BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27350.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492064 jgi|Araly1|492064|fgenesh2_kg.7__1497__AT4G27350.1 1653 0.0
Ahg915106 jgi|Araly1|915106|Al_scaffold_0009_75 444 8e-124
Ahg922061 jgi|Araly1|922061|scaffold_103342.1 353 1e-96
> Ahg492064 jgi|Araly1|492064|fgenesh2_kg.7__1497__AT4G27350.1
Length=1136
Score = 1653 bits (895), Expect = 0.0
Identities = 1086/1171 (93%), Gaps = 41/1171 (4%)
Strand=Plus/Plus
Query 6 GCCGCTCGACGTG-T--T-AATCTTCTTCCT-CCTGAAGATCTCTCTCTGAAAGACATTC 60
||||||||||||| | | |||||||||||| |||||||| ||||||||||||||||
Sbjct 1 GCCGCTCGACGTGTTAATCAATCTTCTTCCTGCCTGAAGA----TCTCTGAAAGACATTC 56
Query 61 TCAAATTTTCTCGGGAAAACACCTTTTTCTGATTCGTTTTTCTCCAGATCATTCCTTCTT 120
||||||||||||||||||||| |||| | |||||||||| |||||||||| |||||||||
Sbjct 57 TCAAATTTTCTCGGGAAAACATCTTTCT-TGATTCGTTTATCTCCAGATCTTTCCTTCTT 115
Query 121 TCTTATATCCGATTTCTTCGGGAGGAGGCGAAGAGACGGTCAACAATTTTATCCAATGTC 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 116 TCTTATATCCGATTTCTTCGGGAGGAGGCGAAGAGACGGTC-ACAATTTTATCCAATGGC 174
Query 181 GCGCCGTCTTTTCGCCTGTTTCGGCCTCAAGAAATCTTCAACTAAACCTATCTCTGGTGG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 175 GCGCCGTCTTTTCGCCTGTTTCGGCCTCAAGAAATCTTCAACTAAACCTATCTCCGGAGG 234
Query 241 TAACAATTCCGCCGCCGTAGCCGCAGAAATTCCCGCCGGAGATGGTCCCGTTCTCGTCCA 300
|||||||||||||||||| ||||||| |||||||||||||| || || |||||||||||
Sbjct 235 TAACAATTCCGCCGCCGTCTCCGCAGATATTCCCGCCGGAGACGGACCTGTTCTCGTCCA 294
Query 301 GCTATTCTCGTCTCAGGGATGTAAAACATCGCCCGCGGCGGAGATGTTGATGTCCCGGCT 360
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 295 GCTATTCTCGTCGCAAGGATGTAAAACATCGCCGGCGGCGGAGATGTTGATGTCCCGGCT 354
Query 361 AGGTCGAGGTGATTTCGACGCTCAGATCCGTGGCGAAGATGGTGGATCTGGATCTCCGAC 420
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 355 AGGTCGAGGTGATTTCGACGCCCAGATCCGTGGAGAAGATGGTGGATCTGGATCTCCGGC 414
Query 421 GATGGTTTTGGTGTTTCATGTGGATTATTGGGATTACAAGGGGTGGAAAGATCCGTATGG 480
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 415 GATGGTTTTGGTGTTCCATGTGGATTATTGGGATTACAAAGGGTGGAAAGATCCGTATGG 474
Query 481 ATCGAGCCAATGGACGGTGAGGCAGAAGGCGTATATAGAGGCGTTGAATCTGGATACGAT 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 475 ATCGAGCCAATGGACGGTGAGGCAGAAGGCGTATGTAGAGGCGTTGAATCTGGATACGAT 534
Query 541 GTTTACTCCGCAGCTTGTGA-TCCAAGGTCGTTCTCAATTGATCGGAAACGAAGAGGAGA 599
|||||||||||||||||| | | ||||| ||||||||||||||||||||||| || ||||
Sbjct 535 GTTTACTCCGCAGCTTGT-AGTTCAAGGCCGTTCTCAATTGATCGGAAACGAGGAAGAGA 593
Query 600 CGCTGCTCAAATCTATCTCCGAAGCGCCTAGGTTTCCTTCTCCAGCCTTCCGGGCGACTT 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 594 CGCTGCTCAAATCTATCTCCGAAGCGCCTAGGTTTCCTTCTCCAGCTTTCCGGGCGACTT 653
Query 660 TCCAGAGACCAACCTCAGAGACACTGCAAGTATCACTCACCGGAGCTTTGAGAATGAAAG 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 654 TCCAGAGACCAACCTCAGAGACACTGCAAGTATCACTCACCGGAGCCTTGAGAATGAAAG 713
Query 720 TAGACGGAGACGGAATGGACATAATGGTGGCAATATACGAAACCGGGCTTGTGAACGACT 779
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 714 TAGACGGAAACGGAATGGACATAATGGTGGCGATATACGAAACCGGGCTTGTGAACGACT 773
Query 780 GTGCAAGAGGAGAGAACGAAGGAAGAATGTTGTCGAATGATTACGTTGTAAGAAAGATGG 839
| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 774 GCGCGAGAGGAGAGAACGAAGGAAGAATGTTGTCGAATGACTACGTTGTCAGAAAGATGG 833
Query 840 AAAAGATGTGCACTGTGAAAGATGTAGCACCGAAGAAGCCAGTCTCGGGGACTGCTCATT 899
