BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27480.1
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492046 jgi|Araly1|492046|fgenesh2_kg.7__1479__AT4G27480.2 2287 0.0
> Ahg492046 jgi|Araly1|492046|fgenesh2_kg.7__1479__AT4G27480.2
Length=1540
Score = 2287 bits (1238), Expect = 0.0
Identities = 1427/1514 (94%), Gaps = 30/1514 (2%)
Strand=Plus/Plus
Query 34 GTAATCCGACACTTTAATTAAACAAATCTTCGTTTCAGACAAAGACAACCTCGTGGATTG 93
||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 52 GTAATCCGACATTTTAATT-AATAAATCTTCGTTTCAGACAAAGACAACCTCGTGGATAG 110
Query 94 TGTTAAGAACTGCCCGGATCTTTAAACATTCTCACGTCATCTCCATGAAATTTTAAGAA- 152
||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 111 TGTTAAGAACTGCCCGGATCTTTAAACATTCTCGCGTCATATCCATGAAA-ATTAAGAAT 169
Query 153 C----CAGGCGCTACCTCGATTTGTGAAGATCTTTCTTCTCTGATGCGTCGACAATATCA 208
| |||||| ||||| ||||||||||||||| |||||||||||| || |||| | ||
Sbjct 170 CAGGTTAGGCGCAACCTCAATTTGTGAAGATCTTGCTTCTCTGATGCATCTACAAGACCA 229
Query 209 AAGTGTTGGCTTCTTTCGTTGACATAACATTGGTTTTTGAGATCGATCACATATGAGAAG 268
|||| |||| | ||| | | || | || | | | || || |||||||||
Sbjct 230 AAGTTTTGG---C-TTC--T----T----TT-G---TT-A-A-C-ATAAC-TATGAGAAG 266
Query 269 GCTCTTTAATGGCGTCCTCAAACTCAGAGAAGAGATGGATATTCCCTCTAGCAATGGCTT 328
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 267 GTTCTTTAATGGCGTCCTCGAACTCAGAGAAGAGATGGATTTTCCCTCTAGCAATGGCTT 326
Query 329 CTCTCATGTTCATATTCCTTATAGCTGCATCCTTCAACATGGGTCTCCTCTCTTCTGTCC 388
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 327 CTCTCATGTTCATATTCCTTATAGCTGCATCCTTCAACATGGGCCTCCTCTCTTCTGTTC 386
Query 389 GTTCTATTAACTCACTCATCTTCTCCTACAATCTATCGACCACCAACGAGACACGAGTCG 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 387 GTTCTATTAACTCACTCATCTTCTCCTACAATCTATCGACCACGAACGAGACACGAGCCG 446
Query 449 AATTTGCAGAGTCAAAGATCAATCAGTCCTCGCATCCTCCTCCAGTACAGCCTAGTCTTC 508
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 447 AATTCGCAGAGTCAAAGATCAATCAGTCCTCTCATCCTCCTCCAGTACAGCCTAGTCCTC 506
Query 509 CTCGCTTTGGTTATCTAGTTTCAGGGTCAAGAGGTGACTTAGAGAGTCTGTGGAGAGTGT 568
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 507 CTCGCTTTGCTTATCTAGTTTCAGGGTCAAGAGGTGACTTAGAGAGTCTATGGAGAGTGT 566
Query 569 TACGAACATTATACCATCCTAGGAATCAGTACGTTGTTCATCTTGATCTCGAGTCTCCTG 628
|| ||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 567 TAAGAACATTGTACCATCCGAGGAATCAATATGTTGTTCATCTTGATCTCGAGTCTCCTG 626
Query 629 CTGAAGAGAGGCTTGAGCTGGCTAAACGTGTGAGCCAAGATCCTGTTTTTAGCGATGTTG 688
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 627 CTGAAGAGAGGCTTGAGCTGGCTAAACGTGTGAGTGAAGATCCTGTTTTTAGTGATGTTG 686
Query 689 GAAATGTTCACATGATCACAAAGGCTAACCTTGTTACGTATCGAGGACCCACAATGGTGG 748
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 687 GGAATGTTCACATGATCACAAAGGCTAACCTCGTTACGTATCGAGGACCCACTATGGTGG 746
