BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27430.1
Length=3626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492054 jgi|Araly1|492054|fgenesh2_kg.7__1487__AT4G27430.1 5380 0.0
> Ahg492054 jgi|Araly1|492054|fgenesh2_kg.7__1487__AT4G27430.1
Length=3449
Score = 5380 bits (2913), Expect = 0.0
Identities = 3288/3468 (95%), Gaps = 29/3468 (1%)
Strand=Plus/Plus
Query 103 AAAGATTGAAtttttttGCTTGTTGTGGGTTCTTTAATGGATCCAAGAACAAGACTTGAC 162
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACATTGAATCTTTTTGCTTGTTGTGGGTTCTTTAATGGATCCAAGAACAAGACTTGAC 60
Query 163 TATGCTCTGTTTCAGCTCACACCAACTAGAACAAGATGTGATCTTGTGATATTCTCTGGT 222
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 61 TATGCTCTGTTTCAGCTCACACCAACTAGAACAAGATGTGACCTTGTGATTTTCTCTGGT 120
Query 223 GGTGAGAATGAGAAACTTGCTTCTGGGATTTTTCAACCTTTCGTTACGCATCTCAAGAGC 282
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 GGTGAGAATGAGAAACTTGCTTCTGGGATTTTTCAACCGTTCGTTACCCATCTCAAGAGC 180
Query 283 GTTAGTGATCAGATTTCTAAAGGTGGATACTCCGTTACTCTCCGTCCTTCCTCCGTTGGT 342
||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct 181 GTTAGAGATCAGATTTCTAGAGGTGGATACTCCGTCACTCTCCGTCCTTCCTCCGTCGGT 240
Query 343 GTTCCTTGGTTTACTAAAGTGACCCTTCAGAGATTTGTGCGATTTGTGACTACTCCGGAG 402
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GTTCCTTGGTTTACTAAAGTGACCCTTCAGAGATTTGTCCGATTTGTGACTACTCCGGAG 300
Query 403 GTTCTTGAGAGGTCTGTAACATTAGAGAAGGAGATTGAGCAGATCGAGGATTCGATTCAA 462
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GTTCTTGAGAGGTCTGTAACGTTAGAGAAGGAGATTGAACAGATCGAGGATTCGATTCAA 360
Query 463 GCTAATGCAGCCGCCATTGCCGGTGAAGCTGAAGGAAACGAGTTGGGTGGTACATGGACT 522
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTAATGCAGCCGCCATTGCCGGCGAAGCTGAAGGAAACGAGTTGGGTGGTACATGGACT 420
Query 523 TCTCAAAAGTCTACGGCTTTATCAAAGACGAAAGGGGAAACTGATGGAGACACTGTGGAA 582
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TCTCAAAAGTCTACGGTTTTATCAAAGACGAAAGGGGAAACTGATGGAGTCACTGTGGAA 480
Query 583 GAAAATTCGAAGGTTGGTCTTCAGCGTGTTCTGGAGAACCGTAAAGCGGCTTTGTGCAAA 642
|||||||| ||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 481 GAAAATTCTAAGGTTGGTCTTCAGCGTGTTTTGGAGAACCGCAAGGCGGCTTTGTGCAAA 540
Query 643 GAGCAAGCGATGGCTTATGCTCGAGCTTTGGTTGTTGGGTTTGAACTTGACTACATGGAT 702
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 541 GAGCAAGCGATGGCTTATGCTCGAGCTTTGGTTGTTGGATTTGAAGTGGACTACATGGAT 600
Query 703 GACCTCTTT-TCGTTT-GCTGATGCTTTCGGAGCTTCGCGGTTAAGGGAAGCGTGTGTTA 760
||||| ||| || ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 GACCT-TTTGTC-TTTCGCTGATGCTTTTGGAGCTTCGCGGTTAAGGGAAGCGTGTGTTA 658
Query 761 ACTTTGTGGACTTGTGCAAGAGAAAGAACGAGGATAGAATGTGGGTGGACCAAATCACTG 820
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 659 ACTTTGTGGACTTGTGCAAGAGAAAGAACGAAGATAGAATGTGGGTGGACCAAATCACGG 718
Query 821 CTATGCAAGCATTTCCTAGGCCTGAATTAACGTTCATGGGTGACTCTGGGATCGTACTCG 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTATGCAAGCATTTCCTAGGCCTGAATTAACGTTCATGGGTGACTCTGGGATCGTACTCG 778
Query 881 CTGGTGAAGAGAATGATTTGTTGAATGCTACAAACGTAAAGCATGGAAACTCTATGGATG 940