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 834 AAAAGATGTGCACTGTGAAAGATGTAACACCGAAGAAACCAGTCTCGGGGACTGCTCATT 893
Query 900 TTACGCTCTGGGATGGATTCAACAGCAGCAAATGTGGAGTCGCCGTCTTTCTTCAGAACT 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 894 TTACGCTCTGGGATGGATTCAACAGCAGCAAATGTGGAGTCGCCGTCTTTCTTCAGAATT 953
Query 960 CTTCTCTTCAGATTTTTGGTACACAGAGTTTTAAATTACCTGATGAGATTTGAGTTAATT 1019
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 954 CGTCTCTTCAGATTTTTGGTACACAGAGTTTTAAGTTACCTGATGAGATTTGAGTTGATT 1013
Query 1020 TCCCTAATATCTGAAAAATAAAGAAAAGAAAACCGATCTTTGTATCGTCCATATTTTGCT 1079
|| | | ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1014 -----AA-A----A----TAAAGAAAAGAAAAC-GATCGTTGTATCGTCCATATTTTGCT 1058
Query 1080 TGTGATAATCATTCGGGTTCCACTCTGCTTTTGTACAGTTATAAATGTGTGACTACTTAT 1139
|||||||||||| ||| |||||||||||||| |||||||||| |||||||| |||||
Sbjct 1059 TGTGATAATCATCCGGTTTCCACTCTGCTTT-GTACAGTTAT----GTGTGACTGCTTAT 1113
Query 1140 AACTTAATAGGGTTTAAGGTTTCTTCTAATT 1170
| ||||||||||||||||||||||
Sbjct 1114 A--------GGGTTTAAGGTTTCTTCTAATT 1136
> Ahg915106 jgi|Araly1|915106|Al_scaffold_0009_75
Length=324
Score = 444 bits (240), Expect = 8e-124
Identities = 277/294 (94%), Gaps = 5/294 (2%)
Strand=Plus/Plus
Query 468 AAGATCCGTATGGATCGAGCCAATGGACGGTGAGGCAGAAGGCGTATATAGAGGCGTTGA 527
|||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 18 AAGA-CCGTATGGATCGAGCCAATGGACGGTGAGGCAAAAGGCGTATGTAGAGGCGTTGA 76
Query 528 ATCTGGATACGATGTTTACTCCGCAGCTTGTGA-TCCAAGGTC-GTTCTCAATTGATCGG 585
||||||||||||||||||||||||||||||| | | ||||| | ||||||||||||||||
Sbjct 77 ATCTGGATACGATGTTTACTCCGCAGCTTGT-AGTTCAAGG-CTGTTCTCAATTGATCGG 134
Query 586 AAACGAAGAGGAGACGCTGCTCAAATCTATCTCCGAAGCGCCTAGGTTTCCTTCTCCAGC 645
|||||| || ||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 135 AAACGAGGAAGAGACGCTGTTAAAATCAATCTCCGAAGCGCCTAGGTTTCCTTCTCCAGC 194
Query 646 CTTCCGGGCGACTTTCCAGAGACCAACCTCAGAGACACTGCAAGTATCACTCACCGGAGC 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TTTCCGGGCGACTTTCCAGAGACCAACCTCAGAGACACTGCAAGTATCACTCACCGGAGC 254
Query 706 TTTGAGAATGAAAGTAGACGGAGACGGAATGGACATAATGGTGGCAATATACGA 759
|||||||||||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 255 TTTGAGAATGAAAGTAGATGGAAACGGAATGGACATAATGGTGGCGATATACGA 308
> Ahg922061 jgi|Araly1|922061|scaffold_103342.1
Length=279
Score = 353 bits (191), Expect = 1e-96
Identities = 226/243 (93%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 518 GAGGCGTTGAATCTGGATACGATGTTTACTCCGCAGCTTGTGA-TCCAAGGTCGTTCTCA 576
|||||||||||||||| |||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 1 GAGGCGTTGAATCTGGGTACGATGTTTACTCCGCAGCTTGT-AGTTCAAGGCCGTTCTCA 59
Query 577 ATTGATCGGAAACGAAGAGGAGACGCTGCTCAAATCTATCTCCGAAGCGCCTAGGTTTCC 636
||||||||||||||| || ||||||||| | ||||| |||||||||||||||||||||||
Sbjct 60 ATTGATCGGAAACGAGGAAGAGACGCTGTTAAAATCAATCTCCGAAGCGCCTAGGTTTCC 119
Query 637 TTCTCCAGCCTTCCGGGCGACTTTCCAGAGACCAACCTCAGAGACACTGCAAGTATCACT 696
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 TTCTCCAGCTTTCCGGGCGACTTTCCAGAGACCAACCTCAGGGACACTGCAAGTATCACT 179
Query 697 CACCGGAGCTTTGAGAATGAAAGTAGACGGAGACGGAATGGACATAATGGTGGCAATATA 756
|||||||||||||||| |||||||||| ||| |||||||||||||||| ||||| |||||
Sbjct 180 CACCGGAGCTTTGAGAGTGAAAGTAGATGGAAACGGAATGGACATAATTGTGGCGATATA 239
Query 757 CGA 759
|||
Sbjct 240 CGA 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5