BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27340.1
Length=2129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492065 jgi|Araly1|492065|fgenesh2_kg.7__1498__AT4G27340.1 3206 0.0
> Ahg492065 jgi|Araly1|492065|fgenesh2_kg.7__1498__AT4G27340.1
Length=2101
Score = 3206 bits (1736), Expect = 0.0
Identities = 2001/2124 (94%), Gaps = 38/2124 (2%)
Strand=Plus/Plus
Query 11 TAATACCTTTGATGCACAAACGCGGGAAATGACCTTCATTGTCCCAACACCAAAACCCAA 70
||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 1 TAAAACCTTTGATGCACAAACGCGGGAAATGACCTTCACTGTCTCAACACCAAAATCCAA 60
Query 71 ATCCATCAGGAAGCTGAGTGAATCAGAAAATGGTGTCAAAGCTTTCTCTTTTCCGAGCCA 130
||||| || ||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ATCCAACAAGAAGC--------TCAGAAAATGGTGTCAAAGCTATCTCTTTTCCGAGCCA 112
Query 131 ATTCACTTCCTTTTCCAGTCATCTCTTCCTACTCTGCTCGTTTTATCCTTAAACCCTATC 190
||||||||||||| || ||| ||||||||||||| |||| |||||||| |||||||||||
Sbjct 113 ATTCACTTCCTTTCCCTGTCTTCTCTTCCTACTCAGCTCTTTTTATCCATAAACCCTATC 172
Query 191 CCAAACCTAAAACCCTTATCTTCTGTGTCTTCTCCAGTAATCTCTCCTCCACCACCTTTC 250
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 173 CCAAACCTAAAACCCTTATCTTCTGCGTCTTCTCCAGTAATCTCTCCTCCACCACCGTTC 232
Query 251 CGTATGGCCCGTCTCTTCTGAAAGGAAAGAAGCCTGTGCTAGATGATATTAGATTAGCTT 310
| ||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||| ||||
Sbjct 233 CCTATGGCCCGTCTCTTCTAAAAGGGAAGAAGCCTTTGCTAGATGATCTTAGATTGGCTT 292
Query 311 CAATTGGTCGAGACAGAGATGCCCATCGAGGCAAAATTGGAGAGTTT-GATGAATCAATT 369
||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||||
Sbjct 293 CAATTGGTCGAGACAGAGATGCCCATCGAAGCAAAATTGGAGA-TTTGGAAGAATCAATT 351
Query 370 GAGAAA-GATGTTCTTTTGAATGAAGATGAATTTACTAGGGTTTTTGAGATTTCGGCGAT 428
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 352 GAGAAATG-TGTTCTTTTGAATGAAGATGAATTTACTAGGGTTTTCGAGATTTCGGCGAT 410
Query 429 TCGAGTCCCGGCGAAGGATTGTTTCGCGCTCGAGAATCGTCTCCGTGGTCATCTTCTTAA 488
||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 411 TCGGGTCCCGGCGAAGGACTGTTTCGCACTTGAGAATCGTCTCCGTGGTCATCTTCTTAA 470
Query 489 TTGGCCTAGGATTCGGAACATTGCTAGGGTTCCTGGAGATGagattgaagaagatgtggt 548
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 471 TTGGCCTAGGATTCGGAACATTGCTAGGGTTCCTGGAGATGAAATTGAAGAAGATGTGGT 530
Query 549 gaagctgttgggccgtgagactgatgaagaagaagaagatgaagaTAGTGTTGTGGATTC 608
| ||||||||||||||||||| |||||| |||| | | ||||||||| ||||||||||
Sbjct 531 GCAGCTGTTGGGCCGTGAGAC---TGAAGATGAAG-A-A-GAAGATAGTATTGTGGATTC 584
Query 609 GGTTAACCGGAGAATAAGAGGGAAAGCAGAAGGGGATGGGGAGAGATTGAGTTCAGTGTT 668
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GGTTGATCGGAGAATAAGAGGGAAAGCAGAAGGGGATGGGGAGAGATTGAGTTCAGTGTT 644
