BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27540.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492039 jgi|Araly1|492039|fgenesh2_kg.7__1472__AT4G27540.1 1471 0.0
Ahg888924 jgi|Araly1|888924|Al_scaffold_0007_910 723 0.0
Ahg336550 jgi|Araly1|336550|fgenesh1_pg.C_scaffold_1003115 723 0.0
Ahg327582 jgi|Araly1|327582|fgenesh1_pm.C_scaffold_6002802 643 0.0
Ahg321420 jgi|Araly1|321420|fgenesh1_pm.C_scaffold_4001477 643 0.0
Ahg905956 jgi|Araly1|905956|Al_scaffold_0003_3084 640 0.0
Ahg327202 jgi|Araly1|327202|fgenesh1_pm.C_scaffold_6002422 638 0.0
> Ahg492039 jgi|Araly1|492039|fgenesh2_kg.7__1472__AT4G27540.1
Length=934
Score = 1471 bits (796), Expect = 0.0
Identities = 861/892 (97%), Gaps = 5/892 (1%)
Strand=Plus/Plus
Query 77 ACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTC 136
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ACAAGAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTC 105
Query 137 GAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 GAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCT 165
Query 197 GCAGCTGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCA 256
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 GCAGCCGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCG 225
Query 257 TCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTTCTCTCTTATCTCGACTC 316
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 226 TCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTTCTCTCTTGTCTCGACTC 285
Query 317 GTCACTGTCTCTTCTCTTCTTACTATTAACCCTTTCTCTAAGCTCTCCGCCGATGATTTT 376
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 286 GTCACTGTCTCTTCTCTTCTTACCATTAACCCTTTCTCCAAGCTCTCCGCCGATGATTTT 345
Query 377 TCCGGAGATACGACACCGTGGACCACCGGTTTCATTGGCAATTGTGACTCTTATTCGTTC 436
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 346 TCCGGAGATACGCCACCGTGGACCACCGGTTTCTTTGGCAATTGTGACTCTTATTCGTTC 405
Query 437 CCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAGAATATCAAACGATTCGCTAGG 496
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 406 CCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAGAATATCAAACGGTTCGCTAGG 465
Query 497 AATTACGCTACGTTGTTCATCGTCTTCTTTGCTTGTGCACTATATCAGATGCCACTTGCA 556
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 466 AATTACGCTACGTTATTCATCGTCTTCTTCGCTTGTGCACTATATCAGATGCCACTTGCA 525
Query 557 TTGGTGGGATTGTTAGGAAGCTTAGCTCTTTGGGAGCTATTCAAATACTGCAGTGATA-A 615
|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 526 TTGGTGGGATTGTTAGCAAGCTTAGCCCTTTGGGAGCTGTTCAAATACTGCAGTGACAGA 585
Query 616 GTGGAAATTTGATCGTCACCCTTCCATGAGGAAACTCTCGATTGGTATTGGACAATGCGC 675
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 586 -TGGAAATTTGATCGTCACCCTTCCATGAGGAAATTCTCGATTGGTATTGGACAGTGCGT 644
Query 676 AACAGCGGTTCTTCTAACGTTTTTGAATGTCCAAATGGCTCTTTTCTCTGCTCTTGCGAT 735
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AACAGCGGTTCTTCTGACGTTTTTGAATGTCCAAATGGCTCTTTTCTCTGCTCTTGCGAT 704
Query 736 CAGTTATTCAGTTATGATATTGCATGCTGGGTTCAGAAAGCTCACGCCATCCAAGAAACC 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CAGTTATTCAGTTATGATATTGCATGCTGGGTTCAGAAAGCTCACGCCATCCAAGAAACC 764
Query 796 AACTCGAGGAAGATAAACCGCATCCACACGAGTTTTGGATTTTGAATGAGAGATTCATCA 855
