BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27550.1
Length=2428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889395 jgi|Araly1|889395|Al_scaffold_0007_1381 3936 0.0
Ahg312668 jgi|Araly1|312668|fgenesh1_pm.C_scaffold_1001448 876 0.0
Ahg477022 jgi|Araly1|477022|fgenesh2_kg.2__2152__AT1G78580.1 612 4e-174
> Ahg889395 jgi|Araly1|889395|Al_scaffold_0007_1381
Length=2385
Score = 3936 bits (2131), Expect = 0.0
Identities = 2307/2392 (96%), Gaps = 11/2392 (0%)
Strand=Plus/Plus
Query 41 ATGGCAAGGCCACGACTGCTTGTAGTGTCGATGTCGCTTCCGGTCACTGCAAAGAGGACT 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAGGCCACGACTGCTTGTAGTGTCGATGTCGCTTCCGGTCACTGCAAAGAGGACT 60
Query 101 GGAGAAGAGTCTTGGTCTTTCACGATGAGTCCTGGTGGTCTAGTTAGTGCTCTTCTAGGT 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAGAAGAGTCTTGGTCTTTCACGATGAGTCCTGGTGGTCTAGTTAGTGCTCTTCTAGGT 120
Query 161 TTGAAAGAATTTGAGACCAAATGGATTGGATGGCCTGGAGTAGATGTTCATGATGCGATT 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGAAAGAATTTGAGACCAAATGGATTGGATGGCCTGGAGTAGATGTTCATGATGCGATT 180
Query 221 GGCAAAAAGACACTCTCCATTACCCTAGCTGAAAAGGGATGTATCCCAGTGTTTTTGGAA 280
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 GGCAAAAAGACACTCTCCATTACCCTAGCTGAAAAGGGATGTATCCCAGTGTTTCTGGAA 240
Query 281 GAAGTGTGTGATCAATACTATAATGGCTACTGCAACAATATTCTGTGGCCGATTTTTCAC 340
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GAAGTGTGTGATCAATACTATAATGGCTACTGCAATAATATTCTGTGGCCGATTTTTCAC 300
Query 341 TACTTGGGAACGCCACCAGAATATCGTAACGATGCAACCATAACATACCAGTCACAGTAT 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACTTGGGAACGCCACCAGAATATCGTAACGATGCAACCATAACATACCAGTCACAGTAT 360
Query 401 GAAGCATACAAGAAAGCAAATCAAAT-TTTCTTTGATGTTGTCAAAGAGCACTATGAAGA 459
|| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 361 GATGCATACAAGAAAGCAAATCAAATATTT-TTTGATGTTGTTAAAGAGCACTATGAAGA 419
Query 460 AGGAGATGTGGTTTGGTGCCATGATTATCATGTTATGCTTCTTCCTCAATATCTTAAGGA 519
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 AGGAGATGTGGTTTGGTGCCATGATTATCATGTCATGCTTCTTCCTCAATATCTTAAGGA 479
Query 520 ATACAACAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCATTTCCTTCTTCCGAGAT 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATACAACAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCATTTCCTTCTTCCGAGAT 539
Query 580 GTACAAAACATTGCCCTCGCGATCCGATCTGCTTCGTTCTGTTCTTACTGCTGATTTAGT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTACAAAACATTGCCCTCGCGATCCGATCTGCTTCGTTCTGTTCTTACTGCTGATTTAGT 599
