BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27490.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492045 jgi|Araly1|492045|fgenesh2_kg.7__1478__AT4G27490.1 1509 0.0
> Ahg492045 jgi|Araly1|492045|fgenesh2_kg.7__1478__AT4G27490.1
Length=971
Score = 1509 bits (817), Expect = 0.0
Identities = 924/974 (95%), Gaps = 14/974 (1%)
Strand=Plus/Plus
Query 1 GCCGCGTTCTCTGTCTCTCAAACCCTCAGGCTCAGAACAATGGCAGCTAAACCTGGAGCC 60
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1 GCCGCGTTCTCTGTCTCTCAAACCCTCAGGCACAGAACAATGGCAGCAAAACCTGGAGCC 60
Query 61 GCAACTCCAACGTATTCACCTAAAA-TCGTCGGAAGAAGTCGGCTTCCTATATTCAAAGA 119
|||||||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||
Sbjct 61 GCAACTCCAACGTATTCACC-AAAACTCGTCGGAAGAACTCGGCTTCCTATTTTCAAAGA 119
Query 120 TTCCGACCTCGATTGGTCTCGTCCTGATGGCCGTGGCTTCCACCAATGCCGACCCGCATT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 120 TTCCGACCTCGATTGGTCTCGTCCTGATGGCCGTGGCTTCCACCAATGCCGACCTGCCTT 179
Query 180 ACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACAC 239
Query 240 TAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 TAAAGTCATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTTTAGTGA 299
Query 300 TGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCA 359
||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||| ||
Sbjct 300 TGTTGGTAGATTGAATTGCAATGTTAGCTATACAACTTTTGCCTCCCCTACTCTTGGTCA 359
Query 360 GGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAAT 419
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 360 GGGAACTGATCACAAAGAGTATTCATCGATGCTTCACAAAGCATTGGAAGGCGTAATAAT 419
Query 420 GATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGG 479
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TATGGAGACATTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTGCTTGAATCTGGAGG 479
Query 480 AAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTAT 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGTGACCTCTCTGTTGTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTAT 539
Query 540 GATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 GATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATTGA 599
Query 600 CCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATC 659
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CCCGGTTACAGAAGAGGAAGGATGTGAAGATGGAAGCTTTATGATGACGTGCATGCCATC 659
Query 660 TCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGA 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACGCCTAATATCAACGA 719
Query 720 GGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGT-C 778
||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| | |
Sbjct 720 GGCAATGCAGCTTTGCTTGGATGCTTGTTCTAAACTTGGAGAGATCATGCGGGATT-TAC 778
Query 779 TGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAAT-AA----CTATGATTTTGGA 833
|||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||
Sbjct 779 TGAAACAGGCTGCCTCAGCTTCCGAAGAATGAACATAAATCAAGAAACTATGATTTTGGA 838
Query 834 TTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCT 893
|||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 839 TTGTAGCTCAGACTTGTTATGAAGCCGGTTT-AGCTGTTAGAGGTAAACGGATTTAGTCT 897
Query 894 AAACCTGTGTG-T--AGTTTAAACCGATGTATGTTTTCACAT-AAGATTTGATGGAACTA 949
||||||||||| | |||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct 898 AAACCTGTGTGGTGTAGTTGAAACCGATGTATCTTTTCACATTAAGATTTGATGGAACTA 957
Query 950 GATCTTTAGCTATG 963
||||||||| ||||
Sbjct 958 GATCTTTAGTTATG 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5