BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27440.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492051 jgi|Araly1|492051|fgenesh2_kg.7__1484__AT4G27440.1 2405 0.0
Ahg495501 jgi|Araly1|495501|fgenesh2_kg.8__1317__AT5G54190.1 1133 0.0
Ahg359798 jgi|Araly1|359798|fgenesh1_pg.C_scaffold_1072000001 893 0.0
> Ahg492051 jgi|Araly1|492051|fgenesh2_kg.7__1484__AT4G27440.1
Length=1510
Score = 2405 bits (1302), Expect = 0.0
Identities = 1450/1519 (95%), Gaps = 20/1519 (1%)
Strand=Plus/Plus
Query 41 AAAATATCCACTACGATAGTTTTCTTCAGCAAT--C----AC-A-CTCTCTCTTTGTTCG 92
|||||||||||| |||||||||||||||||||| | | | |||||||| ||||||
Sbjct 1 AAAATATCCACTTCGATAGTTTTCTTCAGCAATCGCTTTTGCTACCTCTCTCTCTGTTCG 60
Query 93 AGTACCAACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTTCGCAA 152
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 61 AGTACCAACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGAAA 120
Query 153 AGATGCGAAGTTGAATGCTTCTTCATCATCTTTCAAGGACTCGAGTCTTTTTGGTGCCTC 212
||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 121 AGATGCGAAATTGAATGCTTCTTCATCGTCTTTCAAGGACTCTAGTCTATTTGGTGCCTC 180
Query 213 CATTACCGACCAAATCAAATCCGAACATGGATCTTCCTCGTTAAGATTCAAGAGAGAACA 272
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CATTACCGACCAAATCAAATCCGAACATGGATCTTCCTCGTTAAGATTCAAGAGTGAACA 240
Query 273 GAGCTTAAGGAATCTAGCAATTCGAGCCCAAACCGCTGCGACTTCAAGCCCTACAGTTAC 332
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 TAGCTTAAGGAGTCTAGCAATTCGAGCCCAAACCGCTGCGACTTCAAGCCCTACGGTTAC 300
Query 333 AAAATCCGTGGACGGCAAGAAAACGTTGAGGAAAGGAAATGTGGTGGTCACTGGAGCCTC 392
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 AAAATCCGTGGACGGCAAGAAAACGTTGAGGAAAGGAAATGTGGTGGTGACTGGAGCCTC 360
Query 393 GTCTGGGTTAGGTCTAGCCACGGCTAAAGCTCTAGCTGAGACAGGGAAATGGAACGTGAT 452
|||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||
Sbjct 361 GTCTGGATTAGGTCTAGCCACGGCTAAAGCTCTAGCCGAGACAGGTAAATGGCACGTGAT 420
Query 453 AATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCTGCTAAATCCGTAGGGATGCCTAA 512
||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 421 TATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCCGCTAAATCTGCAGGGATGCCTAA 480
Query 513 AGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAGCGTGAGACAGTTTGT 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 AGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAGCGTGAGACAGTTCGT 540
Query 573 TGATAATTTCAGGAGAACAGAGACGCCTCTCGATGTTTTGGTCTGCAATGCTGCGGTTTA 632
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 TGATAACTTCAGGAGAACAGAGATGCCTCTCGATGTTTTGGTCTGCAATGCTGCGGTTTA 600
Query 633 TTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGAGCTTAGTGTTGCGAC 692
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 TTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGAGCTTAGCGTTGCGAC 660
Query 693 GAACCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGACTTGAAGAAATCTGA 752
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAATCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGACTTGAAGAAATCTGA 720
Query 753 TTACCCTTCAAAGCGTCTCATCATCGTCGGATCCATTACCGGGAACACGAATACATTGGC 812
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 TTACCCTTCAAAGCGTCTCATCATCGTCGGGTCCATTACCGGGAACACGAATACATTGGC 780
Query 813 GGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTTAGCCGGCGGATTAAA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTTAGCCGGCGGATTAAA 840
Query 873 CGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGGTGCAAAGGCTTACAA 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGGTGCAAAGGCTTACAA 900
Query 933 AGACAGTAAAGTCTGCAATATGTTGACAATGCAAGAGTTTCACAGGCGTTTCCATGAAGA 992
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 901 AGACAGTAAAGTCTGCAACATGTTGACGATGCAAGAGTTTCACAGGCGTTACCATGAAGA 960
Query 993 AACTGGAGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCTCCACAGGTTTATTCCG 1052
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 961 AACTGGAGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCTCCACGGGTTTATTCCG 1020
Query 1053 AGAGCACATTCCTCTCTTCCGTGCCCTCTTCCCTCCCTTTCAGAAGTACATCACTAAAGG 1112
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGATCACATTCCGCTCTTCCGTGCCCTCTTCCCTCCCTTTCAGAAGTACATCACTAAAGG 1080
Query 1113 ATATGTCTCCGAAACAGAGTCAGGCAAAAGACTTGCTCAGGTGGTGAGTGATCCAAGCTT 1172
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1081 ATATGTCTCCGAGACAGAGTCAGGCAAAAGACTTGCTCAGGTGGTGAGTGATCCGAGCTT 1140
Query 1173 GACGAAATCAGGGGTTTATTGGAGCTGGAACAATGCTTCGGCTTCTTTTGAGAACCAGTT 1232
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1141 GACGAAATCAGGGGTTTATTGGAGCTGGAACAATGCTTCAGCATCTTTTGAGAACCAGTT 1200
Query 1233 ATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTGTGGGAGATCAGTGAGAAGCT 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTGTGGGAGATCAGTGAGAAGCT 1260
Query 1293 CGTGGGCTTGGCCTAATAAACTTGAAGTCTGTTAAATTTGATGACACCTCTCGGTACCAA 1352
|||||||||||||||||||||||||| |||||||| |||||||| |||| || |||||||
Sbjct 1261 CGTGGGCTTGGCCTAATAAACTTGAAATCTGTTAA-TTTGATGAGACCTTTCCGTACCAA 1319
Query 1353 TCGAAGAAATCTAGTGAATTTCCGGGATTTTTA--GATATCTGATTCTGTTGCGAAGttt 1410
|||| |||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1320 TCGACGAAACCTAGTGAATTTTCGGGATTTTTATAGATGTCTGATTCTGTTGCGAAGTTT 1379
Query 1411 ttttATCCTTATTAGTGTCTGTTGAGTGTAGATTGCTTGGCGAGTAGCCCACAATAAAGA 1470
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TTTT-TCCTTA---GTGTCTGTTGAGTGTAGATTGCTTGGCGAGTAGCCCACAATAAAGG 1435
Query 1471 AATAAAAAT-GGCGAATCTTTAGCTTTATTTACTCTGTTTTTCATCGAAACAGATTCAGT 1529
||||||| | || |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1436 AATAAAA-TCGGTGAATCTTTAGCTATATTTACTCTGTTTTTCATCGAAACAGAT-CAGT 1493
Query 1530 AATATATACTCTGTTTTTT 1548
|||||||||||||||||
Sbjct 1494 --TATATACTCTGTTTTTT 1510