| ||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct 765 ACCTCGAGGGAGATAAACCGCATCCACAAGAGTTTTGGATTCTGAATGAGA--TTCATCA 822
Query 856 GCAGTTTTGGAAATCAAGAAATGTAGTGTTTGGTAACTCAAACTCAGAGAGAGGCAGACA 915
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 823 GCAGTTTTGGAAATCAAGAATTGTAGTGTTTGGTAACTCAAACTCAGAGAGAGGCAGACA 882
Query 916 ACAATAGCAGT-TAGATGGTAGATTAAGAAAGTGTGAATGTTAGACAACATC 966
|||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 883 ACAATAGCAGCCTAGATGGTAGATTAAGAAAGTGTGAATGTTAGACATCATC 934
> Ahg888924 jgi|Araly1|888924|Al_scaffold_0007_910
Length=579
Score = 723 bits (391), Expect = 0.0
Identities = 514/570 (90%), Gaps = 21/570 (4%)
Strand=Plus/Plus
Query 63 GGATAATCACGGCG---ACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 119
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 GGATAATCGCGGCGACAACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 85
Query 120 TCCCCGATCCTGCTTTCGAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATC 179
||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 86 TCCTCGATCCTGCTTTCGAATCTTGGCTCCGAGATTCCAGCTACCTCGAGCTCCTCGATC 145
Query 180 ACCGCACCTCCGCCGCTGCAGCTGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 239
|||||||||| || || || || |||||||||||||||||||||||||||||||||||||
Sbjct 146 ACCGCACCTCTGCTGCAGCCGCCGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 205
Query 240 CCGCAACTTCTGCGGCATCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTT 299
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 206 CCGCAACTTCTGCGGCGTCTGACGATGAA----CATCCATTACCGGTGGTTTCTTCGCTT 261
Query 300 CTCTCTTATCTCGACTCGTCACTGTCTCTTCTCTTCTTACTATTAACCCTTTCTCTAAGC 359
|||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 262 CTCTTTTGTCTCGACGCGTCACTGTCTCTTCTCTTCTTACAATTAACCCTTTCTCCAAGC 321
Query 360 TCTCCGCCGATGATTTTTCCGGAGATACGACACCGTGGACCACCGGTTTCATTGGCAATT 419
|||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 322 TCTCCG---ATGATTTTTCCGGAGATATGCCACCGTGGACCACCGGTTTCTTTGGCAATT 378
Query 420 GTGACTCTTATTCGTTCCCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAG-AAT 478
|||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||
Sbjct 379 GTGACTCTTATTCGTTTCCAACGTCTTCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA- 437
Query 479 ATCAAACGATTCGCTAGGAATTACGCTACGTTGTTCATCGTCTTCTTTGCTTGTGCACTA 538
|||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 438 ATCAAACGATTCGCTAGGAATTACACTACGTTATTCATCGTCTTCTTCGCTTGTGCACTA 497
Query 539 TATCAGATGCCACTTGCATTGGTGGGATTGTTAGGAAGCTTAGCTCTTTGGGAGCTATTC 598
||||| | | | ||||||||| ||||||||| ||||||||| ||||||| |||||||
Sbjct 498 TATCA-A----A-T-GCATTGGTGAGATTGTTAGCAAGCTTAGCCCTTTGGGTGCTATTC 550
Query 599 AAATACTGCAGTGATA-AGTGGAAATTTGA 627
||||| ||||||| | | |||||||||||
Sbjct 551 AAATAGTGCAGTGCCAGA-TGGAAATTTGA 579
> Ahg336550 jgi|Araly1|336550|fgenesh1_pg.C_scaffold_1003115
Length=579
Score = 723 bits (391), Expect = 0.0
Identities = 514/570 (90%), Gaps = 21/570 (4%)
Strand=Plus/Plus
Query 63 GGATAATCACGGCG---ACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 119
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 GGATAATCGCGGCGACAACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 85
Query 120 TCCCCGATCCTGCTTTCGAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATC 179
