BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27470.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492048 jgi|Araly1|492048|fgenesh2_kg.7__1481__AT4G27470.1 1334 0.0
> Ahg492048 jgi|Araly1|492048|fgenesh2_kg.7__1481__AT4G27470.1
Length=1027
Score = 1334 bits (722), Expect = 0.0
Identities = 844/902 (94%), Gaps = 11/902 (1%)
Strand=Plus/Plus
Query 6 CATCTCCGTCGTTTGTCTTTAAAACCTTTTGCCATTACCATCTTCGCACGTTGAATATAC 65
|||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1 CATCACCGTCGTTTGTCTTTAAAACCTTTTGCGATTACCATCATCGCACGTTGAATATAC 60
Query 66 GTCGACTTTAAACATCTTCCAATCTCTGAAAGCCCCTCTCTTTTCTCCATTTCGTGCTTC 125
||||| ||| |||||||||||||||||||||| ||||| || ||| | |||| |||||
Sbjct 61 GTCGAGTTT-AACATCTTCCAATCTCTGAAAG-CCCTC-CTCCTCT-C--TTCGAGCTTC 114
Query 126 ATCAT-ATTCGTCGTCG-CTTCGGGTCTTACCTCTCATGGAAGGGAACTTCTTCATCAGG 183
||||| | ||||| ||| | |||| |||||||||||||||||||||||||||| ||||||
Sbjct 115 ATCATCA-TCGTC-TCGTCGTCGGATCTTACCTCTCATGGAAGGGAACTTCTTTATCAGG 172
Query 184 TCTGATGCTCAACGAGCACATGACAATGGCTTCATAGCCAAACAAAAACCTAATCTCACC 243
||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| |
Sbjct 173 TCTGATGCTCAACGAGCACATGACAATGGTTTCACAGTCAAACAAAAACCTAATCTCATC 232
Query 244 ACGGCTCCAACAGCAGGTCAAGCTAATGAAAGTGGCTGTTTTGACTGCAACATCTGTTTA 303
||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 233 ACGGCTCCAACGGGAGGTCAAGCTAATGAAAGTGGCTGTTTTGATTGCAACATCTGTCTA 292
Query 304 GACACAGCCCATGATCCGGTGGTCACTCTCTGCGGGCACCTTTTCTGCTGGCCTTGCATT 363
|| ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct 293 GATACAGCCCATGATCCGGTTGTCACTCTCTGTGGACACCTTTTCTGTTGGCCTTGCATT 352
Query 364 TACAAGTGGTTACATGTTCAGTTATCTTCTGTCTCCGTTGATCAGCACCAGAACAATTGC 423
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 353 TACCAGTGGTTACATGTTCAGTTATCTTCTGTCTCCATTGATCAGCACCAGAACAACTGC 412
Query 424 CCTGTTTGTAAATCCAACATTACTATCACCTCTTTGGTTCCTCTCTATGGAAGAGGCATG 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CCTGTCTGTAAATCCAACATTACTATCACCTCTTTGGTTCCTCTCTATGGAAGAGGCATG 472
Query 484 TCTTCGCCTTCTTCCACGTTTGGCTCCAAGAAACAAGACGCACTGTCCACTGACATACCC 543
||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 473 TCTTCGCCTTCTTCCACGTTTGGCTCCAAGAAACAAGACGCACAGTCCACGGATATACCC 532
Query 544 CGCAGACCTGCTCCATCAGCCTTACGCAATCCGATTACCTCAGCATCATCTCTGAACCCA 603
|||||||| ||||||||| ||||| |||||| || |||||||| |||||||||||||||
Sbjct 533 CGCAGACCCGCTCCATCAACCTTAAACAATCCAATCACCTCAGCGTCATCTCTGAACCCA 592
Query 604 AGCTTGCAACATCAAACTCTGTCTCCTTCATTTCATAATCATCAGTATTCCCCTCGTGGC 663
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 593 AGCTTGCAACATCAAACTCTGTCTCCATCATTTCATAATCATCAGTATTCCCCTCGTGGC 652
Query 664 TTCACCACAACCGAATCAACCGACCTTGCCAATGCTGTAATGATGAGTTTCCTCTACCCT 723
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTCACCACTACCGAATCAACCGACCTTGCCAATGCTGTAATGATGAGTTTCCTCTACCCG 712
Query 724 GTGATTGGAATGTTTGGAGACCTGGTCTACACCAGGATATTCGGGACCTTCACAAACACA 783
||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 713 GTGATTGGAATGTTTGGGGACATGGTCTACACAAGGATATTCGGGACCTTCACAAACACA 772
Query 784 ATAGCTCAGCCTTACCAAAGCCAGAGGATGATGCAGCGTGAGAAGTCTCTTAATCGGGTA 843
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 773 ATAGCTCAGCCTTACCAAAGCCAGAGGATGATGCAGCGCGAGAAGTCTCTTAACCGGGTA 832
Query 844 TCGATATTCTTCCTTTGTTGCATCATCCTTTGCCTCCTtctcttctagctctctctctct 903
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 833 TCCATATTCTTCCTTTGTTGCATCATCCTTTGCCTCCTTCTCTTCTAGCTCCCTCTCT-T 891
Query 904 ct 905
||
Sbjct 892 CT 893
Score = 219 bits (118), Expect = 5e-56
Identities = 145/158 (92%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 945 tctctctctctctctctctctTCGTGTATAGTACGTGATGTACATAGGCTGTAAAACTCG 1004
||||| ||| ||| |||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 871 TCTCT-TCTAGCTCCCTCTCTTCTTGTATAGTTTGTGATGTAAATAGGCTGTAAAACTCG 929
Query 1005 AATTTACTGTGGTATAACCACTACTGCAGACACCGTTGTTCCGAGTTAGGTCTCAAATTG 1064
|| | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 930 AAGTAACTGTGGTATAACCACTACTGCAGACACCATTGTTCCGAGTCAGGTCTCAAATTG 989
Query 1065 CAGGCCAATATCTTGTTGTGTATTACAAAGATATCGAT 1102
||||||||||||||||||||||||||| ||||||||||
Sbjct 990 CAGGCCAATATCTTGTTGTGTATTACATAGATATCGAT 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5