BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27460.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328949 jgi|Araly1|328949|fgenesh1_pm.C_scaffold_7001176 1648 0.0
Ahg495451 jgi|Araly1|495451|fgenesh2_kg.8__1267__AT5G53750.1 305 4e-82
> Ahg328949 jgi|Araly1|328949|fgenesh1_pm.C_scaffold_7001176
Length=1185
Score = 1648 bits (892), Expect = 0.0
Identities = 1092/1188 (92%), Gaps = 15/1188 (1%)
Strand=Plus/Plus
Query 30 ATGGCACTGTCCCTTCTCTCCTACAACGTCTCCGACCTCTGTCTCGGCAAACCTCCTCTT 89
||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGGCACTGTCTCTTCTCTCCTACGATGTCTCCGACCTCTGTCTCGGCAAGCCTCCACTC 60
Query 90 CGTTGTCTTTCCTCCTCTTCCTCCTCCGTATCCGACGCCATCGCTGCCCTCAAATCCTCT 149
|||| ||| ||| ||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 61 CGTTCTCTCTCCGCCTCTTCCTCCTCCGTATCAGACGCCATCACTGCCCTGAAATCCTCT 120
Query 150 GAAGACACTTTCCTCTCCGTCTGGAATTGCAATCACGACGATGACAATAACACAGAGTGC 209
||||||||||||||||| |||||||| ||||||||| |||||||| || |||||| |||
Sbjct 121 GAAGACACTTTCCTCTCTGTCTGGAACTGCAATCACAACGATGACGTTATCACAGAATGC 180
Query 210 GAGTGCTTGGGGAAAATATCAATGGCTGACGTCATCTGCCACTTGTCCAAAGACCATGAC 269
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 181 GAGTGCTTGGGGAAAATATCAATGGCTGACATCATCTGCCACTTGTCCAAAGACCACGAC 240
Query 270 CACAGTCTCTGTGCCTTAAACTCATCCGTCTCTGTTCTTCTCCCCAAAACTCGTTCCATT 329
|||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACACTCTCTCTGCCTTAAACGCATCCGTCTCTGTTCTTCTCCCCAAAACTCGTTCCATT 300
Query 330 GTCCTCCATGTTCAACCATCCTGCAGCTTAATAGAAGCCATTGATCTGATAATCAAAGGA 389
||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||
Sbjct 301 GTCCTCCATGTTCAACCCTCGTGCAGCTTAATCGAAGCCATTGATCTGATAATCCAAGGA 360
Query 390 GCACAGAATCTGATTGTCCCGATACATACAAAGCCCTACACTAAGAAAAAGCAGCACAAC 449
||||||||| |||||||||| ||||| |||||||||| ||||||||||| |||||| ||
Sbjct 361 GCACAGAATTTGATTGTCCCAATACAGACAAAGCCCTTCACTAAGAAAAGGCAGCATAAG 420
Query 450 GACAACGTTTCGGTCACCACCACCACCCACTCGAACGGACAACGATTCTGCTGGATCACA 509
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GACAACGTGTCGGTCACCACCACCACCCACTCGAACGGACGACGATTCTGCTGGATCACA 480
Query 510 CAAGAAGACATCATTCAGTTTCTCCTCGGATTCATCGCCGCATTCTCTCCTTTGCCAGCG 569
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 481 CAAGAAGACATCATTCAGTTTCTCCTCGGATCCATCGCCGCATTCTCTCCTTTGCCGGCC 540