Query 640 TGGTTTCCATACCTATGACTTCGCAAGACATTTTTTGAATGCATGCATGTGTATTCTTGG 699
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGTTTCCATACCTATGATTTTGCAAGACATTTTTTGAATGCATGCATGTGTATTCTTGG 659
Query 700 AGTCGAAGCAACATCTGAAGGAATTGTGGATCAGGGCAAAGTCACTCGAGTAGCTGTTTT 759
||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 660 AGTGGAAGCAACATCTGAAGGAGTTGTGGATCAGGGAAAAGTCACTCGAGTAGCTGTTTT 719
Query 760 TCCCATTGGGATAGAACCTGAGAGGTTTATAAACACAAGTGAACTCTCTGAAGTTGTTCA 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TCCCATTGGGATAGAACCTGAGAGGTTTATAAACACAAGTGAACTCTCTGAAGTCGTTCA 779
Query 820 ATACATGAAGAAGTTCAAAAACGATTTTGGTGGGAGAAAGTTGATATTAGGTGTTGATCG 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATACATGAAGAAGTTCAAAAACGATTTTGGTGGGAGAAAGTTGATATTAGGTGTTGATCG 839
Query 880 TCTCGATACGATCAAAGGGATTCCACAAAAATATCAGGCATTTGAGAAGTTCTTAGAGGA 939
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 840 TCTCGATACGATCAAAGGGATTCCACAGAAATATCAGGCATTTGAGAAGTTTTTAGAGGA 899
Query 940 AAATGCAGAGTGGCGTGGTAAAGTCATGTTACTTCAGATTGCAGTGCCAACAAGGAACGG 999
||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 900 AAATGAAGATTGGCGTGGTAAAGTCATGTTACTTCAGATTGCAGTACCAACAAGGAATGG 959
Query 1000 TATTGGTGAATATCAAAAGATCAAAGACCAATGTCATTACCATGTTGGACGAATTAATGG 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATTGGTGAATATCAAAAGATCAAAGACCAATGTCATTACCATGTTGGACGAATTAATGG 1019
Query 1060 TCGTTTTGGTTCCATCTCTTCTGTTCCAATAATTCACCTGGATTGTTCTATTGACTTTAA 1119
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 TCGTTTTGGTTCCATCTCTGCTGTTCCAATAATTCATCTGGATTGTTCTATTGACTTTAA 1079
Query 1120 TCAATTATGCGCACTTTATGCCATCACAGATGTATTACTTGTAACATCTCTGAGAGATGG 1179
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 TCAATTATGCGCACTCTATGCCATCACAGATGTATTACTTGTAACATCTTTGAGAGATGG 1139
Query 1180 AATGAACCTTGTGAGTTCTGAATTCATTGCCTGCCAAAAAGCAGAAAAAGGGGTTCTCAT 1239
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1140 AATGAACCTTGTGAGTTCTGAATTTATTGCCTGCCAAAAAGAAGAAAAAGGGGTTCTCAT 1199
Query 1240 TCTAAGCGAGTTTGCAGGTGCTGGACAGTCACTTGGTGCCGGAGCTATTTTAGTGAATCC 1299
||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 1200 TCTAAGCGAGTTTGCAGGTGCTGGACAGTCACTTGGTGCTGGAGCTCTTCTAGTGAATCC 1259
Query 1300 TTGGAACATTAAAGAAGTTTCTTCTGCCATTGGAGAAGCTCTAAATATGTCACATGAAGA 1359
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTGGAACATTAAAGAAGTGTCTACTGCCATTGGAGAAGCTCTAAATATGTCACATGAAGA 1319
Query 1360 AAAGGAGAGAAAACATAAAATCAATTTTCAGTATGTGAAAACTCACTCCACTCAGCAGTG 1419
