BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27370.1
Length=3405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492062 jgi|Araly1|492062|fgenesh2_kg.7__1495__AT4G27370.1 4246 0.0
Ahg917116 jgi|Araly1|917116|Al_scaffold_0008_1867 2148 0.0
> Ahg492062 jgi|Araly1|492062|fgenesh2_kg.7__1495__AT4G27370.1
Length=3468
Score = 4246 bits (2299), Expect = 0.0
Identities = 2535/2650 (96%), Gaps = 11/2650 (0%)
Strand=Plus/Plus
Query 760 AGTGGAGAAAGTGGAGCTGGGAAAACTGAGACAGCAAAATATGCAATGCAGTACTTGGAA 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 AGTGGAGAAAGTGGAGCTGGGAAAACTGAGACAGCAAAATATGCAATGCAGTACTTGGAA 885
Query 820 GCTCTTGGTGGAGGTAGCTTTGGGGTGGAAAATGAAATCCTAAAGACAAATTGTATACTT 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 886 GCTCTTGGTGGAGGTAGCTTTGGGGTGGAAAATGAAATCCTAAAGACAAATTGTATTCTT 945
Query 880 GAAGCTTTTGGGAATGCTAAAACATCAAGAAATGATAACTCTAGCCGATTCGGTAAACTG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 946 GAAGCTTTTGGGAATGCTAAAACATCAAGAAATGATAACTCTAGCCGATTCGGAAAACTG 1005
Query 940 ATGGAGATTCATTTTAGTGCAAAGGGAAAGATATGCGGAGCTAAACTTGAAACTTTCTCT 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ATGGAGATTCATTTTAGTGCAAAGGGAAAGATATGCGGAGCTAAACTTGAAACTTTCTCT 1065
Query 1000 TTGGACCAGTCAAGAGTGGCTCAGCTGTGCAATGGCGAGAGATGCTACCATATCTTTTAT 1059
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1066 TTAAACCAGTCAAGAGTGGCTCAGCTGTGCAATGGCGAGAGATCCTACCATATCTTTTAT 1125
Query 1060 CAATTGTGTGCAGGAGCTTCACCAATTCTTAAAGAGAGATTGAAGATTAAAGCAGCAAGT 1119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1126 CAATTGTGTGCAGGAGCTTCACCAATTCTTAAAGAGAGATTGAAGCTTAAAGCAGCAAGT 1185
Query 1120 GAATACAATTATTTGAACCAGAGCAATTGCTTAACCATTGATCGCACTGATGATGCTCAG 1179
|||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1186 GAATACGATTATTTGAACCAGAGCAATTGCTTAATCATGGATCGCACTGATGATGCTCAG 1245
Query 1180 AAATTTCACAAACTGATGGAAGCTTTCAACATTGTTCAAATTCCTCAAGAATACCAAGAA 1239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 AAATTTCACAAATTGATGGAAGCTTTCAACATTGTTCAAATTCCTCAAGAATACCAAGAA 1305
Query 1240 CGTACATTTGCACTGCTTGCAGCTGTGTTATGGCTAGGAAATGTATCTTTTGAAGTGATT 1299
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1306 CGTGTATTTGCACTGCTTGCAGCTGTGTTATGGCTAGGAAATGTATCTTTTAAAGTGACT 1365
Query 1300 GACAATGAAAACCATGTCGAAGTGGTAGCAGATGAAGCTGTCACTAATGTAGCTATGTTA 1359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1366 GACAATGAAAACCATGTCGAAGTGGTAGCAGATGAAGCTGTAACTAATGTAGCTACGTTA 1425
Query 1360 ATGGGCTGCAACTCAAAAAAGCTTATGGTGGTTTTGTCTACATGCAAGCTCCAAGCTGGT 1419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 ATGGGCTGCAACTCAAAAGAGCTTATGGTGGTTTTGTCTACATGCAAGCTCCAAGCTGGT 1485
Query 1420 AGAGATTGCATTGCTAAAAGACTGACATTGCGACAGGCAACTGATATGAGGGATTCTCTG 1479
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1486 AGAGATTGCATTGCTAAAAGACTGACACTGCGACAGGCAACTGATATGAGGGATTCCCTA 1545
