BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27420.1
Length=2152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328954 jgi|Araly1|328954|fgenesh1_pm.C_scaffold_7001181 3055 0.0
> Ahg328954 jgi|Araly1|328954|fgenesh1_pm.C_scaffold_7001181
Length=1920
Score = 3055 bits (1654), Expect = 0.0
Identities = 1835/1923 (95%), Gaps = 9/1923 (0%)
Strand=Plus/Plus
Query 1 ATGGATAATCAAGAGGTTTCTATGGATGTTGAAACCCCGATCGCGAAGACCAACGATGAT 60
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 ATGGATAGTCAAGAGGTTTCTATGGATGTTGAAGCCCCGATCGAGAAGACCAACGATGAT 60
Query 61 CGATCTCTTCCTTTTTCAATTTTCAAAAAGGCTAATAATCCTGTTACCTT-AA--AGTTT 117
||||| ||||||||||||||||| ||||||||||||| |||||||||||| || |||||
Sbjct 61 CGATCCCTTCCTTTTTCAATTTTTAAAAAGGCTAATACTCCTGTTACCTTAAAGCAGTTT 120
Query 118 GAGAACCTTGTGTACACGGTGAAGCTGAAGGATTCACAAGGCTGTTTCGGAAAGAATGAC 177
|||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 121 GAGAACCTTGTGTACACGGTGAAGCTGAAGGAACCACAAGGCTGGTTCCGAAAGAATGAC 180
Query 178 AAAACCGAGGAGCGAACCATCTTGAAGGGCTTAACAGGGATCGTCAAACC-GGGAGAGAT 236
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 181 AAAACCGAGGAGCGAACCATCTTGAAGGGCTTAACAGGGATCGTCAAACCTGGG-GAGAT 239
Query 237 CTTGGCTATGCTTGGTCCCTCCGGGAGCGGCAAGACCAGCTTGTTGACGGCTTTAGGAGG 296
| |||||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 240 CCTGGCTATGCTCGGTCCCTCCGGGAGCGGTAAGACCAGCTTGTTGACGGCTCTCGGAGG 299
Query 297 ACGGGTTGGGGAAGGTAAAGGAAAGCTCACAGGGAACATATCTTACAATAACAAGCCATT 356
|||||| |||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 300 ACGGGTAGGGGAAGGGAAAGGGAAGCTCACTGGGAACATATCTTACAACAACAAGCCATT 359
Query 357 ATCCAAAGCTGTGAAACGAACTACGGGTTTCGTGACTCAAGATGATGCTCTTTACCCTAA 416
||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 360 ATCCAAAGCTGTGAAGCGAAGGACCGGTTTCGTGACTCAAGATGATGCTCTTTACCCTAA 419
Query 417 CTTGACTGTTACGGAAACTCTAGTATTCACTGCGCTTCTTAGGCTTCCTAATTCTTTTAA 476
|||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 420 CTTGACTGTTACAGAAACTCTAGTCTTCACCGCGCTTCTTCGGCTTCCTAATTCTTTTAA 479
Query 477 AAAACAAGAGAAGATCAAACAAGCTAAGGCAGTCATGACTGAACTGGGTCTAGACAGATG 536
| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 480 ACAACAAGAGAAGATCAAACAAGCTAAGGTAGTCATGACTGAATTGGGTCTAGACAGATG 539
Query 537 TAAGGATACTATCATTGGAGGACCCTTCTTGAGAGGTGTTTCAGGTGGTGAGAGGAAAAG 596
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TAAGGACACTATCATTGGAGGACCCTTCTTGAGAGGTGTTTCCGGTGGTGAGAGGAAAAG 599
Query 597 GGTTAGTATAGGGCAAGAGATTCTTATAAACCCTAGTTTGCTCTTTCTTGATGAGCCCAC 656
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 600 AGTTAGTATAGGGCAAGAGATTCTTATAAACCCTAGTTTGCTTTTTCTTGATGAGCCTAC 659
Query 657 TTCTGGGCTTGATTCTACCACTGCTCAAAGGATTGTGTCGATTTTGTGGGAACTGGCTCG 716
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TTCTGGTCTTGATTCTACCACTGCTCAAAGGATCGTGTCGATTTTGTGGGAACTGGCTCG 719
Query 717 TGGTGGGAGAACGGTCGTGACTACAATTCATCAACCTTCTAGTAGGTTGTTCTATATGTT 776
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGTGGAAGAACGGTCGTGACCACAATTCATCAACCTTCTAGTAGGTTGTTCTATATGTT 779
Query 777 TGATAAGCTTCTGCTCCTTTCAGAAGGTAATCCGGTCTACTTCGGGCTTGGATCCAATGC 836
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 780 TGATAAGCTTCTGCTCCTTTCAGAAGGTAATCCGATCTACTTCGGGCTTGGATCCAGTGC 839
Query 837 TATGGATTATTTTGCTAGCGTTGGATACTCCCCCTTAGTCGAAAGGATTAATCCCTCGGA 896
|||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 840 TATGGATTATTTTGCTAGAGTTGGATGCTCCCCCTCAGTTGAAAGGATTAATCCCTCGGA 899