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 779 CTGGTGAAGAGAATGATTTGTTGAATGCTACTAACGTAAAGCATGGAAACTCCATGGATG 838
Query 941 CCTCGAGCCAGGGTAGCTTTGAGACTGGCCAAGAAGGGAGAGCTCAAATGGCAATGCCGT 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCTCGAGCCAGGGTAGCTTTGAGACTGGCCAAGAAGGGAGAGCTCAAATGGCAATGCCGT 898
Query 1001 GGCCAAACCAGTTTCCTCAGTACATGCAGAACTTTCAAGGACATGGGTATCCGCCTCCTT 1060
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 GGCCAAACCAGTTTCCTCAGTACATGCAGAACTTTCAAGGACATGGGTAT---CCTCCTT 955
Query 1061 ATATGTTTCCGGGGATGCAAGGTCAATCACCATATTTCCATGGGAATATGCAATGGCCTG 1120
|||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| |
Sbjct 956 ATATGTTTCCGGGGATGCAAGGCCAGTCACCATATTTCCCTGGTAATATGCAATGGCCCG 1015
Query 1121 TAAACATGGGAGATGTGGAGTCAAATGAGAAGTCTTCCaagaagaaaaagaagaagaaga 1180
|||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 1016 TAAATATGGGAGATGTGGAGTCAAATGAGAAGTCTTCCAAGAAG--AAA-AAGAAGAACA 1072
Query 1181 agaataagaagaagtcgaagcaagaTGAATCTGCCGAGCCAAGCGATAATTCCAGTACTG 1240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGAACAAGAAGAAGTCGAAGCAAGATGAATCTGCCGAGCCAAGCGATAATTCCAGTACTG 1132
Query 1241 AGACCGAATCAGAAGACGGAAATGAAGGAAAGAAACAATCCAGGAAAGTGGTTATCCGCA 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AGACCGAATCAGAAGACGGAAATGAAGGAAAGAAACAATCCAGGAAAGTGGTTATCCGCA 1192
Query 1301 ACATAAATTATATAACTTCAAAGAGGAATGGAGCGAAGGAGAGTGATTCAGATGAGTCTG 1360
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 1193 ACATAAATTATATAACTTCAAAGAGGAACGGAGCGAAGGAGAGCGATTTGGATGAGTCTG 1252
Query 1361 GAGAAGAAGAAGGGTTTGTGGATGGAGATTCTATTAAGCAGCAAGTAGAAGAAGCCATTG 1420
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1253 AAGAAGAAGATGGGTTTGTGGATGGAGATTCTATCAAGCAGCAAGTAGAAGAAGCCATTG 1312
Query 1421 GCTCAGTGGAGAGACGTCATAAATCGACTTCACACCGTCAGAGGAAACACAAAAGTCACA 1480
|||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1313 GCTCAGTGGAGAGACGGCATAAATCAACTTCACGCCGTCAGAGGAAACACAAAAGTCACA 1372
Query 1481 ACGGTGATGATGATTCAAGTAACAAGGAAACTAAGGGGAATGATAATTGGGATGCCTTCC 1540
||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1373 ACGTTGACGATGATTTAAGTAACAAGGAAACTAAGGCGAATGATAATTGGGATGCCTTCC 1432
Query 1541 AGAATCTTCTTTTGAAAGACAATGATTCAGAGCCAGAAGAATTACTACGTATATCATCAA 1600
||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||
Sbjct 1433 AGAATCTTCTTTTGAAAGACAATGACTCAGAGCCAGAAGAATCACTACGAACATCATCAT 1492
Query 1601 CTGCGTTAAATATGGCGTCTGAAGTTGTGAGAAAGAGAGAACCGCCTTCTGATGATTCAT 1660
|||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1493 CTGCGTTAAACATGGAGTCTGAAGTTGTGAGAAAGAGAGAACCACCTTCGGATGATTCAT 1552
Query 1661 TCTTGGTTGCAATTGGAAATGAGGATTGGGGAAGAGAAACCAGCATTGAGAAATTCAATG 1720
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TCTTGGTTGCAAATGGAAATGAGGATTGGGGAAGAGAAACCAGCATTGAGAAATTCAATG 1612
Query 1721 CAGGTGAGAATGTTCGGATAATAAGGAAAGGGAACAACTATGACGAGGAGATGTTGAATC 1780
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1613 CAGGTGAGAATGTTCGGATGATAAGGAAAGGGAACAACTATGACGATGAGATGTTGAATC 1672
Query 1781 CGGGTAGAAGCGATGAATCAAGAAGCTATTCGCAGGCAGAGATGTCGGTTCATGATGGGA 1840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1673 CGGGTAGAAGCGATGAATCAAGAAGCTATTCGCAGGCAGAGATGTCGGTTTATGATGGGA 1732