Query 1480 GCGAAAATCATCTATGCGAGCTTATTCAACTGGCTTGTTGAGCAAATAAACATTTCACTG 1539
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1546 GCGAAAATCATCTATGCGAGCCTATTCAACTGGCTTGTTGAGAAAATAAACATTTCACTG 1605
Query 1540 GAAGTTGGTAACTCACGTACAGGAAGATCTATTAGTATCCTTGATATATATGGGTTTGAG 1599
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1606 GAAGTTGGTAACTCACGTACAGGAAGATCTATTAGCATCCTTGATATATATGGGTTTGAG 1665
Query 1600 TCATTTAAGGATAATAGTTTCGAACAATTTTGCATAAACTATGCAAATGAAAGACTGCAG 1659
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 TCATTTGAGAATAATAGTTTCGAACAATTTTGCATAAACTATGCAAATGAAAGACTGCAG 1725
Query 1660 CAACATTTCAACCGACATCTATTTAAACTTGAACAAGAGGAATATGAAGGGGATGGAATT 1719
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 CAACATTTCAACCGTCATCTATTTAAACTTGAACAAGAGGAATATGAAGGGGATGGAATT 1785
Query 1720 GATTGGACTAAGGTCGAATTCATAGACAATCAAGAGTGTCTAAATCTGATTGAGAAGAAA 1779
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1786 GATTGGACTAAGGTCGAATTCAAAGACAATCAAGAGTGTTTAAATCTGATTGAGAAGAAA 1845
Query 1780 CCCATTGGTTTGGTATCGCTATTAAATGAGGAATCAAATTTTCCAAAGGCAACTGATACG 1839
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1846 CCCATTGGTTTGGTATCGCTATTAGATGAGGAATCAAATTTTCCAAAGGCTACTGATACG 1905
Query 1840 ACGTTTGCCAACAAGCTCAAGCAGCATTTGAATGCTAACTCTTGTTTCAAGGGAGAGAGA 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 ACGTTTGCCAACAAGCTCAAGCAGCATTTGAATGCTAACTCTTGTTTCAAGGGAGAGAGA 1965
Query 1900 GGTCGGGGTTTCAGAATTAAGCATTATGCCGGAGAGGTTCTCTATAATACAAATGGCTTC 1959
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 GGTCAGGGTTTCAGAATTAAGCATTATGCCGGAGAGGTTCTCTATAATACAAATGGCTTC 2025
Query 1960 CTGGAAAAGAACAGAGATCCGCTGCATGTTGATCTTATCCAACTTTTATCATTGTGCAAA 2019
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2026 CTGGAAAAGAACAGAGATCCGCTACATGTTGATCTTATCCAACTTTTATCATCATGCAAA 2085
Query 2020 TGTCAATTATTGAACCTGTTTTCTACTAAGATGCATCACGATTTTCTAAAGCCGGCAACC 2079
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 2086 TGTCAATTATTGAACCTGTTTTCTACTAAGATGCGTCACGAGTTTCTAAAGCCGGCAACC 2145
Query 2080 TTTTCGGACTCCATGAATCAAAGTGTGATTGCCAAGTTTAAGGGCCAACTTTTCAAGTTG 2139
|||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 2146 TTTTCGGACTCCATGAATCAAAGTGTGATTACAAAATTTAAGGGCCAACTTTTCAAGTTG 2205
Query 2140 ATGAACAAGTTAGAAGACACTACTCCTCATTTTATTCGATGCATAAAACCAAATTCAAAT 2199
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2206 ATGAACAAGTTAGAAGACACCACTCCTCATTTTATTCGATGCATAAAGCCAAATTCAAAT 2265
Query 2200 CAGCTTCCTGGACTTTACGAAGAAAATCATGTTCTACAACAGCTTAGATGTTGTGGCGTT 2259
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2266 CAGCTTCCTGGACTTTACGAAGAGAATCATGTTCTACAACAGCTTAGATGTTGTGGCGTT 2325
Query 2260 TTGGAGATTGTTAGAATATCAAGATCAGGATATCCTACGCGGTTGACACACCAGGAGCTT 2319
||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 2326 TTGGAAATTGTTAGAATTTCAAGATCAGGATATCCTACTCGGTTGACACATCAAGAGCTT 2385