Query 570 ATGTCCCTCTCTGATCTCGGTGTCATCAACAGCACACACACAGTTG-TTGCGGTCGATTA 628
||||| |||||||| |||||| ||||||||||||||||||| | | |||||||||||||
Sbjct 541 ATGTCACTCTCTGACCTCGGTATCATCAACAGCACACACAC-GATCCTTGCGGTCGATTA 599
Query 629 CCACTCCTCAGCGTCCGCAGTTGTCTCTGCCGTATCCAACGCTCTTGCCGTCCAAACCTC 688
||||||||| || |||||||||||||| ||| ||||||||||||| ||||||||||| ||
Sbjct 600 CCACTCCTCCGCCTCCGCAGTTGTCTCCGCCATATCCAACGCTCTCGCCGTCCAAACTTC 659
Query 689 TGTCGCAGTGGTCGACGGTGAGGGAGATGA---CCCTTTTACGTCTTTGATCGGCGAAAT 745
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 660 TGTCGCAGTGGTCGACGGTGAGGGAGATGATGACCCTTTTACGTATTTGATCGGTGAAAT 719
Query 746 ATCCCCGATGACATTAACTTGCTGCGACGAGACAGCAGCTGCGGCGGTGGCGACGCTCTC 805
|||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 ATCCCCAATGACACTAACTTGCTGCGACGAGACAGCAGCTGCGGCGGTGGCGATGCTCTC 779
Query 806 CGCTGGAGATCTGATGGCGTACATAGACGGAGCAAATCCTCCGGAGAGTCTTGTTCAGAT 865
|| ||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 780 TGCAGGAGAACTGGTGGCGTACATAGACGGAGCAAATCCGCCGGAGAGTTTTGTTCAGAA 839
Query 866 CGTTAGGAACCGTTTGGAGGATAAAGGATTGATTGGTTTGATGTCGCTTTTCGATTCTCT 925
||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||
Sbjct 840 CGTCAGGAACCGTTTGGAGGACAAAGGATTGATGGGTTTGCTCTCGCTTTTCGATTCTCT 899
Query 926 CTCATCTTATTCGACGTCGTCGGGTTATTCGTCGGAGGAAGAAGCTCCAGTGAGAACGAC 985
|||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 900 CTCACCTTATTCGACGTCGTCGGGTTATTCCTCGGAGGAAGAAGCTCCAGCGAGGACGAC 959
Query 986 GTCG---TATGG-ACGGTCGATGAGTAGCTCAGCAAGAATGGCAAGGAAGTCGGAGGCGA 1041
|||| ||||| | |||||||||| |||||||||||| |||| |||||||||||||| |
Sbjct 960 GTCGACGTATGGGA-GGTCGATGAGCAGCTCAGCAAGAGTGGCGAGGAAGTCGGAGGCCA 1018
Query 1042 TAGTGTGTAATCCAAAGAGCTCGTTAATGGCAGTGATGATCCAAGCGGTTGCTCATCGAG 1101
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1019 TAGTGTGTAACCCGAAGAGCTCGTTAATGGCGGTGATGATCCAAGCGGTTGCTCATCGAG 1078
Query 1102 TGAACTACGCGTGGGTGGTTGAGAA-GGATGGTTGTTTCGTTGGCATGGTTACTTTTGTT 1160
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 1079 TGAACTACGCGTGGGTGGTTGA-AACGGACGGTTGTTTCGTTGGCATGGTTACTTTTGTT 1137
Query 1161 GATATCTTAAAAGTTTTTAGGAAATTTTTGGAGAAT---GACATGTGA 1205
||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1138 GATATCTTAAAAGTTTTTAGGAATTTTTTGGAGAATAATGACATGTGA 1185
> Ahg495451 jgi|Araly1|495451|fgenesh2_kg.8__1267__AT5G53750.1