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1320 AAAGGAGAGAAAACATAAAATCAATTTTCAGTATGTGAAAACTCATTCTACTCAGCAGTG 1379
Query 1420 GGCAGATGATTTCATGAA-ATTGACTCTTACAAACATTTTATGCAGTAAACTTATTGAGA 1478
|||||||||||||||||| || ||||||||||||| |||| |||||||||||||| || |
Sbjct 1380 GGCAGATGATTTCATGAAGAT-GACTCTTACAAACCTTTTTTGCAGTAAACTTATCGAAA 1438
Query 1479 TTACAACCAGCGCGGAGCTAGGAGCTGGATTAGCCGCCACACTTGAACTTCCAGAACATG 1538
||||||| | ||| |||||| |||||||| |||| |||| |||||||||| |||||||
Sbjct 1439 TTACAACTAACGCTGAGCTACGAGCTGGAAAAGCC-CCAC--TTGAACTTCCTGAACATG 1495
Query 1539 ATGTGATTCAACAATACTCAAAGTCTAACAATAGACTGCTGATTCTTGGATTCTATGGAA 1598
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1496 ATGTGATTCAACAATACTCAAAGTCTAACAATAGACTGCTAATTCTTGGATTCTATGGAA 1555
Query 1599 CGCTCACTCAGCCGATGAAAAATCAAGAGAGAAGAGGCGACGGAATGAATCTTGAACTGC 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CGCTCACTCAGCCGATGAAAAATCAAGAGAGAAGAGGCGACGGAATGAATCTTGAACTGC 1615
Query 1659 ATCCACAGCTAAAAGAGAGACTCAAAGAATTATGCAGTGATCCAAAAACAACAGTAGTTG 1718
| |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 ACCCACAGGTTAAAGAAAGACTCAAAGAATTATGCAGTGATCCAAAAACAACAGTAGTTG 1675
Query 1719 TCCTGAGTAGAAGTGAAAAATGCATATTGGATAAAAACTTTGGAGAATATAACATGTGGT 1778
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TCCTGAGCAGAAGTGAAAAAAGCATATTGGATAAAAACTTTGGAGAATATAACATGTGGT 1735
Query 1779 TGGCTGCTGAAAATGGGATGTTTCTAAGGCATACAAGTGGAGAATGGGTGACAAGAATTC 1838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TAGCTGCTGAAAATGGGATGTTTCTAAGGCATACAAGTGGAGAATGGGTGACAAGAATTC 1795
Query 1839 CAGAACACATGAA-TTTGGAATGGATTGATGGTGTTAAGCATGTTTTCAAGTACTTCACT 1897
||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1796 CAGAACACATGAACTTTG-AATGGATTGATGGTGTCAAGCATGTTTTCAAGTACTTCACT 1854
Query 1898 GAAAGAACTCCAGGATCATATCTCGAAACAAGCGAGGCTTCGCTTGTATGGAACTACGAA 1957
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1855 GAAAGAACTCCAGGATCATATCTCGAAACAAGCGAGACTTCGCTTGTATGGAACTACGAA 1914
Query 1958 AATGCAGATGCTGAATTCGGGAGAGCTCAAGCAAGAGACATGTTACAACACTTGTGGGCA 2017
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 TATGCAGATGCTGAATTTGGGAGAGCTCAAGCAAGAGACATGTTACAACACTTGTGGGCA 1974
Query 2018 GGACCAATCTCTAATGCCTCAGTGGATGTTGTTAGAGGAGGCCAATCTGTTGAAGTCCAT 2077
||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1975 GGACCAATCTCTAATGCATCAGTGGATGTTGTTCGAGGAGGCCACTCTGTTGAAGTCCAT 2034
Query 2078 GCCGTTGGTGTGACAAAGGGAAGTGCAATGGAGCGTATTCTCGGAGAAATAGTGCATAAC 2137
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 2035 GCCGTTGGTGTGACAAAGGGAAGTGCAATGGAGCGTATTCTCGGAGGAATAGTGCACAAC 2094