Query 2320 GCAGTAAGATATGGATGCCTACTGCTGGACACAAGAATCTCCCAGGATCCACTTAGCACA 2379
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2386 GCAGTAAGATATGGATGCCTACTGCTGGACACAAGAATCTCCCAGGAGCCGCTTAGCACA 2445
Query 2380 TCAAAAGCTATTTTGAAACAATGCAATCTTCCTCCTGAAATGTATCAAGTTGGTTATACG 2439
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2446 TCAAATGCTATTCTGAAACAATGCAATCTTCCTCCTGAAATGTATCAAGTTGGTTATACG 2505
Query 2440 AAAATATACCTCCGAACTGGAGTAATTAGCGTCCTTGAGGAAAGAA-AAAAGTATGTTTT 2498
||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||
Sbjct 2506 AAAATATACCTCCGAACTGGACTAATTGGCGTCCTTGAGGAAAGAAGAAAA-TATGTTTT 2564
Query 2499 GCGTGGCATACTTGGATTACAGAAGCAATTTCGTGGTTATCAGACTCGTGAATACTTTCA 2558
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2565 GCGTGGCATACTTGGATTACAGAAGCAATTTCGTGGTTATCAGGCTCGTGAATGCTTTCA 2624
Query 2559 CAATATGAGGAATGCTGCAGTGATACTTCAGTCATATATCCGTGGAGAAAATGCCAGGAG 2618
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2625 CAATATGAGGAATGCTGCAGTGATACTTCAGTCATATATCCGCGGAGAAAATGCCAGGAG 2684
Query 2619 AAACTACATTGTGGTAGGAGAATCAGCTATTGTTTCCACAGCAATAACTAAAGAGCTTGA 2678
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2685 AAACTACATTGTGGTAAAAGAATCAGCTATTGTTTCCACAGCAATAACTGAAGAGCTTGA 2744
Query 2679 TGCAGCTATACACTTGCAATATATGGTACGCAAATGGCTGGCTCGTAAACTCTTAAATAG 2738
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2745 TGCAGCTATACACTTGCAATATATGGTACGCAAATGGCTGGCTCGTAAACACTTAAATAG 2804
Query 2739 TACGCAACAGAAGAACAAACCTCGCAATGAGAAGaaaaaaaCGAGAAGAAAGTCAACAAA 2798
|| |||||||||||| ||||| ||||||||||||||| || |||||||||||||||| |
Sbjct 2805 TATGCAACAGAAGAAAAAACCACGCAATGAGAAGAAACAACCGAGAAGAAAGTCAACGAG 2864
Query 2799 GAGGGTTTCCGAAGACAAGGAACT-TCTTT-CAGAGCAGTT-TGAGGTCCAACCTTGTGT 2855
|||||||||||||||||||| | | | ||| | | | || || | ||| ||||||||
Sbjct 2865 GAGGGTTTCCGAAGACAAGGTAGTATTTTTTCCT-G-ATTTATGTGACCCA-CCTTGTGT 2921
Query 2856 TCTTGCTGATCTCCAGAGCCGGGTTCTGAAAGTCGAAGCAGCTATAATGCAGAAGGAAGA 2915
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2922 TCTTGCTGATCTCCAAAGCCGGGTTCAGAAAGTCGAAGCAGCTATAATGCAGAAGGAAGA 2981
Query 2916 TGAAAACACTGCATTGCAGGAGGAGTTGCAACGATTTGAGGAAAGATGGTTAGAGAACGA 2975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2982 TGAAAACACTGCATTGCAGGAGGAGTTGCAACGATTTGAGGAAAGATGGTTAGAGAACGA 3041
Query 2976 AACAAGAATGAAGTCAATGGAGGACACATGGCAAAAGCATATGTCGTCAATGCAGATGAG 3035
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3042 AGCAAGAATGAAGTCAATGGAGGAAACATGGCAAAAGCATATGTCGTCAATGCAGATGAG 3101
Query 3036 TCTCGCAGCTGCCTGTAAGGTTTTGGCTCCAGACAAGACTGCAAGTCACGGTACTGACTC 3095
||||||||||||||||||| || ||||||||||||||||||||||||| |||| ||| ||
Sbjct 3102 TCTCGCAGCTGCCTGTAAGATTCTGGCTCCAGACAAGACTGCAAGTCAAGGTAATGAGTC 3161
Query 3096 AGAAGACACAATGTCCTTTGGAACCCCCACGAAAGAGCTTAAGGGCAGCTTGAGTGACGT 3155
||| || ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 3162 AGAGGATACAATGTCCTTTGGAACTCCCACGAAAGAGCTTAAGCGCAGCTTGAGTGAAGT 3221
Query 3156 TAATAATCTTTCTACAGAATTTGATCAACGAAGCGTCATAATTCACGAAGATCCGAAAAG 3215
|||||||||||||| ||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 3222 TAATAATCTTTCTAGAGAATTTGATCAACGGAGTGTCATAATTCACGAAGATGCGAAAAG 3281
Query 3216 TCTTGTCGAGGTGAAATCAGACTCGATCTCAAACAGGAAGCAGCACGCAGAAGAACTCAG 3275
||||||||||||||| ||| | || ||||| |||||||||||||||||||||||||||
Sbjct 3282 TCTTGTCGAGGTGAATTCACA---GAGCTCAAGCAGGAAGCAGCACGCAGAAGAACTCAG 3338
Query 3276 GAGACTAAAGTCAAGATTTGAGAAATGGAAGAAAGATTACAAAACAAGACTAAGAGAGAC 3335
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3339 GAGACTAAAGTTAAGATTTGAGAAATGGAAGAAAGATTACAAAGCAAGACTAAGAGAGAC 3398
Query 3336 AAAGGCAAGAGTCCGGTTAAATGGTGATGAAGGTCGTCATCGGAATTGGTGGTGCAAGAA 3395
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3399 GAAGGCAAGAATCCGGTCAAATGGTGATGAAGGTCGTCATCGGAATTGGTGGTGCAAGAA 3458
Query 3396 AAGTTATTGA 3405
||||| ||||
Sbjct 3459 AAGTTGTTGA 3468
Score = 950 bits (514), Expect = 0.0
Identities = 686/763 (90%), Gaps = 36/763 (5%)
Strand=Plus/Plus
Query 1 ATGATGAAAAGTTCAGTGAAGGAAATTTTGGAGTCTCTTCGCCTGCTTGATTCAAGC--G 58
|||||||||| |||||||||||||| |||||||||||||||| || |||| ||||| |
Sbjct 1 ATGATGAAAATTTCAGTGAAGGAAACGTTGGAGTCTCTTCGCCAGCATGATGCAAGCGAG 60
Query 59 A-G----A-G-G---TC-T--TCGTCGCTTCCCTCTCCGTCTACTTTCAGGGCTCCAATG 105
| | | | | || | || ||||||||||||| ||||||||||||||||| ||||
Sbjct 61 AGGTTTAAGGAGAATTCGTCGTCCTCGCTTCCCTCTCGGTCTACTTTCAGGGCTCAAATG 120
Query 106 CCGTTGATTCGTCAATCTCTTCCGGCGAAGTTTCGTAATGCAATTTCGCTGGAAAGCAAA 165
|||| ||||||||||||||||||||||| || |||||||||||| ||| ||||||| ||
Sbjct 121 CCGTCCATTCGTCAATCTCTTCCGGCGAACTTCCGTAATGCAATTGCGCCGGAAAGCGAA 180
Query 166 ACCATAGAGAAAGAAGACAAGGATTGGAGCACTGAGCAGATCACACAAT---C-T----- 216
||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 181 ACCATAGAGAAAGAAGACAAGGATTGGAGCACTGAGCAGATCACACAATCGCCATACACG 240
Query 217 GCAGAGAAGGAGAAAACTGGAAATGAAGTTGTGAAGATTAGTACTGCTCAGATGAGTCGA 276
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 241 GCAGAGAAGGAGAAAACTGAAAATGAAGTTGTGAAGATTAGTACTCCTCAGATGAGTCCA 300
Query 277 GCGAAGAACTCGCATGATCCTGAATGGATCAATAGCGCTGAGTATTTCGTCAGGGAGAAA 336
|||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 301 GCGAAGAACTCGCATGATCCTGAATGGATCAATAACGCTGAGTATTTTATCAGAGAGAAA 360
Query 337 CTTTGTGTTTGGTGTCGAGTTGCTGCTAATGGGCAGTGGCACTTGGGGAAGATACATTCT 396
||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTTGTGTTTGGTTTCG-G--GTTGCTAATGGGCAGTGGCACTTGGGGAAGATACATTCT 417
Query 397 ACTTCTTCTAGTGATGATGTGTGTGTTATGCTGTCCGCTAACGACGA---TGT--AAG-A 450
| |||||||||||||||||||||||||| | ||| |||||||||| ||| ||| |
Sbjct 418 A---CTTCTAGTGATGATGTGTGTGTTATGTTATCCACTAACGACGATGTTGTGAAAGTA 474