Length=1396
Score = 305 bits (165), Expect = 4e-82
Identities = 910/1251 (73%), Gaps = 125/1251 (10%)
Strand=Plus/Plus
Query 30 ATGGCACTGTCCCTTCTCTCCT-ACAACGTCTCCGACCTCTGTCTCGGCAAACCTCCTCT 88
|||||| | ||||| | | || |||| || || ||||||||| |||| || || ||| |
Sbjct 44 ATGGCATTAACCCTTTTGT-CTCACAAAGTATCTGACCTCTGTATCGGTAAGCCACCT-T 101
Query 89 T-CGTTGTCTTTCC-TCCTCTTCCTCCTCCGTATCCGACGCCATCGCTGCCCTCAAATCC 146
| ||||||| ||| || || | || |||| || ||||||||||| || |||||||||
Sbjct 102 TATGTTGTCTCTCCGTCGTC-ACAGCCACCGTCTCTGACGCCATCGCCGCTCTCAAATCC 160
Query 147 TCTGAAG-ACACTTTCCTCTCCGTCTGGAATTGCAATCACGA--CGATGAC--A--ATAA 199
||||| | || | | |||| |||| |||| || |||||||| || || | ||||
Sbjct 161 TCTGATGAAC-CATACCTCACCGTATGGAGCTGTAATCACGATGAGAAAACAGAGGATAA 219
Query 200 -CACAGAGTGCGAGTGCTTGGGGAAAATATCAATGGCTGACGTCATCTGCCACTTGTCCA 258
| | |||| ||||| ||||| || || | |||||||| || ||||| || | || |
Sbjct 220 TGATA-AGTGTGAGTGTTTGGGTAAGATCTGTATGGCTGATGTAATCTGTTACCTATCGA 278
Query 259 AA---GAC--C-ATG----ACCACAGTCTCTGTGCCTTAAACTCATCCGTCTCTGTTCTT 308
|| ||| | ||| | | || || ||| || || ||| ||||||||||||
Sbjct 279 AATTCGACAACAATGTTTTGTCTCTTTC-CTCTGCTTTCGACGAATCTGTCTCTGTTCTT 337
Query 309 CTCCCCAAAACTCGTTC-CATTGTCCTCCATGTTCAACCATCCTGCAGCTTAATAGAAGC 367
|| |||||| || |||| | | ||| ||||||||||| | || |||| || || |||||
Sbjct 338 CTTCCCAAATCTTGTTCTC-TCGTCGTCCATGTTCAATCTTCTTGCAATTTGATTGAAGC 396
Query 368 CATTGATCTGATAATCAAAGGAGCACAGAATCTGATTGTCCCGATACATAC-AAAGCCCT 426
|||||||||||||||||||||||||||||||||||||| ||||| || || ||| | |
Sbjct 397 TATTGATCTGATAATCAAAGGAGCACAGAATCTGATTGTTCCGATTCAGACGAAATCAAT 456
Query 427 ACACTAAGA-AA-A-AGCAGCACAA-C----GACAA----CGTT-TCGGT-CAC-CACCA 471
||| |||| || | | || || || | ||||| ||| ||| | | | |||||
Sbjct 457 -CACAAAGAGAAGACAACAACAAAAACTTTTGACAAGAAACGTCGTCGTTTCCCTCACCA 515
Query 472 -C-CA-C--C--CA-CTC----GAACGGACAACGATTCTGCTGGATCACACAAGAAGACA 519
| || | | || | | |||| | | || |||||||||||||||||||||||| |
Sbjct 516 ACACAACTTCAACAACCCATAAGAACAGCCGACAATTCTGCTGGATCACACAAGAAGATA 575
Query 520 TCATTCAGTTTC-TCCTCGGATTC-ATC-GCCGCATTCTCTCCTTTGCCAG-CGATGTCC 575
| || | | ||| | |||| |||| || || | |||||||| || || | || | ||
Sbjct 576 TAATAC-GATTCCTTCTCG-ATTCCATTAGC-GTTTTCTCTCCATTACC-GTCGCTTTCT 631
Query 576 CTCTCTGATCTCGGTGTCATCAACAGCACACACAC-AGTTGTTGCGGTCGATTACCACTC 634