Query 897 TTTTCTCTTGGACATCGCAAACGGTGTTGGATCAGATGAATCCCAAAGACCAGAGGCTAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTTCTCTTGGACATCGCAAACGGTGTTGGATCAGATGAATCCCAAAGACCAGAGGCTAT 959
Query 957 GAAGGCAGCTCTAGTTGCGTTTTACAAGACAAACCTGTTGGACAGTGTTATCAATGAGGT 1016
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 GAAAGCAGCTCTAGTTGCGTTTTACAAGACAAACCTGTTGGACAATGTTATCAATGAGGT 1019
Query 1017 TAAAGGACAAGATGATCTATGTAACAAACCAAGAGAGAGTTCTCGTGTAGCGACCAATAC 1076
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 1020 TAAAGGACAAGATGATCTATGTAACAAACCAATAGAGAGTCCTCGTGGAGCGACCAATA- 1078
Query 1077 CT-ATGGAGACTGGCCAACGACGTGGTGGCAGCAGTTTTGTGTTCTTTTGAAGAGAGGCC 1135
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CTAATGGAGAGTGGCCAACGACGTGGTGGCAGCAGTTTTGTGTTCTTTTGAAGAGAGGCC 1138
Query 1136 TTAAGCAAAGGCGTCACGATTCTTTCTCTGGCATGAAAGTTGCTCAGATATTCATCGTCT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1139 TTAAGCAAAGGCGTCACGATTCTTTCTCTGGCATGAAAGTTGCTCAGATATTCCTCGTCT 1198
Query 1196 CTTTCCTCTGTGGTCTTCTTTGGTGGCAAACGAAAATTTCTCGATTACAAGATCAGATAG 1255
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1199 CTATCCTCTGTGGTCTTCTTTGGTGGCAAACGAAAATTTCTCGTTTACAAGATCAGATAG 1258
Query 1256 GGCTGTTGTTCTTTATCTCATCCTTTTGGGCATTCTTCCCTCTCTTCCAACAAATCTTCA 1315
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1259 GGCTGTTGTTCTTTATATCATCCTTCTGGGCATTTTTCCCTCTCTTCCAACAAATCTTCA 1318
Query 1316 CATTTCCTCAAGAGCGAGCAATGCTCCAGAAAGAACGTTCTTCGGG-GATGTACAGGCTC 1374
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1319 CATTTCCTCAAGAGCGAGCAATGCTCCAGAAAGAACGTTCCTCGGGCG-TGTACAGGCTC 1377
Query 1375 TCGCCTTACTTCCTGTCCCGAGTAGTCGGGGATCTACCAATGGAGCTTATATTACCAACT 1434
|||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1378 TCGCCTTACTTCATGTCCCGATTAGTCGGGGATCTACCAATGGAGCTTATTTTACCAACT 1437
Query 1435 TGTTTTCTTGTCATCACATATTGGATGGCCGGTCTAAACCATAACCTCGCAAACTTTTTT 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGTTTTCTTGTCATCACATATTGGATGGCCGGTCTAAACCATAACCTCGCAAACTTTTTT 1497
Query 1495 GTGACCCTTTTGGTACTCCTCGTCCATGTCCTTGTCTCGGGTGGGCTAGGGCTAGCCCTA 1554
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1498 GTGACCCTTTTGGTACTCCTCGTCCATGTCCTTGTCTCCGGTGGGCTAGGACTAGCCCTA 1557
Query 1555 GGTGCCCTAGTTATGGACCAGAAGTCAGCCACAACACTCGGGTCAGTCATAATGCTCACG 1614
|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1558 GGCGCCCTAGTTATGGACCAGAAGACAGCCACGACACTCGGGTCAGTCATAATGCTCACA 1617
Query 1615 TTTTTGTTAGCAGGAGGATACTACGTTCAACATGTACCAGTGTTCATCTCTTGGATTAAA 1674
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1618 TTTTTGTTAGCAGGAGGATACTACGTTCAACATGTCCCAGTGTTCATCTCTTGGATTAAA 1677
Query 1675 TACGTATCAATCGGTTACTATACATATAAACTACTGATATTGGGTCAGTACACGGCGAAT 1734
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1678 TACGTATCAATAGGTTACTATACCTATAAACTACTGATATTAGGTCAGTACACGGCGAAT 1737
Query 1735 GAGTTGTATCCATGTGGCGATAATGGGAAATTGAGGTGTCATGTTGGTGACTTTGAAGGT 1794
|||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1738 GAGTGGTATCCATGTGGCGAAAATGGGATATTGAGGTGTCATGTTGGTGACTTTGAAGGT 1797
Query 1795 ATCAAGCATATAGGGTTTAATAGTGGATTAGTCTCTGCCTTAGCTTTAACTGCGATGCTT 1854
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1798 ATCAAGCATATAGGATTTAATAGTGGATTGGTCTCTGCCTTAGCTTTGACTGCGATGCTT 1857
Query 1855 GTTGTTTATAGAGTTATAGCTTATATCGCTTTGACGAGGATTGGTAAGACCAAATCTGGC 1914
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GTTGTTTATAGAGTTATTGCTTATATCGCTTTGACGAGGATTGGTAAGACCAAATCTGGC 1917
Query 1915 TGA 1917
|||
Sbjct 1918 TGA 1920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80979860870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5