||| |||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 86 TCCTCGATCCTGCTTTTGAATCTTGGCTCCGAGATTCCAGCTACCTCGAGCTCCTCGATC 145
Query 180 ACCGCACCTCCGCCGCTGCAGCTGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 239
|||||||||| || || || || |||||||||||||||||||||||||||||||||||||
Sbjct 146 ACCGCACCTCTGCTGCAGCCGCCGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 205
Query 240 CCGCAACTTCTGCGGCATCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTT 299
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 206 CCGCAACTTCTGCGGCGTCTGACGATGAA----CATCCATTACCGGTGGTTTCTTCGCTT 261
Query 300 CTCTCTTATCTCGACTCGTCACTGTCTCTTCTCTTCTTACTATTAACCCTTTCTCTAAGC 359
|||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 262 CTCTTTTGTCTCGACGCGTCACTGTCTCTTCTCTTCTTACAATTAACCCTTTCTCCAAGC 321
Query 360 TCTCCGCCGATGATTTTTCCGGAGATACGACACCGTGGACCACCGGTTTCATTGGCAATT 419
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 322 TCTCCG---ATGATTTTTCCGGAGATACGCCACCGTGGACCACCGGTTTCTTTGGCAATT 378
Query 420 GTGACTCTTATTCGTTCCCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAG-AAT 478
|||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||
Sbjct 379 GTGACTCTTATTCGTTTCCAACGTCTTCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA- 437
Query 479 ATCAAACGATTCGCTAGGAATTACGCTACGTTGTTCATCGTCTTCTTTGCTTGTGCACTA 538
|||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 438 ATCAAACGATTCGCTAGGAATTACACTACGTTATTCATCGTCTTCTTCGCTTGTGCACTA 497
Query 539 TATCAGATGCCACTTGCATTGGTGGGATTGTTAGGAAGCTTAGCTCTTTGGGAGCTATTC 598
||||| | | | ||||||||| ||||||||| ||||||||| ||||||| |||||||
Sbjct 498 TATCA-A----A-T-GCATTGGTGAGATTGTTAGCAAGCTTAGCCCTTTGGGTGCTATTC 550
Query 599 AAATACTGCAGTGATA-AGTGGAAATTTGA 627
||||| ||||||| | | |||||||||||
Sbjct 551 AAATAGTGCAGTGCCAGA-TGGAAATTTGA 579
> Ahg327582 jgi|Araly1|327582|fgenesh1_pm.C_scaffold_6002802
Length=552
Score = 643 bits (348), Expect = 0.0
Identities = 427/464 (92%), Gaps = 9/464 (2%)
Strand=Plus/Plus
Query 86 ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTCGAATCTTGG 145
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCTCGATCCTGCTTTCGAATCTTGG 60
Query 146 CTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCTGCAGCTGCC 205
|| ||||||||| | ||||||||||||||||||||||||||||| || || || || |||
Sbjct 61 CTCCGAGATTCCAGCTACCTCGAGCTCCTCGATCACCGCACCTCTGCTGCAGCCGCCGCC 120
Query 206 GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCATCTGACGAT 265
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 121 GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGTTGCCGCAACTTCTGCGGCGTCTGACGAT 180
Query 266 GTCGTTTCATCCATTACCGGTGGTTTCTTCGCTTCTCTCTTATCTCGACTCGTCACTGTC 325
| ||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 181 GAA----CATCCATTACCGGTGGTTTCTTCGCTTCTCTTTTGTCTCGACGCGTCACTGTC 236
Query 326 TCTTCTCTTCTTACTATTAACCCTTTCTCTAAGCTCTCCGCCGATGATTTTTCCGGAGAT 385
|||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 237 TCTTCTCTTCTTACAATTAACCCTTTCTCCAAGCTCTCCG---ATGATTTTTCCGGAGAT 293
Query 386 ACGACACCGTGGACCACCGGTTTCATTGGCAATTGTGACTCTTATTCGTTCCCGTCGTCT 445
||| |||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 294 ACGCCACCGTGGACCACCGGTTTCTTTGGCAATTGTGACTCTTATTCGTTTCCAACGTCT 353
Query 446 TCTCAGCAAGCGAGAATGAGAGTTCATGAG-AATATCAAACGATTCGCTAGGAATTACGC 504
