BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27500.1
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328945 jgi|Araly1|328945|fgenesh1_pm.C_scaffold_7001172 2806 0.0
> Ahg328945 jgi|Araly1|328945|fgenesh1_pm.C_scaffold_7001172
Length=1854
Score = 2806 bits (1519), Expect = 0.0
Identities = 1759/1868 (94%), Gaps = 43/1868 (2%)
Strand=Plus/Plus
Query 188 ATGGGTGTTGAAGTTGTAAACTCTGGTGGATTTGAGGTTGCTCCGGCTCCTTTCGAGGGG 247
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCGTTGAAGTTGTAAAGTCTGGTGGATTTGAGGTTGCTCCGGCTCCTTTCGAGGGG 60
Query 248 AAACCTGAGAAGAACGGGAAGCTGGACCAAGGAAAAGGAGATGATGCCCCCATCAATTTT 307
|||||| | |||| ||| | || ||||||||||||| | | | | ||||| |||
Sbjct 61 AAACCT--G-AGAA---GAA-C-GG----AGGAAAAGGAGATAAAGTCTCTATCAAGTTT 108
Query 308 GGTTCAGTCGGTGAGCTACCAAAGAATGCCGAAGAGAATAAT-AACAAAGTGGTCAACTC 366
|||||| |||||||| ||||||||| |||||||||| | || ||||||||| | |||||
Sbjct 109 GGTTCACACGGTGAGCCACCAAAGAAAGCCGAAGAGACT-ATCAACAAAGTGTTGAACTC 167
Query 367 TGATGCACCCAAAAATGCAGCAGAAGAGTGGCCTGTGGCTAAGCAGATCCACTCTTTCTA 426
||||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 168 TGATGCACCAAAAAATGCTGCAGAAGAGTGGCCTGCGGCCAAGCAGATCCACTCTTTCTA 227
Query 427 CCTTGTTAAATACCGTTCTTACGCTGACCCCAAAATTAAAGCTAAGCTTGATCTAGCTGA 486
| |||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 228 CTTTGTTAAATACCGTTCTTACGCTGACCCGAAAATGAAAGCTAAGCTTGACCTAGCTGA 287
Query 487 TAAAGAGCTTGAAAAGTTGAACAAAGCTCGGACTGGAGTTTTGGACAAGTTGAGAGCTAA 546
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 288 TAAAGAGCTTGAAAAGTTGAACAAAGCTCGGAGTGGAGTTTTGGACAAGTTGAGAGCTAA 347
Query 547 GAGGGCCGAGAGATCAGAGTTATTTGATCTGCTGGACCCGTTGAAGTCAGAGCGTAAGGG 606
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 348 GAGGGCCGAGAGATCAGAGTTATTTGATCTTTTGGACCCGTTGAAGTCAGAGCGTAAGGG 407
Query 607 ATTCAACACAATGTTTGATGAGAAAAGAAAGGAAATGGAACCATTGCAGCAAGCACTGGG 666
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 408 ATTCAACACAATGTTTGATGAGAAAAGAAAGGAAATGGAGCCATTGCAGCAAGCACTGGG 467
Query 667 AAAGTTAAGGAGCAATGATGGTGGGAGTGCTCGTGGCCCTGCTATCTGTTCCTCCGAGGA 726
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 468 AAAGCTAAGGAGCAATGATGGTGGGAGTGCTCGTGGCCCTGCTATCTGTTCGTCCGAGGA 527
Query 727 AGAGCTGAATAGTATGATATACAGCTATCAGTATCGGATTCAACATGAAAGCATTCCGTT 786
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 528 AGAGCTCAATAGTATGATATACAGCTATCAATATCGGATTCAACATGAAAGCATTCCGTT 587
Query 787 AACCGAGGAGAAGCAGATTCTCAAAGAGATCAGGCTGCTTGAAGGGACAAGAGATAAGGT 846
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 588 AACCGAGGAGAAGCAGATTCTCAAAGAGATCAGGCTGCTTGAAGGTACAAGAGATAAGGT 647
Query 847 CATTGCTAATGCCGCTATGAGAGCCAAAATCAAAGAATCTATGGGTCAGAAGGATGATAT 906
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CATTGCTAATGCGGCAATGAGAGCCAAAATCAAAGAATCTATGGGTCAGAAGGATGATAT 707
Query 907 CCAAGGTCAAGTTAAGTTAATGGGTGCTGGTTTGGATGGAGTGAAAAAGGAGAGGCAAGC 966
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 708 CCAAGGTCAAGTTAAGTTAATGGGTGCTGGTTTGGATGGAGTGAAAAAAGAGAGACAAGC 767
Query 967 AATTTCAGCAAGGATTAATGAGCTGAGTGAGAAGTTGAAAGCTACCAAAGATGAGATTAC 1026
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 768 AATTTCAGCAAGGATTAATGAGCTGAGTGAGAAGTTGAAAGCTACGAAAGATGAGATT-C 826
Query 1027 -GGTACTGGAAAATGAGCTCAAGACTGTGAGCGAAAAGAGAGACAAAGCCTATTCAAACA 1085
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AGGTACTGGAGAATGAGCTCAAGACTGTGAGCGAAAAGAGAGACAAAGCCTATTCAAACA 886