Query 451 ACAATGGAGGAGATTTTCCCTGCTAACCCAGAGATTTTAGAAGGAGTTGAAGACCTTACT 510
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 475 TCAATGGAGGAGATTTTCCCTGCTAACCCAGAGATTTTGGAAGGAGTTGAAGACCTTACA 534
Query 511 CAGCTTAGTTATTTGAATGAGCCATCTCTTCTCTACAACCTCCGGGTCAGATACTCACAA 570
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 535 CAGCTTAGTTATTTGAATGAACCATCTCTTCTTTACAACCTCCGGGTCAGATACTCGCAA 594
Query 571 GACTTGATTTATAGTAAAGCAGGGCCAGTTTTGATCGCAGTAAATCCTTTTAAGAATGTC 630
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 595 GAATTGATTTATAGTAAAGCAGGGCCAGTTTTGATTGCAGTAAATCCGTTTAAGAATGTC 654
Query 631 CAGATCTATGGAGAAGAGTTTCTATCAGCTTATCAGAAGAATGCTTTGGATGCTCCTCAT 690
||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 655 CAGATCTATGGAGAAGAGTTTCTATCAGCTTATCAGACGAAGGGTTTGGATGCTCCTCAT 714
Query 691 GTTTATGCAGTGGCAGATGCAGCTTATGATGATATGATGAGAG 733
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct 715 GTTTATGCAGTGGCAGATGCAGCTTATGATGAGATGATGAGAG 757
> Ahg917116 jgi|Araly1|917116|Al_scaffold_0008_1867
Length=3660
Score = 2148 bits (1163), Expect = 0.0
Identities = 2283/2810 (81%), Gaps = 131/2810 (5%)
Strand=Plus/Plus
Query 296 CTGAATGGATCAATAGCGCTGAGTATTTCGTCAGGGAGAAACTTTGTGTTTGGTGTCGAG 355
|||| |||| ||||| || |||||| ||| | | | |||||||| | ||||||||||| |
Sbjct 443 CTGAGTGGAACAATAACGTTGAGTACTTCATTAAGAAGAAACTTCGAGTTTGGTGTCG-G 501
Query 356 TTGCTGCTAATGGGCAGTGGC-ACTTGGGGAAGATACATTCTACTTCTTCTAGTGATGAT 414
| | ||||||||| ||||| || ||||||||||||| ||||||||| | |||| |
Sbjct 502 GT-AT-CTAATGGGCTGTGGCAAC-TGGGGAAGATACAGTCTACTTCTGC---TGAT-AC 554
Query 415 GT-G-TGTGTTATGCTGTCCGCT-AACGACGATGT--AAG-AAC-AATGGAGGAGATTTT 467
|| | | ||||||| ||||| || || | | ||| ||| | | |||| ||| ||||
Sbjct 555 GTCGCT-TGTTATGTTGTCCACTGAA-AATGTTGTGAAAGTGTCTACTGGA-GAGCTTTT 611
Query 468 CCCTGCTAACCCAGAGATTTTAGAAGGAGTTGAAGACCTTACT-CAGCTTAGTTATTTGA 526
||||| |||||||| || || ||||| |||||||| |||| | ||||| |||||| | |
Sbjct 612 TCCTGCAAACCCAGATATATTGGAAGGTGTTGAAGATCTTA-TACAGCTCAGTTATCTAA 670
Query 527 ATGAGCCATCTCTTCTCTACAACCTCCGGGTCAGATACTCACAAGACTTGATTTATAGTA 586
|||| |||||| |||| || ||||| || |||||||| || |||||| ||||||||||||
Sbjct 671 ATGAACCATCTGTTCTTTATAACCTTCGTGTCAGATATTCGCAAGACGTGATTTATAGTA 730
Query 587 AAGCAGGGCCAGTTTTGATCGCAGTAAATCCTTTTAAGAATGTCCAGATCTATGGAGAA- 645
||||||| ||||| ||||| || || ||||| || ||||||||| | || |||||| ||
Sbjct 731 AAGCAGGACCAGTATTGATTGCGGTCAATCCATTCAAGAATGTCGAAATTTATGGA-AAT 789
Query 646 GAGT-TTCTATCAGCTTATCAGAAGAATGCTTTGGATGCTCCTCATGTTTATGCAGTGGC 704
|| | || | ||||||||||||||||| ||| |||||||||| ||||||||||| |||||
Sbjct 790 GA-TGTTATCTCAGCTTATCAGAAGAAGGCTGTGGATGCTCCACATGTTTATGCTGTGGC 848
Query 705 AGATGCAGCTTATGATGATATGATGAGAGAGGAGAAGAACCAATCTATTATCATAAGTGG 764
||||| ||||||||||| |||||||| || ||||||||||| |||||||| ||||||||
Sbjct 849 GGATGCCGCTTATGATGAGATGATGAGTGAAGAGAAGAACCAGTCTATTATTATAAGTGG 908