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| |
Sbjct 354 TCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA-ATCAAACGATTCGCTAGGAATTACAC 412
Query 505 TACGTTGTTCATCGTCTTCTTTGCTTGTGCACTATATCAGATGC 548
|||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 413 TACGTTATTCATCGTCTTCTTCGCTTGTGCACTATATCAAATGC 456
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 617 TGGAAATTTGATCGTCACCCTTCCATGAGGAAACTCTCGAT 657
||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TGGAAATTTGATCGTCACCCTTCCATGAGGAAATTCTCGAT 521
> Ahg321420 jgi|Araly1|321420|fgenesh1_pm.C_scaffold_4001477
Length=552
Score = 643 bits (348), Expect = 0.0
Identities = 427/464 (92%), Gaps = 9/464 (2%)
Strand=Plus/Plus
Query 86 ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTCGAATCTTGG 145
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCTCGATCCTGCTTTCGAATCTTGG 60
Query 146 CTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCTGCAGCTGCC 205
|| ||||||||| | ||||||||||||||||||||||||||||| || || || || ||
Sbjct 61 CTCCGAGATTCCAGCTACCTCGAGCTCCTCGATCACCGCACCTCTGCTGCAGCCGCCACC 120
Query 206 GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCATCTGACGAT 265
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCGTCTGACGAT 180
Query 266 GTCGTTTCATCCATTACCGGTGGTTTCTTCGCTTCTCTCTTATCTCGACTCGTCACTGTC 325
| ||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 181 GAA----CATCCATTACCGGTGGTTTCTTCGCTTCTCTTTTGTCTCGACGCGTCACTGTC 236
Query 326 TCTTCTCTTCTTACTATTAACCCTTTCTCTAAGCTCTCCGCCGATGATTTTTCCGGAGAT 385
|||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 237 TCTTCTCTTCTTACAATTAACCCTTTCTCCAAGCTCTCCG---ATGATTTTTCCGGAGAT 293
Query 386 ACGACACCGTGGACCACCGGTTTCATTGGCAATTGTGACTCTTATTCGTTCCCGTCGTCT 445
||| |||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 294 ACGCCACCGTGGACCACCGGTTTCTTTGGCAATTGTGACTCTTATTCGTTTCCAACGTCT 353
Query 446 TCTCAGCAAGCGAGAATGAGAGTTCATGAG-AATATCAAACGATTCGCTAGGAATTACGC 504
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| |
Sbjct 354 TCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA-ATCAAACGATTCGCTAGGAATTACAC 412
Query 505 TACGTTGTTCATCGTCTTCTTTGCTTGTGCACTATATCAGATGC 548
|||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 413 TACGTTATTCATCGTCTTCTTCGCTTGTGCACTATATCAAATGC 456
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 617 TGGAAATTTGATCGTCACCCTTCCATGAGGAAACTCTCGAT 657
||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TGGAAATTTGATCGTCACCCTTCCATGAGGAAATTCTCGAT 521
> Ahg905956 jgi|Araly1|905956|Al_scaffold_0003_3084
Length=1263
Score = 640 bits (346), Expect = 0.0
Identities = 432/472 (92%), Gaps = 12/472 (3%)
Strand=Plus/Plus
Query 63 GGATAATCACGGCG---ACAACAACAATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 119
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 26 GGATAATCGCGGCGACAACAACAACAATCGCTTTCTCTCCTAATCCTCTCTCTCTAAGCG 85
Query 120 TCCCCGATCCTGCTTTCGAATCTTGGCTTCGAGATTCCGGTTACCTCGAGCTCCTCGATC 179
||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 86 TCCTCGATCCTGCTTTCGAATCTTGGCTCCGAGATTCCAGCTACCTCGAGCTCCTCGATC 145
Query 180 ACCGCACCTCCGCCGCTGCAGCTGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 239
|||||||||| || || || || |||||||||||||||||||||||||||||||||||||
Sbjct 146 ACCGCACCTCTGCTGCAGCCGCCGCCGCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTG 205
Query 240 CCGCAACTTCTGCGGCATCTGACGATGTCGTTTCATCCATTACCGGTGGTTTCTTCGCTT 299
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 206 CCGCAACTTCTGCGGCGTCTGACGATGAA----CATCCATTACCGGTGGTTTCTTCGCTT 261
Query 300 CTCTCTTATCTCGACTCGTCACTGTCTCTTCTCTTCTTACTATTAACCCTTTCTCTAAGC 359
|||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 262 CTCTTTTGTCTCGACGCGTCACTGTCTCTTCTCTTCTTACAATTAACCCTTTCTCCAAGC 321
Query 360 TCTCCGCCGATGATTTTTCCGGAGATACGACACCGTGGACCACCGGTTTCATTGGCAATT 419
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 322 TCTCCG---ATGATTTTTCCGGAGATACGCCACCGTGGACCACCGGTTTCTTTGGCAATT 378
Query 420 GTGACTCTTATTCGTTCCCGTCGTCTTCTCAGCAAGCGAGAATGAGAGTTCATGAG-AAT 478
|||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||
Sbjct 379 GTGACTCTTATTCGTTTCCAACGTCTTCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA- 437
Query 479 ATCAAACGATTCGCTAGGAATTACGCTACGTTGTTCATCGTCTTCTTTGCTT 530
|||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 438 ATCAAACGATTCGCTAGGAATTACACTACGTTATTCATCGTCTTCTTCGCTT 489
> Ahg327202 jgi|Araly1|327202|fgenesh1_pm.C_scaffold_6002422
Length=552
Score = 638 bits (345), Expect = 0.0
Identities = 426/464 (92%), Gaps = 9/464 (2%)
Strand=Plus/Plus
Query 86 ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCCCGATCCTGCTTTCGAATCTTGG 145
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCTTTCTCTCCTAATCCTCTCTCTCTAAGCGTCCTCGATCCTGCTTTCGAATCTTGG 60
Query 146 CTTCGAGATTCCGGTTACCTCGAGCTCCTCGATCACCGCACCTCCGCCGCTGCAGCTGCC 205
|| ||||||||| | ||||||||||||||||||||||||||||| || || || ||||||
Sbjct 61 CTCCGAGATTCCAGCTACCTCGAGCTCCTCGATCACCGCACCTCTGCTGCAGCCGCTGCC 120
Query 206 GCTTCCTCCTCCGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCATCTGACGAT 265
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GCTTCCTCCTCTGCCTCCGTTTCATCCTCAGCTGCCGCAACTTCTGCGGCGTCTGACGAT 180
Query 266 GTCGTTTCATCCATTACCGGTGGTTTCTTCGCTTCTCTCTTATCTCGACTCGTCACTGTC 325
| ||||||||||||||||||| ||||||||||| || ||||||| ||||||||||
Sbjct 181 GAA----CATCCATTACCGGTGGTTTTTTCGCTTCTCTTTTGTCTCGACGCGTCACTGTC 236
Query 326 TCTTCTCTTCTTACTATTAACCCTTTCTCTAAGCTCTCCGCCGATGATTTTTCCGGAGAT 385
|||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 237 TCTTCTCTTCTTACAATTAACCCTTTCTCCAAGCTCTCCG---ATGATTTTTCCGGAGAT 293
Query 386 ACGACACCGTGGACCACCGGTTTCATTGGCAATTGTGACTCTTATTCGTTCCCGTCGTCT 445
||| |||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 294 ACGCCACCGTGGACCACCGGTTTCTTTGGCAATTGTGACTCTTATTCGTTTCCAACGTCT 353
Query 446 TCTCAGCAAGCGAGAATGAGAGTTCATGAG-AATATCAAACGATTCGCTAGGAATTACGC 504
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| |
Sbjct 354 TCTCAGCAAGCGAGAATTAGAGTTCATGAGTAA-ATCAAACGATTCGCTAGGAATTACAC 412
Query 505 TACGTTGTTCATCGTCTTCTTTGCTTGTGCACTATATCAGATGC 548
|||||| |||||||||||| | ||||||||||||||||| ||||
Sbjct 413 TACGTTATTCATCGTCTTCGTCGCTTGTGCACTATATCAAATGC 456
Score = 71.3 bits (38), Expect = 1e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 617 TGGAAATTTGATCGTCACCCTTCCATGAGGAAACTCTCGAT 657
||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TGGAAATTTGATCGTCACCCTTCCATGAGGAAATTCTCGAT 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5