCGTCGCGGTGTCTCGTCACGGAGG 420
Query 434 TC-ATTGAGGAGGAGTTTGGCTTCACGCGCCGGCATTGACACTGGAGAGATTTGGGATCC 492
| |||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 421 -CGATTGAGGAGGAGTTCGGATTCACGCGCCGGCATTGACACCGGAGAGATTTGGGAG-- 477
Query 493 CTTCCTCTTTTATTTAATTCGATTCATTTGTTACCTTTTTCTTAATTTTTCCATTAATGT 552
||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 478 -----------ATTTAATTCGATTCATTTGTTACCTTTTTCTTA-TTTT-CCATTAATGT 524
Query 553 TACCATTCACATAATTCTTTTAATCATA 580
|||||||||||||||||||| |||||||
Sbjct 525 TACCATTCACATAATTCTTTGAATCATA 552
> Ahg495530 jgi|Araly1|495530|fgenesh2_kg.8__1346__AT5G54490.1
Length=451
Score = 279 bits (151), Expect = 1e-74
Identities = 311/386 (81%), Gaps = 20/386 (5%)
Strand=Plus/Plus
Query 75 TCTAATGGCGTCACC-AAAGTCACCC-ACAAGACCAACCCAACAAAACCCACAACCCAAT 132
|||||||||||| || ||| || ||| |||||||||| |||| |||| | | |||||||
Sbjct 34 TCTAATGGCGTCGCCTAAA-TC-CCCAACAAGACCAAACCAAGAAAATCAAGAACCCAAG 91
Query 133 TTCCACGATTTTCTT-CCTACCATGGCCGG-AAACCTAGGCGGTGAAGGTCTGATCGGAG 190
||||| || |||||| || || |||||||| ||| || || || |||||||| |||| ||
Sbjct 92 TTCCAAGA-TTTCTTCCCAACAATGGCCGGTAAA-CTCGGTGGAGAAGGTCTAATCGAAG 149
Query 191 AGCTATGCAACGGCTTCGAGCTT-TTGATGGACAGAGAGAAAGGTGTCATCACGTTCGAG 249
|||| || || || ||||||||| || ||||| | ||| ||||| |||||||| ||||||
Sbjct 150 AGCTTTGTAAAGGGTTCGAGCTTCTT-ATGGATAAAGACAAAGGAGTCATCACATTCGAG 208
Query 250 AGTC-TCCGACGTAACGC-TGCGGCGGTTC-TGGGTTTAGGAGATTTGACTGATGAAGAT 306
|| | | ||| | ||||| | || |||||| ||| || |||||| | || ||||| |||
Sbjct 209 AG-CTTACGAAGAAACGCAT-CGACGGTTCTTGGACTT-GGAGATCTAACGGATGACGAT 265
Query 307 GTCCGGTGTATGATTAAAGAAGGTGATTTTGACT-GCGACGGTGCGTTGAATCAGATGGA 365
|| || || ||||| || ||||| |||| ||| | | |||||||||||||||||||||||
Sbjct 266 GTTCGATGCATGATCAACGAAGGAGATTGTGA-TCGAGACGGTGCGTTGAATCAGATGGA 324
Query 366 GTTTTGTGTGTTGATGTTTAGGCTTAGCCCTGAT-TTGATGGAAGCGTCGCGGTGTCTCG 424
|||||||||| | |||||||| ||||| ||||| || ||||||||||| |||||| | |
Sbjct 325 GTTTTGTGTGCTCATGTTTAGACTTAGTCCTGAACTT-ATGGAAGCGTCACGGTGTGTTG 383
Query 425 TCACGGAGGTCATTGAGGAGGAGTTT 450
| |||||||| || |||| ||||||
Sbjct 384 TGACGGAGGTGATCAAGGAAGAGTTT 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24398666880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5