BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27380.1

Length=779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg354063 jgi|Araly1|354063|fgenesh1_pg.C_scaffold_7001236           344    5e-94


> Ahg354063 jgi|Araly1|354063|fgenesh1_pg.C_scaffold_7001236
Length=420

 Score =  344 bits (186),  Expect = 5e-94
 Identities = 237/261 (91%), Gaps = 5/261 (2%)
 Strand=Plus/Plus

Query  97   ATGACGAAGAAGAGGAACAAGAAGAATAGAGACGAGGAAGCTTCCATGGACGTTTCTGAA  156
            ||||||||||| ||||||||||||||||||||||| || | ||||||||||||||| |||
Sbjct  1    ATGACGAAGAAAAGGAACAAGAAGAATAGAGACGACGACGTTTCCATGGACGTTTCCGAA  60

Query  157  TCTCAGAGCGTCTCTG-A--AGCTACTCCTCAAGTGATGGACACTACGGAGACCGGTGAC  213
            |||||||||||||| | |  |||| |||||||||  ||||| ||||||||||||||||||
Sbjct  61   TCTCAGAGCGTCTCCGAAGCAGCTGCTCCTCAAGCCATGGATACTACGGAGACCGGTGAC  120

Query  214  GGGAAACTAGCTTCTCGTGCTCGTAGCTTGATGAGCACGAGGAAAGGAAAACCGATGAAG  273
            |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  121  GGGAAACTAGCTGCTCGTGCTCGTAGCTTGATAAGCGCGAGGAAAGGAAAACCGATGAAG  180

Query  274  AGAACGAAGATTGCAA-TGAATATGAAAGCTGTGGCTGTAGCCATGGACACTACGGAAAC  332
            ||||||| || ||||| | |||||||||||  ||||||||||||||||||||| ||||||
Sbjct  181  AGAACGAGGAATGCAAGT-AATATGAAAGCCATGGCTGTAGCCATGGACACTATGGAAAC  239

Query  333  CGGTGACGTGAAACTAGCTAC  353
            ||| |||||||||||||||||
Sbjct  240  CGGAGACGTGAAACTAGCTAC  260


 Score =  298 bits (161),  Expect = 4e-80
 Identities = 181/191 (95%), Gaps = 0/191 (0%)
 Strand=Plus/Plus

Query  377  CTACGGAAACCGGATACCTGAAACTAGCTACTCTTTCTCGTAACCCGACAAACATGAAGA  436
            ||| |||||||||| || ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct  230  CTATGGAAACCGGAGACGTGAAACTAGCTACTCTTGCTCGTAACCCGACAAGCATGAAGA  289

Query  437  GAACAAAGAATGCAAGGAAGATGAAAGCCGTGGCTAAAGCTATAGCGTTGAGCGAGAAGT  496
            |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  290  GAACGAAGAATGCAAGGAAGATGAAAGCTGTGGCTAAAGCTATAGCGTTGAGCGAGAAGT  349

Query  497  ATGAAGCGAAAGCTACAAAGGACAAAACCAAAACCCTCAGAACTCTTTCGGCCAAGAAAT  556
            ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct  350  ATGAAGCAAAAGCTACAAAGGACAAAACCAAAACTCTCAGAACTCTTTCAGCCAAGAAAT  409

Query  557  TGTACGAGTGA  567
            |||||||||||
Sbjct  410  TGTACGAGTGA  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28744679418


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5