BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27580.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492035 jgi|Araly1|492035|fgenesh2_kg.7__1468__AT4G27580.1 876 0.0
> Ahg492035 jgi|Araly1|492035|fgenesh2_kg.7__1468__AT4G27580.1
Length=719
Score = 876 bits (474), Expect = 0.0
Identities = 627/697 (90%), Gaps = 25/697 (4%)
Strand=Plus/Plus
Query 1 TCCTCCGGATAAATAGGTCCTCACAGAGAATCAAAGGTGTAATGACTTGTGATTCTGAAA 60
||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |||
Sbjct 1 TCCTCCGGATAAATAGGTCGTGACAGAGAATCAAAGGTGTAATGACTTGTGAATCTCAAA 60
Query 61 TTAACCAAAACTTTACCTGAAATAGCTTT-AGTCCATACGAT-TCCTGTATGAATCTGTT 118
|| | ||||||||||| ||||||||||| |||||||||||| |||| |||| |||||||
Sbjct 61 TTGATTAAAACTTTACCAGAAATAGCTTTAAGTCCATACGATCTCCTATATGTATCTGTT 120
Query 119 CACAGCCCTCTCCTCCATTTGCTCAGCCTCCGGTTATAAAATTAAAGAGTTTTGGCCTCT 178
|||||||||||||| ||||||||||||||||| |||||||| | |||| |||||||||||
Sbjct 121 CACAGCCCTCTCCTTCATTTGCTCAGCCTCCGATTATAAAA-T-AAGACTTTTGGCCTCT 178
Query 179 TCAAAGTCAGCTTTGTCTAGAGGAGTTCTCc-ttttctttctttctttttttGCTCCACA 237
|||||| ||||||||| || |||||||| || ||||||||||||||||||| ||||||||
Sbjct 179 TCAAAG-CAGCTTTGTGTAAAGGAGTTC-CCTTTTTCTTTCTTTCTTTTTTGGCTCCACA 236
Query 238 GCTCTTCCCATTGTAAGTTTTGT-TTTCCAAACTAATCCTTTCAATCCAAAAACCATGGG 296
||||| |||||||||| |||| | |||||||||||||| ||||||| ||||||| |||||
Sbjct 237 GCTCTCCCCATTGTAATTTTTTTCTTTCCAAACTAATCTTTTCAAT-CAAAAACTATGGG 295
Query 297 AGCCTGTGCGAGCAAACCTAAGGAATCTGACATCGTCGAAGGCTCTGTCTCGACCGAAAA 356
|| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 296 AGGCTGTGCGAGCAAACCTAAGGAATCTGATATCGTCGAAGGCTCTGTCCCGACCGAAAA 355
Query 357 TGCTGTTGTTGAGTCCAAGAATGCCGCGACCGAGACAGA-TGCCACATTAACTCAGGAGA 415
||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 356 TGCTGTTGTTGAGTCCAAGAATGCCGCGATTGAGACAGACT-CCACATTAACTCAGGAGA 414
Query 416 AGAAGGAAGAGTCCATTGAAGAGACAAAGAAGGAAGGTGAGACAAAAGAGGACTCCTCTG 475
||||||||||||||| ||||| |||||||||||| ||||| |||||||| ||||||||||
Sbjct 415 AGAAGGAAGAGTCCAGTGAAGCGACAAAGAAGGACGGTGAAACAAAAGAAGACTCCTCTG 474
Query 476 AGGCAACCAAGGCTGAGCCAACTCCAGAAGCTGTGAAGGCAGAAGAAAAAACATCTTCTG 535
||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |
Sbjct 475 AGGCAACCAAGGCTGAGCCAACTCCAGAATCTGTGAAGGCAGAAGAGAAAGCATCTTCGG 534
Query 536 AGACTGAGCCACCAGCACAAGAGAC--C-ACACCTGCTGCTAAAACCGATGAGGCCCCTC 592
||||||||||||||||||||||||| | ||||||||| | |||| ||||||||||||||
Sbjct 535 AGACTGAGCCACCAGCACAAGAGACGACCACACCTGCTTCCAAAAGCGATGAGGCCCCTC 594
Query 593 TCGTGATCCTTTGATTTTCATTTCATCAAATC-TCAAAATCATGAGTATGTGCAAGTGCA 651
||||||| ||||||| |||||| ||||| | | || | ||||||||||||||
Sbjct 595 TCGTGATACTTTGATA---ATTTCA--AAATCATGTG--T-AT-A-TATGTGCAAGTGCA 644
Query 652 AGTGTTTCTCACATTGTTATTCGTATGTTCATCTCTG 688
|||||||||||| |||| |||||||||||||||||||
Sbjct 645 AGTGTTTCTCACTTTGTAATTCGTATGTTCATCTCTG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5