Query 1841 AGCTCAGAACCAGAAATGAGGCGGAAGAAGACTGGTTCATACGTAACCAAGCTGGTCCAG 1900
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1733 AGCTCAGAGCCAGAAATGAGGCAGAAGAAGACTGGTTCATACGTAACCAAGCTGGTCTAG 1792
Query 1901 AAACAGATCCAAGTCTTGTCAAAACATTTGTAGGAGACCATTTCCACTTAAATAAGAGCA 1960
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1793 AAACAGATCCAGGTCTTGTCAAAACATTTGTAGGAGACCATTTCCAATTAAATAAGAGCA 1852
Query 1961 GTGAGAGAGATGTCCTGACCGATGACTCTTTCATGATCCATTCTCGTGTTGAGAACCAAG 2020
||||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1853 GTGAGGGAGATGTCCTAACCGATGACTCCTTCATGATCCATTCTCGTGTTGAGGGCCAAG 1912
Query 2021 TAGAAGATTCTCGGTTAAGGACAGAAATCATGGACTTAGACGTTTACGGAACCACCCAAC 2080
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1913 TAGAAGAGTCTCGGTTAAGGACAGAAATCATGGACTCAGACGTTTACGGAACCACCCAAC 1972
Query 2081 AAGAAAACAGTGCCCCGGAGAACACTCCGCATGAACCAGATGACCTATACATGGTTCTTG 2140
||||||||| ||||| |||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 1973 AAGAAAACAATGCCCAGGAGAACACTTTGCATGAGCCAGATGACCTTTACATGGTTCTTG 2032
Query 2141 GACGGGAACAAGATGTTAAACCTACATTGTTACCATGGACCCCTGAAATTGACTTTGAGA 2200
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2033 GACGGGAACAAGATGTTAAACCTACATTGTTACCGTGGACCCCTGAAATTGACTTCGAGA 2092
Query 2201 CTAACACTTTGGCTCAAAGAACAAGCAGAATCGATTTG-ATAACTGCCACAAAGGCCTCT 2259
|||||||||||||||||| |||||||| ||| |||||| | ||||| ||||||| |||||
Sbjct 2093 CTAACACTTTGGCTCAAAAAACAAGCAAAATGGATTTGGA-AACTGACACAAAGACCTCT 2151
Query 2260 GCAGGTGAACAAACCTTAGATGGTAAAGAAAAGAAGAGTCGTGGTATCTCCAAGGGGAAG 2319
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 GCCGGTGAACAAACCTCAGATGGTAAAGAAAAGAAGAGTCGTGGTATCTCCAAGGGGAAG 2211
Query 2320 GATGCAAAGTCAAGAGCATCAAGTAGACCTGACCCGGCGTCAAAAGCCAAGAGACCTGCT 2379
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2212 GATGCAAAGTCAAGAGCATCTAGTAGACCTGACCCGGCGTCAAAAGCCAAGAGACCTGCT 2271
Query 2380 TGGGGAAGTAGAGCTGCTGTCTCCAAGTCCAAATCCGAGATGGAGGAAGAGAGAAAGAAG 2439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 TGGGGAAGTAGAGCTGCTGTCTCCAAGTCCAAATCCGAGATGGAGGAAGAGAGAAAGAAG 2331
Query 2440 AGAATGGAGGAACTTTTAATTCAGAGGCAAAAGAGAATTGCGGAGAAGAGTTCCGGTGGT 2499
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2332 AGAATGGAAGAACTTTTAATTCAGAGGCAAAAAAGAATTGCGGAGAAGAGTTCTGGTGGT 2391
Query 2500 AGTGTATCAAGTTCTTTAGCGTCCAAGAAAACTCCTACTGTGACCAAGTCAGTGAAGAGC 2559
||||| |||||||| | ||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 2392 AGTGTGTCAAGTTCCTCAGCGTCCAAGAAAACTCCTCCTGCAACCAAAACAGTGAAGAGC 2451
Query 2560 TCGAT-AAAGAAT-GAGAAGACTCCTGAAGCCGCGCAGTCAAAGGCTAAGCCAGTACTGA 2617
|| || ||||| | |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2452 TC-ATCAAAGA-TCGAGAAGACCCCAGAAGCCGCGCAGTCAAAGGCTAAGCCAGTACTGA 2509
Query 2618 GAAGTTCCACCATTGAGCGCCTTGCTGTTGCTCGGACCGCTCCAAAGGAGCCACAGCAAA 2677
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2510 GAAGTTCCACCATTGAGCGCCTTGCTGTTGCTCGGACCGCTCCAAAGGAGCCACAACAAA 2569
Query 2678 AACCAGTAATCAAAAGAACATCAAAACCTTCAGGATACAAGACAGAGAAAGCTCAGGAAA 2737
