BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27530.1

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492040 jgi|Araly1|492040|fgenesh2_kg.7__1473__AT4G27530.1         545    9e-155


> Ahg492040 jgi|Araly1|492040|fgenesh2_kg.7__1473__AT4G27530.1
Length=456

 Score =  545 bits (295),  Expect = 9e-155
 Identities = 374/412 (91%), Gaps = 6/412 (1%)
 Strand=Plus/Plus

Query  1    GTAGAAAATGGCGGCTATGTTTTTAGCAAAGAGAGGAGCCATAAACATACATAGAGCTTC  60
            |||| |||||||||||||| |||||||||||||||||| |||| ||||| | ||||||||
Sbjct  1    GTAGGAAATGGCGGCTATGCTTTTAGCAAAGAGAGGAGGCATACACATATACAGAGCTTC  60

Query  61   TTCATTACACATAGATTACAACAACAGTTCTCGATCTGTTGTTGATGGAGTCATTACTAT  120
            ||||||||| |  |||||||||||| || |||||||||||| | ||||||||||||| ||
Sbjct  61   TTCATTACAGAGGGATTACAACAACGGTGCTCGATCTGTTGCTCATGGAGTCATTACCAT  120

Query  121  CACTAACTCTCGTTACTTCGCATCCCACGGGAACAAC---GGAGAGAAGTCAGAGGAAGA  177
            |||||||||||||||||||  ||||||| ||||||||   |||||||||||| | |||||
Sbjct  121  CACTAACTCTCGTTACTTCATATCCCACAGGAACAACGGAGGAGAGAAGTCAAAAGAAGA  180

Query  178  GGCGATGGGGACAACTACAGATGGTAAAGCTCCGAATGTGACATTGGGTCATGCGGCGGA  237
            ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||
Sbjct  181  GGCGATGGGGACAACTACAGATGGTAAGGCTCCGAATGTGACGTTGAGTCATGCGGCTGA  240

Query  238  TACAGCCAAAGAAGGATTGAAACGAGCCACCGATGCAGCCATCAAGAAGA-G--TGGAGA  294
            |||||||||||||||||||||||||||||||||||||||||||||||||| |  || |||
Sbjct  241  TACAGCCAAAGAAGGATTGAAACGAGCCACCGATGCAGCCATCAAGAAGAAGAATGAAGA  300

Query  295  TGTGGGCAAGCCGAAGAGTGTAGAGAATGATGAAGGAGATGATCAGGAGGATGTAGCAGT  354
            ||   ||||||| ||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct  301  TGCCAGCAAGCCCAAGAGTGTAGAGAATGACGAAGGAGATGATCAGGAGAATGTAGCTGT  360

Query  355  GGGTGATGATGGAACTGTCAAAGGCCAAAATCAGTCAGCAGGATGAGAATAT  406
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  361  GGGTGATGATGGAACTGCCAAAGGCCAAAATCAGTCAGCAGGATGAGAATAT  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19497505979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5