Query 2138 AAGTCAATGGCTACACCAATTGACTATGTCTTGTGCATTGGTTGTTTCTTGGGGAAAGAC 2197
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2095 AAGTCAATGACTGCACCAATTGATTATGTCTTGTGCATTGGTTGTTTCTTGGGGAAAGAC 2154
Query 2198 GAAGACGTTTACACATTCTTCGAGCCAGA-GTTGACCAAGAAAGCCAAGTCGCTTTCTTC 2256
|||||||||||||||||||||||||| || ||| ||||||||| ||||| ||| | ||||
Sbjct 2155 GAAGACGTTTACACATTCTTCGAGCCTGAAGTT-ACCAAGAAAACCAAGCCGCCTCCTTC 2213
Query 2257 TTCAGGTAGTGACTCCCCCAAGAAGGTATCATCGACCATTGTTGACCTCAAGGGAGAGAA 2316
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2214 TTCAGATAGTGACTCCCCCAAGAAGGTATCATCGACCATCGTTGACCTCAAGGGAGAGAA 2273
Query 2317 TTACTTCTCCGTAGCTATTGGACAAACGCACACAAAGGCTCGCTATTTCCTTGACTCATC 2376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 TTACTTCTCCGTAGCTATTGGACAAACGCACACAAAGGCTCGCTATTTCCTTGACTCATC 2333
Query 2377 TGATGACGTTGTGAAACTTATTGGCAAGCTTTGCACACACAACAATGCTTGA 2428
||||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 2334 TGATGACGTTGTGCAACTGATCCACAAGCTTTGCACACACAACAATGCTTGA 2385
> Ahg312668 jgi|Araly1|312668|fgenesh1_pm.C_scaffold_1001448
Length=2529
Score = 876 bits (474), Expect = 0.0
Identities = 1129/1435 (79%), Gaps = 85/1435 (6%)
Strand=Plus/Plus
Query 46 AAGGCCACGACTGCTTGTAGTGTCGATGTC-GCTTCCGGTCACTGCAAAGAGGACTGGAG 104
||||||| |||| ||||| ||| | | | ||||||||| |||||||||| || || |
Sbjct 30 AAGGCCAAGACTACTTGTGGTGGCTA-ACCGGCTTCCGGTTTCTGCAAAGAGAACGGGGG 88
Query 105 AAGAGTCTTGGTCT-TTCACGATGAGTCCTGGTGGTCTAGTTAGTGCTCTTCTAGGTTTG 163
|| | ||||||||| || | ||||||||||||||| |||| |||| |||||||||| |
Sbjct 89 AAAATTCTTGGTCTCTTGA-AATGAGTCCTGGTGGTTTAGTCAGTGGTCTTCTAGGTGT- 146
Query 164 AA-A---GAATTTGAGACCAAATGGATTGGATGGCCTGGAGTAGATGT-TCATGATGCGA 218
|| | |||| || ||||||||| |||||||||||||||| ||||| | || ||| |
Sbjct 147 AACATCTCAATTAGATACCAAATGGGTTGGATGGCCTGGAGTTGATGTGT-ATAATG-AA 204
Query 219 -TTGGCAAAAA-GACACT--CTCCATTACCCTAGCTGAAAAGGGA-TGTATCCCAGTGTT 273
||| ||||| | |||| || | | | ||||| | ||| | | |||||||| |||||
Sbjct 205 GTTGAAAAAAATG-CACTAACT-AAAT-CTCTAGCCG-AAATGAAGTGTATCCCTGTGTT 260
Query 274 -TTTGGAA-GAAGTGTGTGATCAATACTATAATGGCTACTGCAACAATATTCTGTGGCCG 331
|| || | || | |||||| ||||| ||||| || ||||| |||| |||||||
Sbjct 261 CCTT--AATGGGGTTTTTGATCAGTACTACAATGGTTATTGCAATGGTATTTTGTGGCCA 318
Query 332 ATTTTTCACT-ACTTGGGAAC-GCCACCAGAATATCGTAACGATG---C-AACCATAACA 385
||| |||| | || |||| || |||| |||| ||| ||| ||| | ||||| |||
Sbjct 319 ATTCTTCA-TCACATGGG-ACTTCCACAAGAAGATC--AAC-ATGACACAAACCA-AACT 372
