BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27435.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945309 jgi|Araly1|945309|scaffold_701538.1 922 0.0
> Ahg945309 jgi|Araly1|945309|scaffold_701538.1
Length=562
Score = 922 bits (499), Expect = 0.0
Identities = 541/562 (96%), Gaps = 0/562 (0%)
Strand=Plus/Plus
Query 90 AGAGAGACTAAGGTGAATCCATGGCGTCCAAGATTGTCTCAGCCATAGTATTTGTGTTTA 149
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AGAGAGAGTAAGGTGAATCCATGGCGTCCAAGATTGTCTCAGCCATAGTCTTTGTGTTTA 60
Query 150 ACCTCATTGCCTTTGGTTTAGCCGTTGCTGCTGAACAAAGAAGAAGCACTGCAAGGGTTG 209
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACCTCATTGCCTTTGGCTTAGCCGTTGCTGCTGAACAAAGACGAAGCACTGCAAGGGTTG 120
Query 210 TGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGACTCGGACAGAGCTACAGGGT 269
|||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||
Sbjct 121 TGCAGGACACTGAGGTGCAATACAACTACTGTGTGTATGATTCAGACAGAGCCACAGGGT 180
Query 270 ATGGAGTTGGAGCCTTTTTGTTCTCAGTGGCTAGTCAAATCCTTATCATGCTCGTTAGCC 329
|||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 181 ATGGAGTTGGAGCCTTTTTGTTCTCAGTGGTTAGTCAATTCGTTATCATGCTCGTTAGCC 240
Query 330 GTTGCTTCTGTTGTGGAAAGCCTCTCAAGCCTGGCGGTTCACGCGCTCTTGCCCTCATTC 389
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GATGCTTCTGCTGTGGAAAGCCTCTCAAGCCTGGCGGTTCACGCGCTCTTGCCCTCGTTC 300
Query 390 TCTTCATTGTTAGCTGGATGTTCTTCTTGATAGCGGAGATATGTCTATTAGCTGGATCGG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTTCATTGTTAGCTGGATGTTCTTCTTGATAGCGGAGATATGTCTATTAGCTGGATCGG 360
Query 450 TAGAGAATGCATACCACACAAAGTACAGGACAATGTTCATGGACAATCCTCCTGATTGTC 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAGAGAATGCATACCACACAAAGTACAGGACAATGTTCATGGACAATCCTCCTGATTGTC 420
Query 510 AAACTCTACGTAAAGGCGTCTTTGCAGCAGGCGCCTCATTCGTCTTCTTCAACGCCATTG 569
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 421 AAACTCTACGTAAAGGCGTCTTCGCCGCCGGCGCCTCATTCGTCTTCTTCAACGCCATTG 480
Query 570 TCTCTCAGTTCTACTATTTCTTCTATTTCTCTGCTGCTGAGGCCTCTCTTTCACCTTACT 629
||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||
Sbjct 481 TCTCTCAGTTCTACTATTTCTTCTATTCCTCTGCTGCCGAGGTCTCCCTTTCACCTTACT 540
Query 630 AGAGGTTCTTAACCAACAAATA 651
||||||||||||||||||||||
Sbjct 541 AGAGGTTCTTAACCAACAAATA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5