BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27520.1
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945300 jgi|Araly1|945300|scaffold_701529.1 1430 0.0
> Ahg945300 jgi|Araly1|945300|scaffold_701529.1
Length=1051
Score = 1430 bits (774), Expect = 0.0
Identities = 995/1094 (91%), Gaps = 46/1094 (4%)
Strand=Plus/Plus
Query 67 TCTCGCAGCTTTTGAAAAACATGACCTTTCTAAAAATGAAAAGCCTTTCTTTCTTCTTCA 126
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCACAGCTTTTGAAAACCATGACCTTTCTAAAAATGAAAAGCCTTTCTTTCTTCTTCA 60
Query 127 CCATCCTCCTCTCTCTCTCGACCCTCTTCACCATCTCCAACGCACGGAAGTTTAATGTCG 186
|||||||||||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct 61 CCATCCTCCTCTCTCTTTCTACGTTCTTCACCATCTCCGACGCACGGAAGTTTAATGTCG 120
Query 187 GAGGCAGTGGCGCGTGGGTTACAAACCCACCTGAAAACTACGAATCTTGGTCTGGCAA-A 245
||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| || |
Sbjct 121 GAGGCAGCGGCGCGTGGGTTCCAAACCCACCTGAAAATTACGAATCTTGGTCTGG-AAGA 179
Query 246 AACCGTTTCCTTGTTCACGACACTCTCTATTTTAGCTACGCTAAGGGAGCTGACTCGGTG 305
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 AACCGTTTCCTTGTTCACGACACACTCTATTTTAGCTACGCTAAGGGAGCTGACTCGGTG 239
Query 306 CTAGAGGTGAACAAGGCTGATTACGACGCTTGTAATACAAAGAATCCGATCAAAAGAGTG 365
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 GTAGAGGTAAACAAGGCTGATTACGACGCTTGTAATTCAAAGAATCCGATCAAAAGAGTG 299
Query 366 GACGATGGAGATTCTGAGATCTCTCTTGATCGTTATGGTCCGTTTTACTTCATCAGTGGC 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GACGATGGAGATTCTGAGATCTCTCTTGATCGTTATGGTCCGTTTTACTTCATCAGTGGC 359
Query 426 AATGAAGATAACTGTAAGAAGGGTCAAAAGCTTAATGTCGTTGTCATATCTGCTAGGATT 485
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 360 AATGAAGATAACTGTAAGAAGGGTCAAAAGCTTGCTGTTGTTGTCATATCTGCTAGGGTT 419
Query 486 CCATCAACGGCTCAGTCTCCTCACGCCGCTGCACCGGGAAGCTCTACGCCGGGATCAATG 545
||||||||||||||| |||||||||| |||||||||||||| | | | | |
Sbjct 420 CCATCAACGGCTCAGCCTCCTCACGCTGCTGCACCGGGAAG-T-T-C-------T-A--- 465
Query 546 ACTCCGCCGGGAGGAGCCCACTCGCCTAAATCTTCCTCCCCTGTTTCTCCGACGACTTCT 605
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 -C---GCCGGGAGGAGCCCACTCGCCTAAATCTTCCTCCCCTGTTTCTCCGACGACTTCT 521
Query 606 CCTCCGGGATCGACTACTCCGCCTGGAGGAGCTCACTCGCCTAAATCTTCATCAGCTGTC 665
|| |||||||| | | || ||| | | || | | | || ||| | ||
Sbjct 522 CCACCGGGATCAA-TGG-CC-CCTA-A--A--TC-CG-G--T---TCC-CAT--G--GT- 560
Query 666 TCTCCGGCGACTTCTCCTCCAGGATCAATGGCGCCTAAATCCGGCTCC-CCTGTTTCTCC 724
|||||| |||||| || || ||||||||||| |||||||||| | | |||||||||||
Sbjct 561 TCTCCGATGACTTCACCGCCGGGATCAATGGCTCCTAAATCCGA-TACTCCTGTTTCTCC 619
Query 725 GACGACTTCACCACCGGCACCACCTAAATCCACGTCCCCTGTTTCCCCATCCTCTGCTCC 784
| ||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 620 GGCGACTTCTCCCCCGGCTCCACCTAAATCCACTTCCCCTGTTTCCCCATCCTCTGCTCC 679
Query 785 GATGACTTCACCGCCGGCACCAATGGCACCTAAATCATCTTCAACTATTCCTCCGTCTTC 844
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 680 GATGACTTCACCGCCGGCACCAATGGCACCTAAATCATCTTCCACTGTTCCTCCGTCTTC 739
Query 845 TGCTCCGATGACTTCACCACCTGGATCAATGGCACCTAAATCTTCATCCCCTGTTTCAAA 904
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 740 TGCTCCGATGACTTCACCACCTGGACCAATGGCACCTAAATCTTCATCCCCTGTTTCAAA 799
Query 905 CTCACCCACCGTTTCTCCATCGTT-GGCTCCGGGAGGCTCTACTTCTTCTTCACCGTCAG 963
||||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 800 CTCACCCGCCGTTTCTCCATC-TTCGGCTCCGGGAGGCTCTGCTTCTTCTTCACCGTCAG 858
Query 964 ATTCTCCGTCAGGCTCGGCGATGGGTCCTTCAGGAGATGGTCCATCAGCCGCTGGTGATA 1023
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 859 ATTCTCCGTCAGGCTCGGCGATGGGTCCTTCGGGAGATGGTCCATCAGCCTCCGGTGATA 918
Query 1024 TCTCTACGCCGGCTGGAGCTCCAGGGCAGAAAAAATCGTCGGCGAATGGTATGACCGTTA 1083
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 919 TCACTACGCCGGCGGGAGCTCCAGGGCAGAAAAAATCGTCGGCGAATGGTATGGCCGTTA 978
Query 1084 TGTCGATTACTACGGTTTTAAGTTTGGTTTTGACCATCTTTCTGTCAGCTTAAGAACACT 1143
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 979 TGTCTATTACTACGGTTTTAAGTTTGGTTTTGACCATCTTTATGTCAGCTTAAGAACACT 1038
Query 1144 TGTGAGACTTGTTT 1157
|| |||||||||||
Sbjct 1039 TG-GAGACTTGTTT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5