Query 386 TACCAGTCACAGTATGAAGCATACAAGAAAGCAAATCAAAT-TTTCTTTGATGTTGTCAA 444
| | | |||| ||||| ||||||||||||||||||| ||| |||| ||||||| | ||
Sbjct 373 TTCGAAACACAATATGATGCATACAAGAAAGCAAATCGAATGTTTC-TTGATGTCAT-AA 430
Query 445 -AGAGCACTATGAAGAAGGAGAT-GTGGTTTGGTGCCATGATTATCATGTTATGCTTCTT 502
| || ||||||||||||| ||| | |||||||| |||||||||||| | ||| |||||
Sbjct 431 TACAGAACTATGAAGAAGGTGATACT-GTTTGGTGTCATGATTATCATCTCATGTTTCTT 489
Query 503 CCTCAATATCTTAAGGAATACAACAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCA 562
|||||||| ||||| || |||||| || || ||||||||||||||||||||| |||||
Sbjct 490 CCTCAATACCTTAAAGAGCACAACAACAAAATCAAAGTTGGATGGTTTCTCCATTCACCA 549
Query 563 TTTCCTTCTTCCGAGATGTACAAAACATTGCCCTCGCGATCCGATCTGCTTCGTTCTGTT 622
|||||||| || ||| | ||||||||||||||||||||||| || || |||||| | |||
Sbjct 550 TTTCCTTCCTCTGAGGTCTACAAAACATTGCCCTCGCGATCAGAGCTTCTTCGTGCGGTT 609
Query 623 CTTACTGCTGATTTAGTTGG-TTTCCATACCTATGACTTCGCAAGACATTTTTTGAATGC 681
||||| ||||||||| |||| ||| || || ||||| || | ||||||||| |||| | |
Sbjct 610 CTTACAGCTGATTTACTTGGCTTT-CACACATATGATTTTGTAAGACATTTCTTGAGTAC 668
Query 682 ATGCATGT-GTATTCTTGGAGTCGAAGCAACATC-TGAAGGAATTGTGGATCAGGGCAAA 739
||||| | | ||||||||||| |||| |||| | ||||||| ||||| |||| |||| |
Sbjct 669 ATGCA-CTCGAATTCTTGGAGTTGAAGGAACA-CATGAAGGAGTTGTGTATCAAGGCAGA 726
Query 740 GTCACTCGAGTAGCTGTTTTTCCCATTGGGATAGAACCTGAGAGGTTTATAA-ACACAAG 798
||||||||||||||||||||||||||||| || || ||||| ||||||||| | ||| |
Sbjct 727 GTCACTCGAGTAGCTGTTTTTCCCATTGGAATTGATCCTGATCGGTTTATAAGA-ACATG 785
Query 799 TGAA-CTCTCTGAAGTTGTTCA-ATACATGAA-GAAG-TTCAAAAACGAT-TTTGGTGGG 853
| || ||| ||||||| || | | ||||| || | || ||| | || |||| |||
Sbjct 786 T-AAGCTCCCTGAAGTCACACAGAAA-ATGAATGA-GCTT-AAAGA-GAGGTTTGCTGGC 840
Query 854 AGAAAGTTGATATTAGGTGTTGATCGTCTCGATACGATCAAAGGGATTCCACAAAAATAT 913
| |||| |||||||||||||||||||||| |||| |||||||||||| ||||| || |||
Sbjct 841 AAAAAGGTGATATTAGGTGTTGATCGTCTTGATATGATCAAAGGGATCCCACAGAAGTAT 900
Query 914 CAGGCATTTGAGAAGTT-CTTAGAGGAAAATGCAGAGTGGCGTGGTAAAGTCATGTTACT 972
| ||||||||||| || || ||| |||||| | | ||||| | |||||| || || |
Sbjct 901 CTTGCATTTGAGAAATTTCT-AGAAGAAAATCCCTATTGGCGCGATAAAGTTGTGCTAGT 959
Query 973 TCAGATTGCAGTGCCAACAAGGAACGGTATTGGTGAATATCAAAAGATCAAA-GACCAAT 1031
|| ||||||||||||||||| || | | | |||||||| |||| ||||| | ||||
Sbjct 960 GCAAATTGCAGTGCCAACAAGAAATGATGTCCCTGAATATCGAAAGCTCAAAAG-CCAA- 1017
Query 1032 GT-CATT-AC-CATGTTGGACGAATTAATGGTCGTTTTGGTTCCATCTCTTCTGTTCCAA 1088