Query 765 AGAAAGTGGAGCTGGGAAAACTGAGACAGCAAAATATGCAATGCAGTACTTGGAAGCTCT 824
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 909 AGAAAGTGGAGCTGGGAAAACTGAGACTGCAAAATTTGCAATGCAGTACTTGGCAGCTCT 968
Query 825 TGGTGGAGGTAGCTTTGGGGTGGAAAATGAAATCCTAAAGACAAATTGTATACTTGAAGC 884
|||||||||||||| ||| || || | |||||||||||||||| || ||||| |||||
Sbjct 969 TGGTGGAGGTAGCTGTGGAGTAGAGTACGAAATCCTAAAGACAACCTGCATACTCGAAGC 1028
Query 885 TTTTGGGAATGCTAAAACATCAAGAAATGATAACTCTAGCCGATTCGGTAAACTGATGGA 944
||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| || ||
Sbjct 1029 TTTTGGGAACGCTAAAACATCAAGGAATGCTAACTCTAGCCGATTTGGTAAACTCATAGA 1088
Query 945 GATTCATTTTAGTGCAAAGGGAAAGATATGCGGAGCTAAACTTGAAACTTTCTC-TTTGG 1003
|||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1089 AATTCATTTTAGTGCAATGGGAAAGATATGTGGAGCCAAACTTGAAACTTTCTTGTTTG- 1147
Query 1004 ACCAGTCAAGAGTGGCTCAGCTGTGCAATGGCGAGAGATGCTACCATATCTTTTATCAAT 1063
||||||||||||||| |||||||| ||||||||| |||| ||||||||| |||||| | |
Sbjct 1148 ACCAGTCAAGAGTGGTTCAGCTGTTCAATGGCGAAAGATCCTACCATATATTTTATGAGT 1207
Query 1064 TGTGTGCAGGAGCTTCACCAATTCTTAAAGAGAGATTGAAGATTAAAGCAGCAAGTGAAT 1123
|||||||||| ||||| || ||||||||||||||||||||| ||||| |||| ||||| |
Sbjct 1208 TGTGTGCAGGTGCTTCGCCGATTCTTAAAGAGAGATTGAAGCTTAAAACAGCCAGTGAGT 1267
Query 1124 ACAATTATTTGAACCAGAGCAATTGCTTAACCATTGATCGCACT-GATGATGCTCAGAAA 1182
| | || ||| |||||| ||||||| ||||||| || | |||||||||||||||
Sbjct 1268 ATACGTACCTGAGCCAGAGTGATTGCTTGACCATTGC-CGGTGTTGATGATGCTCAGAAA 1326
Query 1183 TTTCACAAACTGA-TGGAAGCTTTCAACATTGTTCAAATTCCTCAAGAATACCAAGAACG 1241
||||||||||| | |||||||||| ||||||||||||| ||| |||| | ||||| ||
Sbjct 1327 TTTCACAAACT-ACTGGAAGCTTTTGACATTGTTCAAATCCCTAAAGAGCATCAAGAGCG 1385
Query 1242 TACATTTGCACTGCTTGCAGCTGTGTTATGGCTAGGAAATGTATCTTTT-GAAGTGATTG 1300
|||||||| ||||||| || ||||| |||||||||||||||||||| || || | ||
Sbjct 1386 GGCATTTGCATTGCTTGCGGCAGTGTTGTGGCTAGGAAATGTATCTTTCCGA-GTTACTG 1444
Query 1301 ACAATGAAAACCATGTCGAAGTGGTAGCAGATGAAGCTGTCACTAATGTAGCTATGTTAA 1360
|||||||||| ||||| || |||||||| |||||||||||| | |||| ||||||||||
Sbjct 1445 ACAATGAAAATCATGTGGAGGTGGTAGCGGATGAAGCTGTCGCCAATGCCGCTATGTTAA 1504
Query 1361 TGGGCTGCAACTCAAAAAAGCTTATGGTGGTTTTGTCTACATGCAAGCTCCAAGCTGGTA 1420
||||||||||| || || ||||||||||||||||||| || | || || ||||||||||
Sbjct 1505 TGGGCTGCAACGCAGAAGAGCTTATGGTGGTTTTGTCCACCCGTAAACTTCAAGCTGGTA 1564
Query 1421 GAGATTGCATTGCTAAAAGACTGACATTGCGACAGGCAACTGATATGAGGGATTCTCTGG 1480
|||||| |||||||||| |||||||||||| ||||||||||| ||||||||| | |
Sbjct 1565 CAGATTGTATTGCTAAAAAACTGACATTGCGGCAGGCAACTGACATGAGGGATGGAATAG 1624
Query 1481 CGAAAATC-ATCTATGCGAGC-TTATTCAACTGGCTTGTTGAGCAAATAAACATTTCACT 1538
| ||||| || ||||| | | || ||| |||||||||||||||||||||||||| ||||
Sbjct 1625 C-AAAATTTATTTATGCAAACCTT-TTCGACTGGCTTGTTGAGCAAATAAACATTGCACT 1682
Query 1539 GGAAGTTGGTAACTCACGTACAGGAAGATCTATTAGTATCCTTGATATATATGGGTTTGA 1598