> Ahg495501 jgi|Araly1|495501|fgenesh2_kg.8__1317__AT5G54190.1
Length=1397
Score = 1133 bits (613), Expect = 0.0
Identities = 1041/1244 (84%), Gaps = 43/1244 (3%)
Strand=Plus/Plus
Query 99 AACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTTCGCAAAGATGC 158
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 16 AACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGAAAAGATG- 74
Query 159 GAAG-TTGAATGCTTCTTCATCATCTTTCAAGGACTCGAGTCTTTTTGGTGCCTCCATTA 217
||| |||||||||||||||||||| ||||| || |||||||| ||||||| || | ||
Sbjct 75 GAAAATTGAATGCTTCTTCATCATCATTCAAAGAGTCGAGTCTGTTTGGTGTTTC-ACTA 133
Query 218 CCG-ACCAAATCAAATCCGAACATGGA-TCTTCCTCGTTAAGATTCAAGAGAGAACAGAG 275
|| | || | |||| | || | | | ||||| || || |||| |||||| ||||| ||
Sbjct 134 TCGGAGCATAGCAAAGCTGA-CTTTGTCTCTTCTTCATTGAGATGCAAGAGGGAACAAAG 192
Query 276 CTTAAGGAAT--CTA-GCAATT---CGAGCCCAAACCG-CTGCGACTTCAAGC-CC-TAC 326
||| |||||| | | |||||| ||||| ||| | | |||||||||| | || | |
Sbjct 193 CTTGAGGAATAACAAAGCAATTATTCGAGCTCAAGCAATC-GCGACTTCAA-CACCAT-C 249
Query 327 AGTTACAAAATC--CGTG-GACGGCAAGAAAACG-TTGAGGAAAGGAAATGTGGTGGTCA 382
|| |||||||| | | ||| |||||||||| || || |||||||| ||||| ||||
Sbjct 250 GGTCACAAAATCGTCCTTAGACCGCAAGAAAACCCTT-AGAAAAGGAAACGTGGTTGTCA 308
Query 383 CTGGAGCCTCGTCTGGGTTAGG-TCTAGCCACGGCTAAAG-C-TCTAGCTGAGACAGGGA 439
| ||||| || || |||||||| | |||| ||||| |||| | | |||| |||||||| |
Sbjct 309 CGGGAGCTTCTTCAGGGTTAGGGT-TAGCAACGGC-AAAGGCAT-TAGCCGAGACAGGTA 365
Query 440 AATGGAACGTGATAATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCTGCTAAATCCG 499
||||| |||||||||||||||||||||||||||| || || |||||||| ||| ||||||
Sbjct 366 AATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGCTCAATCCG 425
Query 500 -TAGGGATGCCTAAAGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAGC 558
| || |||||||| ||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 426 CT-GGCATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTAGCGTCTTTGGACAGC 484
Query 559 GTGAGACAGTTTGTTGATAATTTCAGGAGAACAGAGACGCCTCTCGATGTTTTGGTCTGC 618
||||| ||||| |||||||| |||||| || | |||| |||||||||||| |||||||||
Sbjct 485 GTGAGGCAGTTCGTTGATAACTTCAGGCGAGCCGAGATGCCTCTCGATGTGTTGGTCTGC 544
Query 619 AATGCTGCGGTTTATTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGAG 678
||||||||||||||| || |||||||| | ||||||| || ||||||||||||||||
Sbjct 545 AATGCTGCGGTTTATCAGCCAACAGCTAATCAACCTACTTTCACTGCTGAAGGGTTTGAG 604
Query 679 CTTAGTGTTGCGACGAACCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGAC 738
||||| |||| || ||||||||||| || |||||||| |||| |||||| ||||||||
Sbjct 605 CTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGATTGATGAC 664
Query 739 TTGAAGAAATCTGATTACCCTTCAAAGCGTCTCATCATCGTCGGATCCATTACCGGGAAC 798
|| ||||| || ||||| || ||||| ||||||||||| || |||||||| ||||| ||
Sbjct 665 TTAAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAACCGGAAAT 724
Query 799 ACGAATACATTGGCGGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTTA 858