|| ||| || | |||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct 1018 GTTCATGGACTC--GTTGGACGCATAAATGGTCGTTTTGGTTCTGTCTCTTCTCTTCCAA 1075
Query 1089 TA-ATTCACCTGGATTGTTCTATTGACTTTAATCAA-TTATGCGCACTTTATGCCATCAC 1146
| || || |||||||||||| ||||||| || | | ||||| ||||| || || || |
Sbjct 1076 TCCAT-CATCTGGATTGTTCTGTTGACTTCAA-CTACTTATGTGCACTGTACGCAATTGC 1133
Query 1147 AGATGTATTACTTGTAACATCTCTGAGAGATGGAATGAACCTTGTGAGTTCTGAATTCAT 1206
||||||| | |||||||||||| |||||||||||||||| ||||| |||| |||||| |
Sbjct 1134 AGATGTAATGCTTGTAACATCTTTGAGAGATGGAATGAATCTTGTTAGTTATGAATTTGT 1193
Query 1207 TGCCTGCCAAAAAGC-AGAAAAAGGGGTTCTCATTCTAAGCGAGTTTGCAGGTGCTGGAC 1265
||| || ||| | || | ||||||||||||| |||| || |||||||||||||||||||
Sbjct 1194 TGCATGTCAAGAGGCCA-AAAAAGGGGTTCTTGTTCTCAGTGAGTTTGCAGGTGCTGGAC 1252
Query 1266 AGTCACTTGGTGCCGGAGCTATT-TTAGTGAATCCTTGGAACATTAAAGAAGTTTCTTCT 1324
|||| ||||||| |||||| | || |||||||||||| | ||| |||||||||||||
Sbjct 1253 AGTCTCTTGGTGTTGGAGCTCTACTT-GTGAATCCTTGGGATGTTACAGAAGTTTCTTCT 1311
Query 1325 GCCATTGGAGAAGCTCTAAATATGTCA-CATGAAGAAAAGGAGAGA-AA-ACATAAAATC 1381
|||||| ||| || ||||||||| || | |||||||| | ||| | || ||| | | |
Sbjct 1312 GCCATTAAAGACGCCCTAAATATGCCAGC-TGAAGAAA-G-AGAAACAAGACACAGATTT 1368
Query 1382 AATTTTCAGTATGTGAAAACTCACTCCACTCAGCAGTGGGCAGATGATTTCATGA 1436
||||||||||||||| | ||||| || || | | |||| | |||||||||||
Sbjct 1369 AATTTTCAGTATGTGTATACTCATTCTGCTAAAAAATGGGGATCTGATTTCATGA 1423
> Ahg477022 jgi|Araly1|477022|fgenesh2_kg.2__2152__AT1G78580.1
Length=3046
Score = 612 bits (331), Expect = 4e-174
Identities = 735/923 (80%), Gaps = 56/923 (6%)
Strand=Plus/Plus
Query 104 GAAGAGTCTTGGTCTTTC-ACGATGAGTCCTGGTGGTCTAGTTAGTGCTCTTC-TAGGT- 160
||||| || |||||| || | ||| ||| ||||||||||||||||||||| || |||||
Sbjct 363 GAAGATTCATGGTCTCTCGA-GATCAGTGCTGGTGGTCTAGTTAGTGCTC-TCTTAGGTG 420
Query 161 TTGAAAGAATTTGAGACCAAATGGATTGGATGGCCTGGAGTAGATGTTCATGATGCGATT 220
|| || ||||||||| | | ||||||||||||| |||||||| |||| | ||||| | ||
Sbjct 421 TT-AAGGAATTTGAGGCTAGATGGATTGGATGGGCTGGAGTAAATGTGCCTGATGAGGTT 479
Query 221 GGCA-AAAAGACACTCT-CCATTA-CCCTAGCTGAAAAG-GGATGTAT-CCCAGTGTT-T 274
|| | | ||| |||| | || | | | ||||| ||| || ||||| ||| |||||
Sbjct 480 GG-ACAGAAGGCACT-TAGCA-AAGCTTTGGCTGAGAAGCGG-TGTATACCC-GTGTTCC 534
Query 275 TTG--GAAGA-AGTGTGTGATCAATACTATAATGGCTACTGCAACAATATTCTGTGGCCG 331
||| ||||| | ||| | |||| ||||||||||| || ||||||||||||||||||||
Sbjct 535 TTGATGAAGAGATTGT-TCATCAGTACTATAATGGTTATTGCAACAATATTCTGTGGCCT 593
Query 332 ATTTTTCACTA-CTTGGGAAC-GCCACCAGAATATCGTAACGATGCAACCATAA-CATAC 388