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2570 AACCAGTAATCAAAAGAACTTCAAAACCTTCAGGAAACAAGACAGAGAAAGCTCAGGAAA 2629
Query 2738 AGAAATCGAGTAAAATAGGTCAATCAGATGCGAAAAGTGTGGAACTTTCTCGTGACCCGA 2797
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2630 AGAAATCGAGTAAAATAGGTCAATCTGATGCGAAAAGTCTGGAACTTTCTCGTGACCCGA 2689
Query 2798 GTCTCGAAATCAAGGAAACGGTGGTGGAAGATTCACATTCTTACTTGTCAGAGAAGCAAG 2857
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2690 GTCTCGAAATCAAGGAAACAGTGGTGGAAGATTCACAGTCTTACTTGTCTGAGAAGCAAG 2749
Query 2858 TTGATGCACTTCCTGCTGTTGCTTCTGTTGATGATTTCAAAGACATTAAAGAATTGCATA 2917
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2750 TTGATGCACTTCCTGCTGCTGCTTCTGTTGATGATTTCAAAGACATTAAAGAATTGCATA 2809
Query 2918 GCTTGCCATCAGAAGAAACGGCCAGAGTAAAGAACAGACCGAATGAAATCATAGCAGAGA 2977
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2810 GCTTGCCATCAGAAGAAACGGCCAGAGTAAACAACAGACCGAATGAAATCATAGCCGAGA 2869
Query 2978 AAGTACAAGATCAGACGAAGATCGATGATCAGGAAACAGTGAAGAATACATCTGTTTCTG 3037
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2870 AAGTACAAGATCAGACGAAGATCGATGATCAGGAAACAGTCAAGAAGACATCTGTTTCTG 2929
Query 3038 AAGATAAGCAAATCACCACGAAGCATTACTCAGAGGATGTTGGAGA-AGTCCAGGCTTCA 3096
| ||||||||||||||| | || ||||| ||||||||| | ||||| | || |||| |||
Sbjct 2930 AGGATAAGCAAATCACCGCAAACCATTATTCAGAGGATATCGGAGAGA-TCAAGGCATCA 2988
Query 3097 CAGGAAAAACCGGTGTCTCCAAAGAAGTCGGTGACTTTTTCAGAGACAAACATGGAGGAG 3156
||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2989 CAGGAAAAACCAGCGTCTCCAAAGAAGTCAGTGACTTTTTCAGAGACAAACATGGAAGAG 3048
Query 3157 AAGTATTATTTCTCACCAGCGGTCTCAGAGATTGACATCTCAACGCCACCTGCTACTGAA 3216
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 3049 AAGTATTATTTCTCACCAGCGGTCTCAGAGATTGACATCTCGACGCCACCGGCGACTGAA 3108
Query 3217 GCAGATCATTCGAGGAAGAAATGGAACAGTGAAGAGACGTCTCCCAAGGCAACGGCTAAA 3276
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3109 ACAGATCATTCCAGGAAGAAATGGAACAATGAAGAGACGTCTCCCAAGGCAACGGCTAAA 3168
Query 3277 GTCTTCAGGAAGCTTCTTATGTTCGGAAGGAAAAAGTAAAACCGA-CGTTGGAATTCTTC 3335
|| || |||||||||||||||||||||||||||||||||||| || | || |||||||||
Sbjct 3169 GTTTTGAGGAAGCTTCTTATGTTCGGAAGGAAAAAGTAAAACAGAAC-TTAGAATTCTTC 3227
Query 3336 TTCTCCGGCATCATCGAACCTTTGTTTTGAGACGACGTCATGTTGAGTTCAGTTAAAAAG 3395
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 3228 TTCTCTGGCATCATCGAACCTTTGTTTCGAGAGGACGTCATGTTGAGTTCAGTTAAAAAG 3287
Query 3396 CCTCTCTTATTCTTTAAATTTTTCCTTGTGTGATATTAAATACTGTTTTTCat-tttatt 3454
||||| ||||||||||||||||| |||||||||||| ||||||||||||| | ||| ||
Sbjct 3288 CCTCTTTTATTCTTTAAATTTTTTCTTGTGTGATATGAAATACTGTTTTTTTTGTTT-TT 3346
Query 3455 gttgttatcagtttgatttgt--ctgtttatattacatttgttgatgtgttgtttatAGC 3512
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 3347 -TTGTTATCAGTTTGATTTGTGTCTGTTTATATTACATT-GTTGATGTGTTGTTTATAGC 3404
Query 3513 ATTGAAAGTGGGCATTTGAGTGTGTATAAAAAATTGGTTTGGTGAGTT 3560
||||| ||||| ||||||||||| ||||||| |||||||| ||||||
Sbjct 3405 ATTGATAGTGGACATTTGAGTGT--ATAAAAA-TTGGTTTGATGAGTT 3449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136969205227
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5