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 725 ACTAATACATTGGCGGGTAATGTACCTCCGAAGGCGAATCTTGGTGATTTGAGGGGATTA 784
Query 859 GCCGGCGGATTAAACGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGGT 918
|| || || || ||||| |||||||||| || ||||| |||||||||||||||| ||
Sbjct 785 GCAGGTGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTTCGTTGGG 844
Query 919 GCAAAGGCTTACAAAGACAGTAAAGTCTGCAATATGTTGACAATGCAAGAGTTTCACAGG 978
|||||||| || ||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 845 GCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAAGAGTTTCATAGG 904
Query 979 CGTTTCCATGAAGAAACTGG-AGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCTC 1037
|||||||||||||| || || | | ||||| ||||| || ||||||||||| ||||| |
Sbjct 905 CGTTTCCATGAAGACACCGGCA-TAACTTTTGCTTCCCTGTACCCCGGTTGTATCGCGAC 963
Query 1038 CACAGGTTTATTCCGAGAGCACATTCCTCTCTTCCGTGCCCTCTTCCCTCCCTTTC-AGA 1096
|| ||||| ||| ||||||| ||||||||||||||| ||||||||||||| |||| |||
Sbjct 964 AACTGGTTTGTTCAGAGAGCATATTCCTCTCTTCCGTACCCTCTTCCCTCC-TTTCCAGA 1022
Query 1097 AGTACATCACTAAAGGATATGTCTCCGAAACAGAGTCAGGCAAAAGACTTGCTCAGGTGG 1156
|||||||||| ||||| || |||||||| |||||| | || |||||||||||||||||||
Sbjct 1023 AGTACATCACAAAAGGTTACGTCTCCGAGACAGAGGCTGGGAAAAGACTTGCTCAGGTGG 1082
Query 1157 TGAGTGATCCAAGCTTGACGAAATCAGGG-GTTTATTGGAGCTGGAACAATG-CTTCGGC 1214
|| |||| |||||||||||||| || ||| || ||||||||||||||||| | | |||||
Sbjct 1083 TGGGTGACCCAAGCTTGACGAAGTC-GGGAGTGTATTGGAGCTGGAACAA-GACCTCGGC 1140
Query 1215 TTCTTTTGAGAACCAGTTATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTGTG 1274
||| |||||||| ||| | || ||||||| || || || ||||||||||||| ||| ||
Sbjct 1141 TTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGTTTG 1200
Query 1275 GGA-GATCAGTGAGAAGCTCGTGGGCTTGGCCTAATAAACTTGA 1317
||| | |||| ||||||||||| |||||||||||| ||| ||||
Sbjct 1201 GGAAG-TCAGCGAGAAGCTCGTAGGCTTGGCCTAA-AAA-TTGA 1241
> Ahg359798 jgi|Araly1|359798|fgenesh1_pg.C_scaffold_1072000001
Length=1008
Score = 893 bits (483), Expect = 0.0
Identities = 822/983 (84%), Gaps = 34/983 (3%)
Strand=Plus/Plus
Query 263 AGAGAGAACAGAGCTTAAGGAAT-CT--AGC-A--ATTCGAGCCCAAACCGCT-GCGACT 315
|||| ||||| ||||| |||||| | ||| | |||||||| | || | | ||||||
Sbjct 38 AGAGGGAACAAAGCTTGAGGAATAATAAAGCAATTATTCGAGCTC-AAGCAATCGCGACT 96
Query 316 TCAAGC-CCTA-CAGTTACAAAA---TCCGTGGACGGCAAGAAAA-CGTTGAGGAAAGGA 369
|||| | || | | || |||||| ||| | ||| ||||||||| | || || ||||||
Sbjct 97 TCAA-CACC-ATCGGTCACAAAATCGTCCTTAGACCGCAAGAAAACCCTT-AGAAAAGGA 153
Query 370 AATGTGGTGGTCACTGGAGCCTCGTCTGGGTTA-GGTCTAGCCACGGCTAAA-GC-TCTA 426
|| ||||| ||||| ||||| || || |||||| ||| |||| ||||| ||| || | ||
Sbjct 154 AACGTGGTTGTCACGGGAGCTTCTTCAGGGTTAGGGT-TAGCAACGGC-AAAGGCAT-TA 210
Query 427 GCTGAGACAGGGAAATGGAACGTGATAATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGA 486
|| |||||||| |||||| |||||||||||||||||||||||||||| || || ||||||