Query 749 CTAACACGCTCCACGCTTGCGCTATTCTCTTGAAGCAGAGTAAAGAATGGGATTGGTTCA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CTAACACGCTCCACGCTTGCGCTATTCTCTTGAAGCAGAGTAAAGAATGGGATTGGTTCA 806
Query 809 TCAATCTCAGTGCCTCGGATTATCCTCTAGTCACTCAAGATGATCTGATTGATACATTCT 868
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 807 TCAATCTCAGTGCCTCGGATTATCCTCTAGTCACTCAAGATGATCTCATTGATACATTCT 866
Query 869 CGGGACTGGACCGGAACCTCAACTTTATCGACCACAGTAGCAAACTAGGCTGGAAAGAAG 928
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CGGGATTGGACCGGAACCTCAACTTTATCGACCACAGTAGCAAACTAGGCTGGAAAGAAG 926
Query 929 AAAAACGAGCAAAGCCGCTGATCATAGACCCGGGGCTTTACTCCACAAAGAAGTCAGATG 988
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 927 ATAAACGAGCAAAGCCTCTGATCATAGACCCGGGGCTTTACTCCACAAAAAAGTCAGATG 986
Query 989 TCTTCTGGGTTACACCTCGCAGAACAATGCCAACTGCATTCAAACTATTTACCGGTTCCG 1048
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 987 TCTTCTGGGTTACACCTCGAAGAACCATGCCAACTGCATTCAAACTATTTACCGGTTCCG 1046
Query 1049 CTTGGATGGTCTTATCTCGGTCGTTCGTAGAATATTGCATTTGGGGATGGGACAATCTTC 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 CTTGGATGGTCTTATCTCGGTCGTTCGTAGAATATTGCATTTGGGGATGGGACAATCTTC 1106
Query 1109 CACGGACTCTTCTAATGTATTACACCAATTTCCTCTCTACACCGGAAGGATATTTCCATA 1168
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 CACGAACTCTTCTAATGTATTACACCAATTTCCTCTCTACACCGGAAGGATATTTCCATA 1166
Query 1169 CTGTCATCTGCAACGCTCCAGAGTACTCTTCCACTGTGCTGAACCACGACCTGCATTTCA 1228
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1167 CTGTCATCTGCAACGCTCCAGAGTACTCTTCCACCGTGCTGAACCACGACCTGCATTTCA 1226
Query 1229 TCTCATGGGACCGCCCTCCTAAACAGCATCCTCGGGCGCTCACCATCAACGATACAGAGA 1288
|||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 1227 TCTCCTGGGACCGCCCTCCTAAACAGCATCCTCGGACGCTCAACATCAACGATATAGAGA 1286
Query 1289 GGATGATTGCAAGTGGAAGTGCGTTTTCCCGCAAGTTCAGACACAATGATCCTGCCTTGG 1348
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1287 AGATGATTGCAAGTGGAAGTGCGTTTGCCCGCAAGTTCAGACACAATGATCCTGCCTTGG 1346
Query 1349 ATAAGATCGATAAAGAGCTGCTCGGTAGAGGTAACGGAAACTTCACGCCTGGTGGTTGGT 1408
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1347 ATAAGATCGATAAAGAGCTGCTCGGTAGAGGTAACGGAAACTTTACGCCTGGTGGTTGGT 1406
Query 1409 GTGCAGGGGAACCAAAATGCTCGAGGGTTGGTGATCCGTCGAAGATCAAGCCCGGTCCTG 1468
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1407 GTGCAGGGGAACCAAAATGCTCGAGGGTTGGTGATCCATCAAAGATCAAGCCCGGTCCTG 1466
Query 1469 GAGCTAACAGGCTTCGTGTGCTTGTTAGCAGACTTGTTTTGACATCTAAATTGACTCAAA 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 GAGCTAACAGGCTTCGTGTGCTTGTTAGCAGACTTGTTTTGACATCTAAATTGACTCAAA 1526
Query 1529 GGCAATGTAGATAG 1542
||||||||||||||
Sbjct 1527 GGCAATGTAGATAG 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5