BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27310.1
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945327 jgi|Araly1|945327|scaffold_701556.1 523 1e-147
> Ahg945327 jgi|Araly1|945327|scaffold_701556.1
Length=617
Score = 523 bits (283), Expect = 1e-147
Identities = 343/370 (93%), Gaps = 11/370 (3%)
Strand=Plus/Plus
Query 195 AAGAGTTTGATTTTGATTAAAATGGGGAAGAAGTGTGATTTATGTAACGGTGTTGCAAGA 254
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAGAGTTCGA-TTTGATTAAAATGGGGAAGAAGTGTGATTTATGTAGCGGTGTTGCAAGA 59
Query 255 ATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGATTGCGACGGTAAAGTTCACGGC 314
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 ATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGACTGCGACGGTAAAGTTCACGGC 119
Query 315 GCTAATTTCTTGGTAGCTAAACACACGCGTTGTCTTCTCTGTAGCGCTTGTCAGTCTCTT 374
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 120 GCTAATTTCTTGGTCGCTAAGCACACGCGGTGTCTTCTCTGTAGCGCTTGTCAGTCTCTT 179
Query 375 ACGCCGTGGAAAGC-TACTGGG-CTTCGTCTTGGCCCAACTTTCTCCGTCTGCGAGTCAT 432
|||||||||||||| | | ||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 180 ACGCCGTGGAAAGCCT-C-GGGACTTCGCCTTGGCCCAACTTTCTCCGTCTGCGATTCAT 237
Query 433 GCGTCGCTCTTAAAAACGCCGGCGGTGGCCGTGGAAACAGAGTTTTATCGGAGAATCGTG 492
|||||||||||||||||||||||||||| ||||||| | |||| |||||||| ||| |
Sbjct 238 GCGTCGCTCTTAAAAACGCCGGCGGTGG---TGGAAACCGTGTTTCATCGGAGAGTCGAG 294
Query 493 GTCAGGAGGAGGTTAATAGTTTCGAGTCCGAAGAAGATCGGATTAGAGAAGATCA---CG 549
|||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||
Sbjct 295 GTCAGGAGGAGGTTAACAGTTTCGAGTCCGAAGAAGATCGGATCAGAGAAGATGATGGCG 354
Query 550 GTGACGGTGA 559
||||||||||
Sbjct 355 GTGACGGTGA 364
Score = 370 bits (200), Expect = 1e-101
Identities = 239/257 (93%), Gaps = 5/257 (2%)
Strand=Plus/Plus
Query 657 gaAGCGGAGAATCAAGTTGTGCCGTGGTCTGCGGCGGCGCAAGTTCCTCCGGTGATGAGT 716
||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 363 GAAGCTGAGAATCAAGTTGTTCCGTGGTCTGCGGCGGCGCAACCACCTCCGGTGATGAGT 422
Query 717 TCTTCATCTTCTGACGGAGGAAGCGGAGGTTCAGTGACGAAGAGGACGAGGGCTAGAGAG 776
||||||||||||||| | |||||||||||||| |||||||||||||||||| |||| |||
Sbjct 423 TCTTCATCTTCTGACTGTGGAAGCGGAGGTTCGGTGACGAAGAGGACGAGGACTAGGGAG 482
Query 777 AATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAG--C-TCTTCAGCTCAAGGGTCA 833
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 483 AATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAGCTCTTCTTCAGCTCAAGAGTCA 542
Query 834 AACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTTGTTTAACTCACA 893
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 543 AACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTGGTTTAACT-A-A 600
Query 894 CTCTACCGTATCGTCAG 910
||||| |||||||||||
Sbjct 601 CTCTATCGTATCGTCAG 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5