|||| ||||| || || ||||| || |||||||| | | | || || ||||| ||||
Sbjct 632 ATCTCCGATCTTGGAGTTATCAATAGTACACACACTA-TCCTCGCCGTTGATTATTACTC 690
Query 635 CTCAGC-G-T-CCGCAGTTGTCTCTGCCGTATC-CAACGCT--CTTGCCGTCCAAAC-CT 687
|||||| | | |||| || || | || | || | ||| |||| | | || ||
Sbjct 691 CTCAGCTGCTTCCGCCGTC-TC-CA-CCATCTCTCGT-GCTATCTTG--GAC-AATGTCT 743
Query 688 CTGTCGCAGTGGTCGAC---GG-TGAGGG-A-GATGACCCTTTTACGTCTTTGATCGGCG 741
||||||| ||||| || || || | | || || || | || | ||||||| || |
Sbjct 744 CTGTCGCGGTGGTTGATAAAGGATGTGATCAAGAAGATCCATGTATGGCTTTGATAGGTG 803
Query 742 AAATATCCCCGATGACATTAACTTGCTGCGACGAGACAGCAG-CTGCGGCGGTGGCGACG 800
| || || ||||||||| | |||| ||||| || || || | | || ||||| || ||
Sbjct 804 AGATTTCACCGATGACACTCGCTTGTTGCGATGAAACCGCTGTC-GCAGCGGTTGCTACA 862
Query 801 CTCTCCGCTGGAGATCTGATGGCGTACATAGACGG-AGCAAATCCTCCGGAGAGTCTTGT 859
||||| ||||||||||| ||| |||| || ||||| || ||| || |||||||| ||
Sbjct 863 CTCTCTGCTGGAGATCTAATGTCGTATATCGACGGTAGTGG-TCCGCCCGAGAGTCTAGT 921
Query 860 TC-AGATCGTTAGGAACCGTTTGGAGGATAAAGG-ATTGATTGGTTTGATGTCGCTT-TT 916
| || | |||||||| |||||||| |||||||| || | |||| ||||| || || ||
Sbjct 922 TGGAGTT-GTTAGGAATCGTTTGGAAGATAAAGGGATGG-TTGGATTGATCTCACTCATT 979
Query 917 CGATTCTCTCTCATCTTATTCGACGTCGTCGGGTTATTCGTCGGAGGAAGAAGCTCC--- 973
|| ||| | | || | | | ||||| |||| ||||||||| |||||| ||||
Sbjct 980 -GAATCT-T-TG-TCGT-T--GTCGTCG--GGGTC-TTCGTCGGATGAAGAATCTCCGGC 1029
Query 974 ----AGT--GAGAACGACGTC---GTATGG-ACGGTCGATGAGTAGCTCAGCAAGAATGG 1023
|| ||||| |||||| |||||| | ||||| | |||||| | || || |||
Sbjct 1030 GGGGAGGACGAGAATGACGTCTTCGTATGGGA-GGTCGGTTAGTAGCGCGGCGAGGATGT 1088
Query 1024 CAAGGAAGTCGGAGGCGATAGTGTGTAATCCAAAGAGCTCGTTAATGGCAGTGATGATCC 1083
| ||||| |||| ||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 1089 CGAGGAAATCGGTGGCGATAGTGTGTAATCGGAAGAGTTCGTTAATGGCGGTGATGATAC 1148
Query 1084 AAGCGGTTGCTCATCGAGTGAACTACGCGTGGGTGGTTGA-GAAGGATGGTTGTTTCG-T 1141
|||| |||||||| |||||| || | ||||||| |||| |||| |||||||||| | |
Sbjct 1149 AAGCTATTGCTCATAGAGTGAGTTATGTGTGGGTGATTGATGAAG-ATGGTTGTTT-GAT 1206
Query 1142 TGGCATGGTTACTTTTGTTGATATCTTAAAAGTTTTTAGGAAATTTTTGGA 1192
||| |||||||||||||||||||| || ||| |||||||| ||||||||||
Sbjct 1207 TGGTATGGTTACTTTTGTTGATATTTTGAAACTTTTTAGGGAATTTTTGGA 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5