BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27320.1
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889422 jgi|Araly1|889422|Al_scaffold_0007_1408 1317 0.0
Ahg950087 jgi|Araly1|950087|scaffold_801974.1 640 0.0
> Ahg889422 jgi|Araly1|889422|Al_scaffold_0007_1408
Length=795
Score = 1317 bits (713), Expect = 0.0
Identities = 755/776 (97%), Gaps = 0/776 (0%)
Strand=Plus/Plus
Query 208 ATGAATCCAGATTCCGATTATCCTCATCTCCCTAACATCAAGATCCACCATCCTTCATCT 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCCAGATTCCGATTATCCTCATCTCCCTAACATCAAGATCCACCATCCTTCATCT 60
Query 268 CCTCGTCACTCTCACCACCACTCTTCCTCCACTCCTTCCGCCGCTACTCCTACCCCAACC 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCGTCACTCTCACCACCACTCTTCCTCCACTCCTTCCGCCGCTACTCCTACCCCAACC 120
Query 328 GCCGGTGCTCGCCGTAAGATCGGAGTCGCCGTTGACCTTTCCGAAGAAAGCGCTTTCGCT 387
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GCCGGTGCTCGCCGTAAGATCGGAGTCGCCGTTGACCTCTCCGAAGAAAGCGCTTTCGCT 180
Query 388 GTTCGCTGGGCTGTCGATCATTACATCCGTCCCGGAGACGCCGTCGTCATTCTCCACGTT 447
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 GTTCGCTGGGCTGTCGATCATTACATCCGTCCCGGTGACGCGGTCGTCATTCTCCACGTT 240
Query 448 TCTCCAACCTCCGTTCTCTTCGGCGCCGATTGGGGAcctctccctctccaaactcctcct 507
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TCTCCAACCTCCGTTCTCTTCGGCGCCGATTGGGGACCTCTCCCACTCCAAACTCCTCCT 300
Query 508 cctcctTCCGCCGCTACCGATCCCGGAGCTCAGCCGAAGCCTAGTCAGGAAGATTTCGAT 567
||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct 301 CCTCCTTCCGCCGCTACCGATCCCGAAGCTCAACCGAAACCTAGTCAGGAAGATTTCGAT 360
Query 568 GCGTTTACTTCTTCCAAAGTAGCGGATCTAGCGAAGCCGTTGAAGGAAGCTGGGTTTCCT 627
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 361 GCGTTTACTTCTTCCAAAGTAGCGGATCTAGCGAAGCCATTGAAGGAAGCTGGGTTCCCT 420
Query 628 CATAAGATCCATATAGTGAAAGATCACGATATGAGAGAGAGGCTTTGCTTAGAGACTGAA 687
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CATAAGATCCATATAGTGAAAGATCACGATATGAGAGAGAGGCTTTGTTTAGAGACTGAA 480
Query 688 AGGCTTAATCTAAGCGCCGTGATAATGGGAAGCAGAGGATTTGGTGCTGAGAAGAGAGGA 747
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGCTTAATCTAAGCGCTGTGATAATGGGAAGCAGAGGATTTGGTGCTGAGAAGAGAGGA 540
Query 748 AGTGATGGCAAGCTTGGCTCTGTTAGTGATTATTGTGTTCACCATTGTGTTTGTCCTGTT 807
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 AGTGATGGCAAGCTTGGCTCTGTTAGTGATTATTGTGTTCATCATTGTGTTTGTCCTGTT 600
Query 808 GTTGTTGTTAGATATCCTGATGATCGTGATGGTCCTGCTCCTCCTGGGAATGTTGGAGCT 867
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTGTGGTTAGATATCCTGATGATCGTGATGGTCCTGCTCCTCCTGGGAATGTTGGAGCT 660
Query 868 ACCAGGGAAGCTATTGTCACTGTTAAATCACGTAGGgatgatgacgatgatgatgatgaA 927
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 ACGAGGGAAGCTATTGTGACTGTTAAATCACGTAGGGATGATGATGATGATGATGATGAA 720