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1683 GGAAGTTGGTAAATCACGTACAGGAAGATCTATAAGCATCCTTGATATATATGGGTTTGA 1742
Query 1599 GTCATTTAAGGATAATAG-TTTCGAACAATTTTGCATAAACTATGCAAATGAAAGACTGC 1657
||||||||| |||| || ||| |||||||| || ||||||||||||||||||||| |||
Sbjct 1743 ATCATTTAAGAATAACAGCTTT-GAACAATTCTGTATAAACTATGCAAATGAAAGATTGC 1801
Query 1658 AGCAACATTTCAACCGACATCTATTTAAACTTGAACAAGAGGAATATGAAGGGGATGGAA 1717
||||||| |||||||| ||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 1802 AGCAACACTTCAACCGGCATTTATTCAAACTTGAACAAGAGGAATATGAAGAAGATGGAA 1861
Query 1718 TTGATTGGACTAAGGTCGAATTCATAGACAATCAAGAGTGTCTAA-ATCTGATTGAGAAG 1776
|||||||||||||||||||||| |||||||||||||||| || | |||| |||||||||
Sbjct 1862 TTGATTGGACTAAGGTCGAATTTGTAGACAATCAAGAGTG-CTTAGATCTAATTGAGAAG 1920
Query 1777 AAACCCATTGGTTTGGTATCGCTATTAAATGAGGAATCAAATTTTCCAAAGGCAACTGAT 1836
||||| ||||||||| | || ||| || | |||||||||||||||||||| |||||||||
Sbjct 1921 AAACCGATTGGTTTGTTGTCTCTACTAGACGAGGAATCAAATTTTCCAAAAGCAACTGAT 1980
Query 1837 ACGACGTTTGCCAACAAGCTCAAGCAGCATTTGAATG-CTAACTCTTGTTTCAAGGGAGA 1895
||| |||||||||||||||||||| || ||||| | | |||||||| ||||| |||||
Sbjct 1981 TTGACCTTTGCCAACAAGCTCAAGCAACACTTGAA-GACCAACTCTTGCTTCAAAGGAGA 2039
Query 1896 GAGAGGTCGGGGTTTCAGAATTAAGCATTATGCCGGAGAGGTTCTCTATAATACAAATGG 1955
||||||||| | |||||| |||| |||||||| ||||||||||||||| ||||||||||
Sbjct 2040 GAGAGGTCGAGCCTTCAGAGTTAATCATTATGCTGGAGAGGTTCTCTATGATACAAATGG 2099
Query 1956 CTTCCTGGAAAAGAACAGAGATCCGCTGCATGTTGATCTTATCCAA-CTTTTATCATTGT 2014
|| |||| |||||||| |||||| ||| || |||||||||| || |||||||||| |
Sbjct 2100 GTTTTTGGACAAGAACAGGGATCCGTTGCCTGCTGATCTTATC-AATCTTTTATCATCAT 2158
Query 2015 GCAAATGTCAATTATTGAACCTGTTTTCTACTAAGATGCATCACGATTTTCTA-AAGCCG 2073
|| | || || | | || ||||||| ||||| |||| | || | | | | |||||
Sbjct 2159 GCGACTGCCAGCTGCTCAAATTGTTTTCAACTAAAATGCGTGACAAATCGC-AGAAGCCA 2217
Query 2074 GCA-ACCTTTTCGGACTCCATGAATCAAAGTGTGATTGC-CAA-GTTTAAGGGCCAACTT 2130
| | || |||||||||| ||| |||| ||| | | ||| ||| ||||| ||||||
Sbjct 2218 -CTTATGTTATCGGACTCCACGAACCAAACTGT--TGGAACAAAGTTCAAGGGTCAACTT 2274
Query 2131 TTCAAGTTGATGAACAAGTTAGAAGA-CACTACTCCTCATTTTATTCGATGCATAAAACC 2189
||||| |||||||||||||||| || ||| | |||||| || |||||||||||||| ||
Sbjct 2275 TTCAAACTGATGAACAAGTTAGA-GAACACAAGTCCTCACTTCATTCGATGCATAAAGCC 2333
Query 2190 AAATTCAAATCAGCTTCCTGGACTTTACGAAGAAAATCATGTTCT-ACAACAGCTTAGAT 2248
||||| || |||||||| || |||| ||||| ||| ||| || ||||||||||||||
Sbjct 2334 GAATTCGAAGCAGCTTCCCAGAGTTTATGAAGAGGATCTTGT-CTTACAACAGCTTAGAT 2392
Query 2249 GTTGTGGCGTTTTGGA-GATTGTTAGAATATCAAGATCAGGATATCCTACGCGGTTGACA 2307
|||||||||| ||||| | ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 2393 GTTGTGGCGTGTTGGAAG-TTGTTAGAATATCAAGATCTGGATATCCTACTCGTTTGACA 2451
Query 2308 CACCAGGAGCTTGCAGTAAGATATGGATGCCTA-C-TGCTGGACACAA-GAATCTCCCAG 2364
