BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27450.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945307 jgi|Araly1|945307|scaffold_701536.1 1310 0.0
> Ahg945307 jgi|Araly1|945307|scaffold_701536.1
Length=793
Score = 1310 bits (709), Expect = 0.0
Identities = 749/769 (97%), Gaps = 0/769 (0%)
Strand=Plus/Plus
Query 195 AGGAGAGAAATGTTGGCTATCTTCCACGAGGCGTTTGCTCATCCGCCGGAGGAACTCAAC 254
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 12 AGGAGAGAAATGTTGGCTATCTTTCACGAGGCGTTTGCTCATCCGCCGGAGGAACTCAAC 71
Query 255 AGTCCGGCATCTGAGAAATGCTCTAAACAACCAAAACTTCCAGAAGAAACCCTAAATGAT 314
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 72 AGTCCGGCATCTGAGAAATACTCTAAACAACCAAAACTTCCAGAGGAAACCCTAAACGAT 131
Query 315 TTCTTATTACGTTACCCTCTCAACACTTTCTCCATGTCTTTCGGACAAGCTGCTGTTCTT 374
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 132 TTCTTATTACGTTACCCTCTCAACACTTTCTCCATGTCTTTCGGACAAGCAGCTGTTCTT 191
Query 375 GCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGGTTGTTTTGTGGATTTGAT 434
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 192 GCTTACGTTCGTCCCTCTGCTTCTTTCTCCATCCACCAGAGGTTGTTTTGTGGATTTGAT 251
Query 435 GACATCTACTGTCTCTTCTTTGGGAGCTTGAACAATCTGTGTCAGCTAAACAAACAGTAT 494
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 252 GACATCTACTGTCTGTTCTTTGGGAGCTTGAACAATCTGTGTCAGCTAAACAAACAATAT 311
Query 495 GGTCTCACCAAGACAACAAACGAGGCCATGTTTGTGATCGAAGCTTATAGGACTCTTAGA 554
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 312 GGTCTGACCAAGACAACAAATGAGGCCATGTTTGTGATCGAAGCTTATAGGACTCTTAGA 371
Query 555 GACAGAGGTCCTTATCCAGCTGATCAGGTCGTCAAAGACTTAGACGGTAGCTTTTCCTTT 614
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 372 GACAGAGGTCCTTATCCAGCTGATCAGGTCGTCAAAGACTTAGACGGCAGCTTTTCCTTT 431
Query 615 GTGGTTTATGATAGCAAAGCCGGCTCTGTCTTCACTGCTCTGGGATCTGATGGAGGGGTG 674
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 432 GTGGTTTATGATAGCAAAGCCGGTTCTGTCTTCACGGCTCTGGGATCTGATGGAGGGGTG 491
Query 675 AAGCTATACTGGGGCATAGCTGCTGATGGATCTGTTGTTATATCAGATGATTTGGATGTT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AAGCTATACTGGGGCATAGCTGCTGATGGATCTGTTGTTATATCAGATGATTTGGATGTT 551
Query 735 ATCAAAGAGGGTTGTGCTAAATCTTTTGCTCCATTTCCTACAGGGTGTATGTTCCATAGT 794
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 552 ATTAAAGAGGGTTGTGCTAAATCTTTTGCTCCATTCCCTACAGGGTGTATGTTCCATAGT 611
Query 795 GAAGGAGGGTTAATGAGCTTTGAGCATCCAATGAACAAGATCAAGGCGATGCCGAGGGTA 854
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 612 GAAGGAGGGTTAATGAGCTTTGAGCATCCGATGAATAAGATCAAGGCGATGCCGAGAGTG 671
Query 855 GACAGTGAAGGAGTTCTATGCGGTGCCAACTTCAAGGTGGATGTGTACAATCGTGTTAAC 914
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GACAGTGAGGGAGTTCTATGCGGTGCCAACTTCAAGGTGGATGTGTACAATCGTGTTAAC 731
Query 915 AGTATCCCTCGTCGAGGAAGTGAAGCCAATTGGTCTCTCTGAATACTTT 963
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AGTATCCCTCGTCGAGGAAGTGAAGCCAATTGGTCTCTCTGAATACTTT 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5