BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27330.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492066 jgi|Araly1|492066|fgenesh2_kg.7__1499__AT4G27330.1 1849 0.0
> Ahg492066 jgi|Araly1|492066|fgenesh2_kg.7__1499__AT4G27330.1
Length=1263
Score = 1849 bits (1001), Expect = 0.0
Identities = 1205/1294 (93%), Gaps = 52/1294 (4%)
Strand=Plus/Plus
Query 1 CACACTTAAAGCTTTCGTCTTTACCTCTTC-C--CT-TCTCTCTCTCTATCTAAAAAGAG 56
|||||||||||||||||||||||||||||| | || ||||||||||| |||||||||||
Sbjct 1 CACACTTAAAGCTTTCGTCTTTACCTCTTCACTTCTCTCTCTCTCTCTCTCTAAAAAGAG 60
Query 57 TTCCGAGAAGAAG---ATCATC-ATCAATGGCGACTTCTCTCTTCTTCATGTCAACAGAT 112
||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTCCGAGAACAAGATCATCATCAATCAATGGCGACTTCTCTCTTCTTCATGGCAACAGAT 120
Query 113 CAAAACTCCGTCGGAAACCCAAACGATCTTCTGAGAAACACCCGTCTTGTCGTCAACAGC 172
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAAACTCCGTTGGAAACCCAAATGATCTTCTGAGAAACACCCGTCTTGTCGTCAACAGC 180
Query 173 TCCGGCGAGATCCGGACAGAGACAC-TGAAGAGTCGTGGTCGGAAACCAGGATCGAAGAC 231
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 181 TCCGGCGAGATCCGGACAGAGACACAT-AAGAGTCGTGGTCGGAAACCAGGATCGAAGAC 239
Query 232 AGGTCAGCAAAAACAGAAGAAACCAACGTTGAGAGGAATGGGTGTAGCAAAGCTCGAGCG 291
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 240 AGGTCAGCAAAAGCAGAAGAAACCGACGCTGAGAGGAATGGGTGTAGCAAAGCTCGAGCG 299
Query 292 TCAGAGAATCGAAGAAGAAAAGAAGCAACTCGCCGCCGCCACAGTCGGAGACACGTCATC 351
||| |||||||||||||||||||||||| | |||||||||||||||||| ||| ||
Sbjct 300 TCAAAGAATCGAAGAAGAAAAGAAGCAAAT---CGCCGCCACAGTCGGAGAGACG---TC 353
Query 352 AGTAGCATCGATCTCTAACAACGCTACCCGTTTACCCGTACCGGTAGACCCGGGTGTTGT 411
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 354 AGCAGCTTCGATCTCTAACAACGCTACCCGTTTACCCGTACCCGTAGACCCGGGTGTTGT 413
Query 412 GCTACAAGGCTTCCCAAGCTCACTC----G--G--G-AGCAACAGGATCTATTGTGGTGG 462
||||||||||||||||||| ||||| | | | |||||||||||||||||||||||
Sbjct 414 GCTACAAGGCTTCCCAAGCCCACTCGGAGGATGCAGAAGCAACAGGATCTATTGTGGTGG 473
Query 463 AGTCGGGTCGGGTCAGGTTATGATCGACCCGGTTAT-TTCTCCATGGGGTTTTGTTGAGA 521
|||||||||||||||| | ||||||||||| ||| | |||||||||||||||||||||||
Sbjct 474 AGTCGGGTCGGGTCAGATGATGATCGACCCTGTT-TGTTCTCCATGGGGTTTTGTTGAGA 532
Query 522 CCTCCTCCACTACTCATGAGCTCTCTTCAATCTCAAATCCTCAAATGTTTAACGCTTCTT 581
||||| | | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 533 GCTCCT-C-C-ACTCATGAGCTCTCTTCAATCTCAAATCCTCAAATGTATAACGCTTCTT 589
Query 582 CCAATAATCGCTGTGACACTTGCTTCAAGAAGAAACGTTTGGATGGTGATCAGAATAATG 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CCAATAATCGCTGTGACACTTGCTTCAAGAAGAAACGTTTGGATGGTGATCAGAATAATG 649
Query 642 TAGTTCGATCCAACGGTGGTGGATTTTCGAAATACACAATGATTCCTCCTCCGATGAACG 701
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 650 TAGTTCGATCCAACGGTGGTGGGTTTTCGAAATACACAATGATTCCTCCTCCGATGAACG 709
Query 702 GCTACGATCAGTATCTTCTTCAATCAGATCATCATCAGAGGAGCCAAGGTTTCCTTTATG 761
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 710 GCTACGATCAATATCTTCTTCAACCAGATCATCATCAGAGGAGCCAAGGTTTCCTTTATG 769
Query 762 ATCATAGAATCGCTAGAGCAGCTTCAGTTTCTGCTTCTAGTACTACTATTAATCCTTATT 821
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATCATAGAATCGCTAGATCAGCTTCAGTTTCTGCTTCTAGTACTACTATTAATCCTTATT 829
Query 822 TCAACGAGGCAACAAATCATACGGGACCAATGGAGGAATTTGGGAGCTACATGGAAGGAA 881
| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 830 TTAATGAGGCGACAAATCATACGGTACCAATGGAGGAATTTGGGAGCTACATGGAAGGAA 889
Query 882 ACCCTAGAAATGGATCAGGAGGTGTGAAGGAGTACGAGTTTTTTCCGGGGAAATATGGTG 941
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 890 ACCCTAGAAATGGATCAGGAGGTGTGAAGGAGTACGAGTTTTTTCCGGGAAAATATGGTG 949
Query 942 AAAGAGTTTCAGTGGTGGCTAAAACGTCGTCACTCGTAGGTGATTGCAGTCCTAATACCA 1001
||||||||||||||||||||| | |||| ||| || ||||||||||||||||||||||||
Sbjct 950 AAAGAGTTTCAGTGGTGGCTACATCGTCATCAGTCATAGGTGATTGCAGTCCTAATACCA 1009
Query 1002 TTGATTTGTCCTTGAAGCTTTAAATGTTTTATCTTTCTATATTGATTT-AAACaaaatcg 1060
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 1010 TTGATTTGTCCTTGAAGCTTTAAATGTTTTATCTTTCTATATTTATTTTAAACAAA-TCG 1068
Query 1061 tctctttaaagaaaaaacattttaagtagatgaaagtaagaaacagaagaaaaaaaaGAG 1120
||| ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1069 TCT-TTT------------TTT-AAGTAGATGAAAGTAAGAAACAGAAGAAAAAAAAGAC 1114
Query 1121 AGAGCCTTTTTTGGTGTATGCATCTGAGAGCTG-AGTCGAAAGAAAGATTCAGCTTTTGG 1179
||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1115 ----CCTTTTTTGGTGTATGCATCTGAGAGCTGGA-TCAAAAGAAAGATTCAGCTTTTGG 1169
Query 1180 ATTACCCTTTTGGTTGTTTATTATGAGATTCTAACCTAAACACTCAGACATATATGTTCT 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 ATTACCCTTTTGGTTGTTTATTATGAGATTCTAACCTAAACACTCAGACATATATGTTCT 1229
Query 1240 GTTCTCTTCCTTAATTGTTGTCATGAAACTTCTC 1273
||||||||||||||||||||||||||||||||||
Sbjct 1230 GTTCTCTTCCTTAATTGTTGTCATGAAACTTCTC 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5