| |||||||| ||| || || |||| |||| |||| | | |||||| || | |
Sbjct 594 CTGTTTCACTACCTT-GG-ACTTCCACAAGAAGATCGGCTTGCTACAACCAGAAGC-TTT 650
Query 389 CAGTCACAGTATGAAGCATACAAGAAAGCAAATCAAATTTTCTTTGATGTTGTCAAA-GA 447
||||| || | || ||||||||||| ||||||||||| ||| ||||||||| ||| ||
Sbjct 651 CAGTCCCAATTTGCTGCATACAAGAAGGCAAATCAAATGTTCGCTGATGTTGT-AAATGA 709
Query 448 GCACTATGAAGAAGGAGATGTGGTTTGGTGCCATGATTATCATGTTATGCTT-CTTCCTC 506
||||||||||| |||||||| || ||||| ||||| |||||| ||||| || ||||||
Sbjct 710 ACACTATGAAGAGGGAGATGTCGTCTGGTGTCATGACTATCATCTTATG-TTCCTTCCTA 768
Query 507 AATATCTTAAGGAATACAACAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCATTTC 566
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 769 AATGCCTTAAAGAATACAATAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCATTCC 828
Query 567 CTTCTTCCGAGATGTACAAAACA-TTGCCCTCGCGATCCGATCTGCTTCGTTCTGTTCTT 625
|||| || ||||| ||| || || || || ||||| || || ||||| || ||||||
Sbjct 829 CTTCGTCTGAGATACACAGGACGCTT-CCATCACGATCAGAGCTCCTTCGCTCAGTTCTT 887
Query 626 ACTGCTGATTTAGTTGGTTTCCATACCTATGACT-TCGCAAGACATTTTTTGAATGCATG 684
|||||||||||||||| |||||||| ||||||| | ||||| || ||| ||| ||||||
Sbjct 888 GCTGCTGATTTAGTTGGCTTCCATACATATGACTAT-GCAAGGCACTTTGTGAGTGCATG 946
Query 685 CA-TGTGTATTCTTGGAGTCGAAGCAACATCTGAAGGAATTGTGGATCAGGGCAAAG-TC 742
|| | ||||||||||| | |||| |||| |||| ||| ||| |||||| |||| | ||
Sbjct 947 CACTC-GTATTCTTGGACTTGAAGGAACACCTGAGGGAGTTGAGGATCAAGGCAG-GCTC 1004
Query 743 ACTCGAGTAGCTGTTTTTCCCATTGGGATAGAACCTGAGAGGTTTATAA-A-CACAAGTG 800
|| || ||||||| |||||| ||||| ||||| |||||||||||||| | ||| ||
Sbjct 1005 ACACGCGTAGCTGCTTTTCCAATTGGCATAGATTCTGAGAGGTTTATACGAGCACT--TG 1062
Query 801 AACTCTCTGAAGTTGTTCAATACATGAAG-AAGTTCAAA-AACGATTTTGGTGGGAGAAA 858
| || |||| || | ||| |||||||| || || ||| || ||||| | ||| |||||
Sbjct 1063 AGGTCCCTGACGTCATACAACACATGAAGGAA-TTGAAAGAAAGATTT-GCTGGAAGAAA 1120
Query 859 GTTGATATTAGGTGTTGATCGTCTCGATACGATCAAAGGGATTCCACAAAA-ATATCAGG 917
| |||| |||||||||||||| || |||| ||||||||||||||||||||| || || ||
Sbjct 1121 GGTGATGTTAGGTGTTGATCGACTTGATATGATCAAAGGGATTCCACAAAAGAT-TCTGG 1179
Query 918 CATTTGAGAAGTT-CTTAGAGGAAAATGCAGAG-TGGCGTGGTAAAGTCATGTTACTT-C 974
||||||| || || || |||||||||||| || ||||||| |||||| ||||| || |
Sbjct 1180 CATTTGAAAAATTTCTC-GAGGAAAATGCA-AGCTGGCGTGATAAAGTGGTGTTA-TTGC 1236
Query 975 AGATTGCAGTGCCAACAAGGAAC 997
| ||||| ||||||||||| |||
Sbjct 1237 AAATTGCGGTGCCAACAAG-AAC 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91492768490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5