BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27410.3
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492058 jgi|Araly1|492058|fgenesh2_kg.7__1491__AT4G27410.3 1541 0.0
Ahg950321 jgi|Araly1|950321|scaffold_802208.1 283 1e-75
> Ahg492058 jgi|Araly1|492058|fgenesh2_kg.7__1491__AT4G27410.3
Length=951
Score = 1541 bits (834), Expect = 0.0
Identities = 913/952 (96%), Gaps = 2/952 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGTTAGAGAGAAAGATCCGTTAGCCCAGTTGAGTTTGCCACCAGGTTTTAGATTT 60
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGGTGTTAGAGAGAAGGATCCGTTAGCCCAATTGAGTTTGCCACCGGGTTTTAGATTT 60
Query 61 TATCCGACAGATGAAGAGCTTCTTGTTCAGTATCTATGTCGGAAAGTTGCAGGCTATCAT 120
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TATCCGACAGATGAAGAACTTCTAGTTCAGTATCTATGTCGGAAAGTTGCAGGCTATCAT 120
Query 121 TTCTCTCTCCAGGTCATCGGAGACATCGATCTCTACAAGTTCGATCCTTGGGATTTGCCA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTCTCTCCAAGTCATCGGAGACATCGATCTCTACAAGTTCGATCCTTGGGATTTGCCA 180
Query 181 AGTAAGCAAACATGTTTCACATTTGTAGGGGAGTATAATTGTAACTATTT-AGGTAAGGC 239
||||||||||||||||| |||||| ||||||| ||| ||||||| | ||| |||||| ||
Sbjct 181 AGTAAGCAAACATGTTTTACATTTTTAGGGGACTATTATTGTAAAT-TTTCAGGTAAAGC 239
Query 240 TTTGTTTGGAGAGAAGGAATGGTATTTCTTTAGCCCAAGAGATCGGAAATATCCGAACGG 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTGTTTGGAGAAAAGGAATGGTATTTCTTTAGCCCAAGAGATCGGAAATATCCGAACGG 299
Query 300 GTCAAGACCCAATAGAGTAGCCGGGTCGGGTTATTGGAAAGCAACGGGTACTGACAAAAT 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 GTCAAGACCCAATAGAGTAGCCGGGTCGGGTTATTGGAAAGCGACGGGTACTGACAAAAT 359
Query 360 TATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTCTTTTACGCCGGAAA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTTTTTTACGCCGGAAA 419
Query 420 AGCTCCCAAAGGCACTAAAACCAACTGGATTATGCACGAGTATCGCTTAATAGAACATTC 479
||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||
Sbjct 420 AGCTCCCAAAGGCACTAAAACAAACTGGATTATGCATGAGTATCGCTTAATCGAGCATTC 479
Query 480 TCGTAGCCATGGAAGCTCCAAGTTGGATGATTGGGTGTTGTGTCGAATTTACAAGAAAAC 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TCGTAGCCATGGAAGCTCCAAGTTGGATGATTGGGTATTGTGTCGAATTTACAAGAAAAC 539
Query 540 ATCTGGATCTCAGAGACAAGCTGTTACTCCTGTTCAAGCTTGTCGTGAAGAGCATAGCAC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 ATCTGGATCTCAGAGACAAGCTGTTACTCCGGTTCAAGCTTGTCGTGAAGAGCATAGCAC 599
Query 600 GAATGGGTCGTCATCGTCTTCTTCATCACAGCTTGACGACGTTCTTGATTCGTTCCCGGA 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GAATGGGTCGTCATCGTCTTCTTCGTCACAGCTTGACGACGTTCTTGATTCGTTCCCGGA 659
Query 660 GATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCAGGACGATTCTTAACGG 719
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 660 GATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCTCTCAGGACGCTTCTTAACGG 719
Query 720 GAACTTTGATTGGGCTAGCTTGGCAGGTCTTAATCCAATTCCAGAGCTAGCTCCGACCAA 779
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GAATTTTGATTGGGCTAGCTTGGCAGGTCTTAATCCAATCCCAGAGCTAGCTCCGACCAA 779
Query 780 TGGATTACCGAGTTACGGTGGTTACGATGCGTTTCGAGCGGCGGAAGGTGAGGCGGAGAG 839
|||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 780 CGGATTACCGAGTTACGGTAGCTACGATGCGTTTCGAGCGGCGGAAGGGGAGGCGGAGAG 839
Query 840 TGGGCATGTGAATCGGCAGCAGAACTCGAGCGGGTTGACTCAGAGTTTCGGGTACAGCTC 899
|||||| ||||||| ||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct 840 TGGGCACGTGAATCAGCAGCAGAACTCGGGCGGGTTGACTCAGAGTTACGGGTATAGCTC 899
Query 900 GAGTGGGTTTGGTGTTTCGGGTCAAACATTCGAGTTTAGGCAATGAGAGAGA 951
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGCGGGTTTGGTGTTTCGGGTCAAACATTCGAGTTTAGGCAATGAGAGAGA 951
> Ahg950321 jgi|Araly1|950321|scaffold_802208.1
Length=444
Score = 283 bits (153), Expect = 1e-75
Identities = 169/176 (96%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 531 CAAGAAAACATCTGGATCTCAGAGACAAGCTGTTACT---CCTGTTCAAGCTTGTCGTGA 587
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 197 CAAGAAAACATCTGGATCTCAGAGACAAGCTGTTACTACCCCGGTTCAAGCTTGTCGTGA 256
Query 588 AGAGCATAGCACGAATGGGTCGTCATCGTCTTCTTCATCACAGCTTGACGACGTTCTTGA 647
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 257 AGAGCATAGCACGAATGGGTCGTCATCGTCTTCTTCGTCTCAGCTTGACGACGTTCTTGA 316
Query 648 TTCGTTCCCGGAGATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCA 703
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 317 TTCGTTCCCGGAGATAAAAGATCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCA 372
Score = 250 bits (135), Expect = 1e-65
Identities = 143/147 (97%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 355 AAAATTATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTCTTTTACGCC 414
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 54 AAAATTATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTTTTTTACGCC 113
Query 415 GGAAAAGCTCCCAAAGGCACTAAAACCAACTGGATTATGCACGAGTATCGCTTAATAGAA 474
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 114 GGAAAAGCTCCCAAAGGCACTAAAACAAACTGGATTATGCACGAGTATCGCTTAATCGAG 173
Query 475 CATTCTCGTAGCCATGGAAGCTCCAAG 501
|||||||||||||||||||||||||||
Sbjct 174 CATTCTCGTAGCCATGGAAGCTCCAAG 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5