Query 669 GCATAGAGATAAACTCGCCAGGACATTTAATTCAACTGGGTATCTCAAATTCAGAAACTT 728
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 645 GCATAGAGATAAACTCGCAAGGACATTTAATTCAACTGGCTATCTCAAATTCAGAAACTT 704
Query 729 GGCCAAGATTTCTCGGCCaaagaggaagaggaagacagagagaa-caagggaggggaagg 787
||||||||||||||||||||||||||||||||||||||||| || ||| || | ||||||
Sbjct 705 GGCCAAGATTTCTCGGCCAAAGAGGAAGAGGAAGACAGAGA-AAGCAACGGTGAGGAAGG 763
Query 788 aaaagg-aaaTAGCAAGCAGACGCAACGAAATGGCGGTGGTGGAAGTGGTGGAA-ACTCG 845
|||||| |||| | |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 764 AAAAGGAAAAT-GGAAGCAGACGCAACGAAATGGCGGTGGTGGAAGTGGTGGAAGA-TGG 821
Query 846 AGGAGGAGAAGAGGATTTTGAGGGGTTA-TTGGGAGAAGGCTATGGTAGTAGAGGAAGAT 904
|||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 822 AGGAGGAGCTGAGGATTTTGAGGGGTTACTT-GGAGAAGGCTATGGTAGTAGAGGAAGAT 880
Query 905 GGAGAGGTTCAACAAGATTGTTGCTTTTGGATGAGAAATATTCCGGTGAGGAAGTTCAAG 964
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 881 GGAGAGGTTCAACAAGATTGTTGCTTTTGGATGAGAAATATTCCGGAGAGCAAGTTCAAG 940
Query 965 ACTTGCCTGAGGCTATCAAGGTTCTGTTTGCAGAAGCTAAAATGGCTGATGCA-AGCTTA 1023
|||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||
Sbjct 941 ACTTGCCTGAGGCTATCAAGGTTCTGTTTGCAGAAGCTAAAATGACCGATG-AGAGCTTA 999
Query 1024 AGTTTCGAGCTAGTGAAATGCAGACTGACTTTGTTCTATGACTATTGGCCAATGATTGAG 1083
| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1000 ATTTTTGAGCTAGTGAAATGCAGAGTGACTTTGTTCTATGACTATTGGCCAATGATTGAG 1059
Query 1084 ATATTGGAGGCTGTACTACCTAAGGGTATGA-TTGTGCCTTCGGCATTTGAGATGGTGGG 1142
||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||
Sbjct 1060 ATATTGGAGGCTGTACTACCTAAGGGTAT-AGTTGTACCTTCAGCATTTGAGATGGTGGG 1118
Query 1143 GCATATTGCGCATCTGAACCTAAGAGATGAGCATCTACCATACAAAAGGCTCATAGCTAA 1202
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1119 GCATATTGCGCACCTGAATCTAAGAGATGAGCATCTACCATACAAAAGGCTCATCGCTAA 1178
Query 1203 GGTAGTCCTGGACAAGAATCAGCCAAAGATACAAACCGTTGTGAATAAGATTGATCCTAT 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GGTAGTCCTGGACAAGAATCAGCCAAAGATACAAACCGTTGTGAATAAGATTGATCCTAT 1238
Query 1263 CCACAATGACTTCAGAACTATGCAGCTAGAGGTTTTAGCTGGAAACCATTCGCTGGTGAC 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 CCACAATGACTTCAGAACTATGCAGCTAGAGGTTTTAGCTGGAAACCATTCGCTGGTGAC 1298
Query 1323 TCTAGTTGTTGAAAATGGACTGCGCTTTCATGTTGATTTAGCTAGAGTATATTGGAATTC 1382
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1299 TCTGGTTGTTGAAAATGGACTGCGCTTTCATGTTGATCTAGCTAGAGTATATTGGAATTC 1358
Query 1383 GAAACTTGGGACAGAAAGACAGAGGCTGCTACTCGGGTTCGACCAAAATGACGTTGTCTG 1442