|| || ||| |||| | ||||||||| | |||| | | | | ||| || | |||| |||
Sbjct 2452 CATCAAGAGTTTGCGGGAAGATATGGGTTCCTATCGT-CAG-ACAAAAAGG-TCTCTCAG 2508
Query 2365 GATCCACTTAGCACATCAAAAGCTATTTTGAAACAATGCAATC-TTCCTCCTGAAATGTA 2423
||||| || || ||||| ||| || ||||||||| | | | ||| ||||||||||||
Sbjct 2509 GATCCTCTGAGTGTATCAATTGCTGTTCTGAAACAATACGA-CGTTCATCCTGAAATGTA 2567
Query 2424 TCAAGTTGGTTATACGAAAATA-TACCTCCGAACTGGAGTAATTAGCGTCCTTGAGGAA- 2481
|||||| ||||| || ||||| || |||||||||||| |||| | || |||||||
Sbjct 2568 TCAAGTGGGTTACAC-AAAATTGTATCTCCGAACTGGACAAATTGGTATCTTTGAGGATC 2626
Query 2482 --AGAAAAAAGTATGTT-TTGCGTGGCATACTTGGATTACAGAAGCAATTTC-GTGGTTA 2537
|||||||| | ||| || | |||||| | || ||||| ||||| |||| ||||| |
Sbjct 2627 GGAGAAAAAA--A-GTTCTT-CAAGGCATAGTGGGCTTACAAAAGCA-TTTCCGTGGTCA 2681
Query 2538 -TCAGACTCGTGAATACTTTCACAATATGAGGAATGCTG-CAGTGATACTTCAGTCATAT 2595
| | |||||| |||||| || |||||| |||| | | || || | ||||||||||||
Sbjct 2682 CTT-GTCTCGTGCATACTTCCAAAATATGCGGAAAG-TAACATTGGTTCTTCAGTCATAT 2739
Query 2596 ATCCGTGGAGAAAATGCCAGGAGAAACT---ACATTGTGGTAGGAGAATC-A-GCT-ATT 2649
|| || || ||||||||| | |||| | ||| || | | | |||| | || |||
Sbjct 2740 ATACGAGGTGAAAATGCCCGAAGAATGTTTGACACTGAAGCAA-A-AATCCATGCGGATT 2797
Query 2650 --GTTTCC-ACAGCAATAACTAAA-GAGCTTGA-TGCAG-CTATACACTTGCAATATATG 2703
||||| | ||||| || | | ||| |||| |||| | ||||||||||||| | |
Sbjct 2798 CTGTTTCTGA-AGCAAGCAC-AGATGAG-TTGACTGCAATC-ATACACTTGCAATCTGCG 2853
Query 2704 GTACGCAAATGGCTGGCTCGTAAAC-TCTTAAATAGTACGCAACAGA-AGAACA-AACCT 2760
|| || |||| |||||||||||| | || ||| ||| |||| ||| |||| | || |
Sbjct 2854 GTTCGTGGATGGTTGGCTCGTAAACGT-TTCAATGGTATGCAA-AGACAGAA-AGAAT-T 2909
Query 2761 -CGCAATGAGAAGaaaaaaaCGA-GAAGAAAG-TCAACAAAGAGGGTTTCCGAAGACAAG 2817
| ||||| || || |||| | | || ||||| | || |||| |||| |||||||||
Sbjct 2910 ACTCAATGTGACGACAAAATCAAAGAGGAAAGCTGG-CAG-GAGGATTTCAGAAGACAAG 2967
Query 2818 GA-ACTTC-TTTCAGAGCAGTTTGAGGT-C--CAACCTTGTGTTCTTGCTGATCTCCAGA 2872
|| | ||| ||| ||||||| | || | ||||| | | | | ||||||||||||
Sbjct 2968 GATA-TTCCTTTG-GAGCAGTCCCAAGTTCAACAACCATCTATG-T--CTGATCTCCAGA 3022
Query 2873 GCCGGGTTCTGAAAGTC-GAAGCAGCTATAATGCAGAAGGAAGATGAAAACACTGCATTG 2931
|||||| ||||| || ||||||||| || |||||||||||| |||||||| || |||
Sbjct 3023 AACGGGTTTTGAAA-TCTGAAGCAGCTTTAGCGCAGAAGGAAGAAGAAAACACAGCTTTG 3081
Query 2932 CAG-GAGGAGTTGCAA-CGATTTGAGGAAAGATGGTTAGAGAACGAAACAA-GAATGAAG 2988
|| ||| ||||| | | ||||||||| ||||||| |||| | || | || || |||||
Sbjct 3082 -AGAGAGCAGTTG-AGGCAATTTGAGGAGAGATGGTCAGAGTATGATATAAAGA-TGAAG 3138
Query 2989 TCAATGGAGGACACATGGCAAAAGCATATGTCGTCAATGCAGATGAGTCT 3038
||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 3139 TCAATGGAGGAAACATGGCAAAAGCAAATGTCGTCATTGCAGATGAGTCT 3188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128558481594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5