Sbjct 211 GCCGAGACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGA 270
Query 487 GCTGCTAAATCCG-TAGGGATGCCTAAAGACAGCTACACAGTGATGCATTTAGACTTAGC 545
|| ||| |||||| | || |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 271 GCCGCTCAATCCGCT-GGCATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTAGC 329
Query 546 CTCGTTGGACAGCGTGAGACAGTTTGTTGATAATTTCAGGAGAACAGAGACGCCTCTCGA 605
|| |||||||||||||| ||||| |||||||| |||||| || | |||| |||||||||
Sbjct 330 GTCTTTGGACAGCGTGAGGCAGTTCGTTGATAACTTCAGGCGAGCCGAGATGCCTCTCGA 389
Query 606 TGTTTTGGTCTGCAATGCTGCGGTTTATTTCCCGACAGCTAAAGAGCCTACTTACAGTGC 665
||| |||||||||||||||||||||||| || |||||||| | ||||||| || |||
Sbjct 390 TGTGTTGGTCTGCAATGCTGCGGTTTATCAGCCAACAGCTAATCAACCTACTTTCACTGC 449
Query 666 TGAAGGGTTTGAGCTTAGTGTTGCGACGAACCATTTGGGACATTTTCTTCTCGCAAGGTT 725
|||||||||||||||||| |||| || ||||||||||| || |||||||| |||| ||
Sbjct 450 TGAAGGGTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATT 509
Query 726 GTTGCTTGATGACTTGAAGAAATCTGATTACCCTTCAAAGCGTCTCATCATCGTCGGATC 785
|||| |||||||||| ||||| || ||||| || ||||| ||||||||||| || |||||
Sbjct 510 GTTGATTGATGACTTAAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATC 569
Query 786 CATTACCGGGAACACGAATACATTGGCGGGTAATGTACCACCGAAGGCGAATCTCGGTGA 845
||| ||||| || || ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 570 CATAACCGGAAATACTAATACATTGGCGGGTAATGTACCTCCGAAGGCGAATCTTGGTGA 629
Query 846 TTTGAGGGGTTTAGCCGGCGGATTAAACGGTTTAAACAGCTCAGCTATGATTGATGGAGG 905
||||||||| ||||| || || || ||||| |||||||||| || ||||| ||||||||
Sbjct 630 TTTGAGGGGATTAGCAGGTGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGG 689
Query 906 AGATTTCGACGGTGCAAAGGCTTACAAAGACAGTAAAGTCTGCAATATGTTGACAATGCA 965
|||||||| || |||||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct 690 AGATTTCGTTGGGGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCA 749
Query 966 AGAGTTTCACAGGCGTTTCCATGAAGAAACTGG-AGTCACTTTCGCTTCGCTTTACCCCG 1024
||||| ||| ||||||||||||||||| || || | | ||||| ||||| || |||||||
Sbjct 750 AGAGTATCATAGGCGTTTCCATGAAGACACCGGCA-TAACTTTTGCTTCCCTGTACCCCG 808
Query 1025 GTTGCATCGCCTCCACAGGTTTATTCCGAGAGCACATTCCTCTCTTCCGTGCCCTCTTCC 1084
|||| ||||| | || ||||| ||| |||| || || |||||||||||| |||||||||
Sbjct 809 GTTGTATCGCGACAACTGGTTTGTTCAGAGAACATATACCTCTCTTCCGTACCCTCTTCC 868
Query 1085 CTCCCTTTC-AGAAGTACATCACTAAAGGATATGTCTCCGAAACAGAGTCAGGCAAAAGA 1143
|||| |||| ||||||||||||| ||||| || |||||||| |||||| | || ||||||
Sbjct 869 CTCC-TTTCCAGAAGTACATCACAAAAGGTTACGTCTCCGAGACAGAGGCTGGGAAAAGA 927
Query 1144 CTTGCTCAGGTGGTGAGTGATCCAAGCTTGACGAAATCAGGG-GTTTATTGGAGCTGGAA 1202
||||||||||||||| |||| |||||||||||||| || ||| || ||||||||||||||
Sbjct 928 CTTGCTCAGGTGGTGGGTGACCCAAGCTTGACGAAGTC-GGGAGTGTATTGGAGCTGGAA 986
Query 1203 C-AATG-CTTCGGCTTCTTTTGA 1223
| || | | |||||||| |||||
Sbjct 987 CCAA-GACCTCGGCTTCATTTGA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5