Query 1086 TTCATGACCTCAGGAGGCAACGCGATGAGACGAATTCCGAGTATTACCAAAACCGTACTG 1145
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TTCATGACCTCAGGAAGCAACGCGATGAGACGAATTCCGAGTATTACCAAAACCGTACTA 946
Query 1146 TGTTGAACAAAGCTAGAGACTTGGCTGCACAAAAGAACATAAGCGAGCTTGAGGCGCTAG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 947 TGTTGAACAAAGCTAGAGACTTGGCTGCACAAAAGAACATAAGCGAGCTTGAGGCACTCT 1006
Query 1206 CCAATGCTGAGGTTGAGAAATTTATATCCCTTTGGTGCAGTAAGAAGAATTTCAGAGAAG 1265
||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1007 CCACTGCCGAGGTTGAGAAATTTATTTCCCTTTGGTGCAGTAAGAAGAATTTCAGAGAAG 1066
Query 1266 ATTATGAGAAGAGAATCTTGCAATCACTTGATTCTAGGCAGCTGAGCCGAGATGGACGGA 1325
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1067 ATTATGAGAAGAGAATCTTGCAATCACTTGATAGTAGGCAGCTGAGCCGAGATGGACGGA 1126
Query 1326 TGAGGAACCCCGATGAGAAGCCTCTGATTGCTCCAGAGGCAGCACCATCAAAGGCAACGC 1385
|||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1127 TGAGGAACCCGGAAGAGAAGCCTCTGATTGCTCCAGAGGCACCACCATCAAAGGCAACGC 1186
Query 1386 CTTCTGAAACCGAGGTTGTCCCTAAAGCTAAGGCAAAGCCGCAGCCAAAGGAGGAACCAG 1445
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1187 CTTCTGAAACCGAGGCTGTCCCTAAAGCTAAGGCAAAGCCGCAACCAAAGGAGGAACCAG 1246
Query 1446 TTTCTGCACCTAAACCAGATGCTACTGTTGCTCAGAATACTGAGAAAGCTAAAGATGCAG 1505
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TCTCTGCACCTAAACCAGATGCTACTGTTGCTCAGAATACTGAGAAAGCTAAAGATGCAG 1306
Query 1506 TAAAAGTAAAGAATGTTGC---tgatgatgatgatgatgaAGTATATGGTCTTGGAAAGC 1562
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1307 TAAAAGTAAAGAATGTTGCGAATGAAGATGATGATGATGAAGTATATGGTCTTGGAAAGC 1366
Query 1563 CGCAGAAGGAAGAAAAGCCGGTTGATGCAGCTACGGCGAAGGAAATGAGAAAGCAAGAGG 1622
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1367 CGCAGAAGGAAGAAAAACCGGTTGATGCAGCTACGGCAAAGGAAATGAGAAAGCAAGAGG 1426
Query 1623 AGATTGCTAAAGCCAAGCAAGCCATGGAAAGGAAGAAGAAGCTGGCagagaaagctgctg 1682
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1427 AGATTGCTAAAGCCAAGCAAGCCATGGAAAGGAAGAAGAAGCTGGCGGAGAAAGCTGCTG 1486
Query 1683 ctaaagctgctataagagctcaaaaggaagctgagaagaaag--aa-aa-g--a--a--- 1731
|||||||||||||||||||||||||||||||||||||||||| || || | | |
Sbjct 1487 CTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAGAAGAAAGAAAAGAAGGAAATTACCT 1546
Query 1732 -----------g--gagcaagagaagaaggccaagaagaaaaCCGGAGGCAACACAGAAA 1778
| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1547 TTTCTTTTTTTGTTGAGCAAGAGAAGAAAGCCAAGAAGAAGACCGGAGGCAACACAGAAA 1606
Query 1779 CCGAGACTGAGGAAGTTCCAGAAGCTTCTGAGGAGGAGATTGAAGCTCCGGTGCAGGAGG 1838
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 CCGAGGCTGAGGAAGTTCCAGAAGCTTCTGAGGAGGAGATTGAAGCTCCGGTGCAGGAGG 1666
Query 1839 AGAAACCGCAGAAGGAAAAAGTCTTCAAGGAGAAACCAATAAGGAACAGGACCCGCGGTA 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AGAAACCGCAGAAGGAAAAAGTCTTCAAGGAGAAACCAATAAGGAACAGGACCCGCGGTA 1726
Query 1899 GGGGACCAGAAACGATCCCAAGAGCGATCCTTAAGCGTAAGAAGTCGACTAATTACTGGG 1958
| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1727 GAGGACCAGAAACTCTCCCAAGAGTGATCCTTAAGCGTAAGAAGTCGACTAATTACTGGG 1786
Query 1959 TTTATGCTGCTCCAGCGGCTCTGGTGGTACTGTTGCTTCTTGTCTTGGGTTACTACTACG 2018
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1787 TTTATGCTGCTCCAGCGGCTTTGGTGGTACTGTTGCTTCTTGTCTTGGGTTACTACTACG 1846
Query 2019 TTCTCTAG 2026
||||||||
Sbjct 1847 TTCTCTAG 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88026556195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5