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 TAAACTTGGGACAGAAAGACAGAGGCTGCTACTCGGGTTCGACCAAAATGACGTTGTCTG 1418
Query 1443 TGATGTTTTTGCTGGAGTTGGTCCTATCGCACTTGCTGCAGCAAGAATTGTAAAACGTGT 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 TGATGTTTTTGCTGGAGTTGGTCCTATCGCACTTGCTGCAGCAAGAATTGTAAAACGTGT 1478
Query 1503 ATATGCCAATGACCTGAATCCTCATGCAGTAGAATTTATGGAACAGAATAGTGTTGTCAA 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 ATATGCCAATGACCTGAATCCTCATGCAGTAGAATTTATGGAACAGAATAGTGTTGTCAA 1538
Query 1563 TAAGCTCGAGAAGAGAATTGAGATCTTTAACATGGACGGACGAAGATTCATAAAGGCTAT 1622
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 TAAGCTCGAGAAGAGAATCGAGATCTTTAACATGGACGGACGAAGATTCATAAAGGCTAT 1598
Query 1623 GTTTTCAAGCGAAAAAGGTCAAAAAGTCACCCAAGTAGTCATGAATTTACCAAAAGATGC 1682
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1599 GTTTTCAAGCGAAAAAGGTCGGAAAGTCACCCAAGTAGTCATGAATTTACCAAAAGATGC 1658
Query 1683 TGCTGAATCTCTAGATGCATTTCGCGGAGTATACAACGATAGGCAC-AGAGATGAAGGCT 1741
|||||||||||||||||||||||||||||||||| |||||| | | |||||||||||||
Sbjct 1659 CGCTGAATCTCTAGATGCATTTCGCGGAGTATACAGCGATAGAC-CGAGAGATGAAGGCT 1717
Query 1742 TATCTTTCCCAACCATCCATGTGTATGGATTCTCCAAGGCTTCTGATCCAGAATTCGACT 1801
|||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 1718 TATCATTCCCAACCATCCATGTTTATGGATTCTCCAAGGCTCCTGATCCAGAATTTGACT 1777
Query 1802 TCCACGAGCGGATACGGATTGCTTTATCTGAGGTAGCCGTGGATGTGAAGATGCGAAAGG 1861
||||||||||||| ||||||||| ||||||| || |||||||| ||||||||||||||||
Sbjct 1778 TCCACGAGCGGATTCGGATTGCTCTATCTGAAGTGGCCGTGGACGTGAAGATGCGAAAGG 1837
Query 1862 TACGCCTTGTGGCTCCAGGGAAATGGATGCTATGTGCTTCATTCATACTTCCCAAGAATG 1921
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1838 TACGCCTTGTGGCTCCTGGAAAATGGATGCTTTGTGCTTCATTCATACTTCCCAAGAGTG 1897
Query 1922 TAGCCTTCTCAAGAAAAAACTTAAGTTATGTAGATTAATAGAATGCAATACATGGCTGAA 1981
|||| |||||||| |||||| ||||||||||||||||| |||| |||||| ||||| |||
Sbjct 1898 TAGCTTTCTCAAGGAAAAACCTAAGTTATGTAGATTAAAAGAAGGCAATATATGGCAGAA 1957
Query 1982 TATAGGGGCATATTTGCAAATACGAAATATTTTATTGTACTGC-A--GC--C-AGTAATA 2035
||||||||||||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct 1958 TATAGGGGCATATTTGCAAATACGAAATATTTTATTGTACTGCTACTGCAGCCAGTAATA 2017
Query 2036 CTTGCAGTGTCTTTGTTGAAGAACAAGACAACTAACAAGTGAAAGTGACAATAGCTTTTG 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 CTTGCAGTGTCTTTGTTGAAGAACAAGACAACTAACAAGTGAAAGTGACAATAGCTTTTG 2077
Query 2096 TTACATTATTTAATATTGAAAAAA 2119
||||||||||||||||| ||||||
Sbjct 2078 TTACATTATTTAATATTCAAAAAA 2101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80103785235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5