Query 928 GATCATGAGGCTAAGATTGCTGCTGCTGCTTCCGATCATCATGAACACATCAAAGA 983
||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 721 GATGATGAGGCTAAGATTCCTGCTGCTGCTTCTGTTCATCATGAACACATCAAAGA 776
> Ahg950087 jgi|Araly1|950087|scaffold_801974.1
Length=786
Score = 640 bits (346), Expect = 0.0
Identities = 558/657 (85%), Gaps = 27/657 (4%)
Strand=Plus/Plus
Query 205 ATCATGAATCCAGATTCCGATTATCCTCATC-TCCCTAACATCAAGATCCACCATCCTTC 263
||||||||||||||||||||| ||||||| | |||| |||||||||||||| || ||| |
Sbjct 18 ATCATGAATCCAGATTCCGATCATCCTCAGCTTCCC-AACATCAAGATCCATCACCCTCC 76
Query 264 ATCTCCTCGTCACTCT---CACCACCACTCTTCCTCCACT-CCT--TCCGCCGCTACTCC 317
|||||| ||||||||| ||||||||||| || |||||| ||| |||||||| |||||
Sbjct 77 ATCTCCACGTCACTCTCACCACCACCACTCCTCTTCCACTCCCTCCTCCGCCGCAACTCC 136
Query 318 TACCCCAACCGCCGGTGCTCGCCGTAAGATCGGAGTCGCCGTTGACCTTTCCGAAGAAAG 377
|| ||||| ||||| ||||| ||||| ||||||||||||||||| || || ||||||||
Sbjct 137 AACTCCAACTGCCGGAGCTCGTCGTAAAATCGGAGTCGCCGTTGATCTCTCTGAAGAAAG 196
Query 378 CGCTTTCGCTGTTCGCTGGGCTGTCGATCATTACATCCGTCCCGGAGACGCCGTCG-TCA 436
| | ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct 197 CTCCTTCGCCGTTCGTTGGGCTGTAGATCACTACATCCGTCCCGGAGACGCCGTTGTTC- 255
Query 437 TTCTCCACGTTTCTCCAACCTCCGTTCTCTTCGGCGCCGATTGGGGAcctctccctctcc 496
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 256 TTCTCCACGTTTCTCCAACTTCCGTCCTCTTCGGTGCCGATTGGGGACCTCTCCCTCTGA 315
Query 497 aaactcctcctcctcctTCCGCCGCTACCGATCCCGGA-GCTCAGCCGAAGCCTAGTCAG 555
|||||| ||| | | | | | | ||| || | ||||| | ||||||||||
Sbjct 316 AAACTCAACCT--T-C-T--G-TG-GA-AGAT-CCAAACGCTCAATCTCAGCCTAGTCAA 365
Query 556 GAAGATTTCGATGCGTTTACTTCTTCCAAAGTAGCGGATCTAGCGAAGCCGTTGAAGGAA 615
|||||||| ||||| |||||||| | ||||| ||||||||||| |||||||||||||||
Sbjct 366 GAAGATTTTGATGCTTTTACTTCAACAAAAGTTGCGGATCTAGCTAAGCCGTTGAAGGAA 425
Query 616 GCT-GGGTTTCCTCATAAGATCCATATAGTGAAAGATCACGATATGAGAGAGAGGCTT-T 673
| ||||||||| ||||||||||||||||||||||||| |||||||| |||| | || |
Sbjct 426 -TTAGGGTTTCCTTATAAGATCCATATAGTGAAAGATCATGATATGAGGGAGA-GATTAT 483
Query 674 G-CTTAGAGACTGAAAGGCTTAATCTAAGCGCCGTGATAATGGGAAGCAGAGGATTTGGT 732
| ||| |||| ||| |||||| ||| || || ||||| |||||||| ||||| ||||||
Sbjct 484 GTCTT-GAGATTGAGAGGCTTGGTCTTAGTGCTGTGATTATGGGAAGTAGAGGTTTTGGT 542
Query 733 GCTGAGAAGAGAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTATTGTGTTCACCAT 792
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 543 GCTGAGAAAAGAGGAAGTGATGGCAAGCTTGGCTCTGTTAGTGATTACTGTGTTCATCAC 602
Query 793 TGTGTTTGTCCTGTTGTTGTTGTTAGATATCCTGATGATCGTGATGGTCCTGCTCCT 849
||||||||||| |||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct 603 TGTGTTTGTCCCGTTGTTGTGGTTAGATATCCTGATGATCGTGATGGACCTGTTCCT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48606719175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5