BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27585.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945292 jgi|Araly1|945292|scaffold_701521.1 2152 0.0
Ahg950033 jgi|Araly1|950033|scaffold_801920.1 1027 0.0
> Ahg945292 jgi|Araly1|945292|scaffold_701521.1
Length=1276
Score = 2152 bits (1165), Expect = 0.0
Identities = 1239/1276 (97%), Gaps = 0/1276 (0%)
Strand=Plus/Plus
Query 110 TTTCTGATTCTCCCACGAAGATGAACCACCTCGTTCGTAAAAGCTCCGTCGGTTACTCCG 169
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCTGATTCTCCCACTAAGATGAACCACCTCGTTCGTAAAAGCTCCGTCGGTTACTCCG 60
Query 170 CCTTGAGGTCCGTTTCGTACCTCCGTCAATCTGCCGTTACCTCTCCACCTCCGATTTTCT 229
|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 61 CCTTGAGGTCCGTTACGTACCTCCGTCAGTCTGCCGTTACCTCTCCATCTCCGATTTTCT 120
Query 230 CCGCCGCCGCTTCAACCGTTCGCCAGTTCACTTCCGCCGGCTATCCTTCCAACAGTTTTC 289
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CCGCCGCCGCATCAACTGTTCGCCAGTTCACCTCCGCCGGCTATCCTTCCAACAGTTTTC 180
Query 290 AATTGACGCCGCCGACGAATTGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTTTGTGA 349
| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTTAACGCCGCCGGTGAATTGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTTTGTGA 240
Query 350 TTGAGCGATTCGGTAAATACGCTACGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGT 409
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TTGAGCGATTCGGTAAATACGCTAAGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGT 300
Query 410 TCGTGGATCGTATTGCTTATGTTCATTCTCTCAAGGAAGAAGCTATCCCGATTCCGAATC 469
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 TCGTGGATCGTATTGCTTATGTTCATTCTCTCAAGGAAGAAGCAATCCCGATTCCGAATC 360
Query 470 AGACTGCGATTACTAAAGACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGA 529
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACTGCGATTACCAAAGACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGA 420
Query 530 TTGTGGATCCTAAGTTAGCTTCTTATGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGC 589
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TTGTGGATCCTATGTTAGCTTCTTACGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGC 480
Query 590 TGGCTCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACTCTTGATAAGACCTTTGAGG 649
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 TGGCTCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACGCTTGATAAGACCTTTGAGG 540
Query 650 AACGAGACACTCTCAACGAGAAGATAGTGGAAGCCATCAATGTTGCTGCAAAAGACTGGG 709
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 541 AACGAGACACTCTCAACGAGAAGATAGTGGAAGCCATCAATGTTGCTGCTAGAGACTGGG 600
Query 710 GTCTTCAGTGCCTTCGTTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGCGAGCTG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GTCTTCAGTGCCTTCGTTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGAGAGCTG 660
Query 770 CTATGGAAATGCAAGCTGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTATGGAAATGCAAGCTGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAG 720
Query 830 GAGAAAGGCAATCCCATATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCAT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGAAAGGCAATCCCATATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCAT 780
Query 890 CTGAAGCAGCAAAGATGGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTGAAGCAGCAAAGATGGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAG 840
Query 950 CTAGAGCACAAGCAACTGCGAAAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTG 1009
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTAGAGCACAAGCAACTGCGAGAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTG 900
Query 1010 GGGGAGTAGAGGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGGGAGTAGAGGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACAGCCTTCGGTAACA 960
Query 1070 TTGCCAAGGAGGGTACGATAATGTTGCTTCCAAGTGGTGCTTCAAATCCTGCTAGCATGA 1129
||||||| ||||| |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 961 TTGCCAAAGAGGGCACGACAATGTTGCTTCCAAGTACTGCTTCAAATCCTGCTAGCATGA 1020
Query 1130 TTGCTCAAGCTTTAACAATGTACAAAAGCCTTGTCATCAATGGTCCAAGCAAAGATCACC 1189
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 TTGCTCAAGCTTTAACAATGTACAAAAGCCTTGTCATCAATGGTCCAAGCAGAGATCACC 1080
Query 1190 AAGAAACACAAGCACTTGATGAAACAGATTTGGAAGAGTTGGAAGACATGGGTGAGAAAC 1249
|||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct 1081 AAGAAACACAAGCACTTGATGAAACAGACTTGGAAGAGTTGGAAGACCTGGATGAGAAAC 1140
Query 1250 ATATATCAGAAGGCTCTAATAACCGATCAGGCTCAATATCATTTGACACAGAGAAACCAG 1309
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 1141 ATATATCAGAAGGCTCTAATAACCGATCAGGCTCAACATCCTTTGACACCGAGAAACCAG 1200
Query 1310 GTCACACCGGTGAACCACGATTTTCTCTTCAGAACCGCAACAAGGATCCGCAGTAGGCAG 1369
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1201 GTCACACCGGTGAACCACGATTTTCTCTTCAGGACCGCAACAAGGATCCGCGGTAGGCAG 1260
Query 1370 CCGAACCGGGGATGAG 1385
|||||| ||||||||
Sbjct 1261 CCGAACTTGGGATGAG 1276
> Ahg950033 jgi|Araly1|950033|scaffold_801920.1
Length=1258
Score = 1027 bits (556), Expect = 0.0
Identities = 777/884 (88%), Gaps = 13/884 (1%)
Strand=Plus/Plus
Query 298 CCGCCGACGAATTGGGGAATCCGGATAGTTCCGGAGAGGAAGGCGTT-TGTGATTGAGCG 356
|||||| | || ||||||||||| || || ||||||||||| || || ||||||||||||
Sbjct 328 CCGCCGGCTAACTGGGGAATCCGAATCGTGCCGGAGAGGAAAGC-TTGTGTGATTGAGCG 386
Query 357 ATTCGGTAAA-TACGCTACGACGTTGCCGTCGGGGATTCATTTCCTCATTCCGTTCGTGG 415
|| |||||| | | | ||||| |||||| |||||||||| ||||| ||||||| ||||
Sbjct 387 GTTTGGTAAATTCCAC-ACGACTTTGCCGGCGGGGATTCACTTCCTTGTTCCGTTTGTGG 445
Query 416 ATCGTATTGCTTATGTTCATTCTCTCAAGGAAGAAGCTATCCCGATTCCG-AATCAGACT 474
||||||||||||||||||||||||| ||||||||||| || || ||| | |||||||||
Sbjct 446 ATCGTATTGCTTATGTTCATTCTCTAAAGGAAGAAGCGATTCCTATT-GGTAATCAGACT 504
Query 475 GCGATTACTAAA-GACAACGTTAGTATCCACATCGATGGTGTTCTCTACGTTAAGATTGT 533
|||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 505 GCGATTAC-AAAGGATAACGTTAGCATCCACATCGATGGTGTTCTCTACGTTAAGATTGT 563
Query 534 GGATCCTAAGTTAGCTTCTTATGGCGTTGAGAGTCCTATCTATGCTGTTGTACAGCTGGC 593
|||||||||||| ||||||||||||||||||| ||| |||||||||||| | ||| ||||
Sbjct 564 GGATCCTAAGTTGGCTTCTTATGGCGTTGAGAATCCAATCTATGCTGTTATGCAGTTGGC 623
Query 594 TCAGACCACAATGCGTAGTGAGCTTGGTAAGATCACTCTTGATAAGACCTTTGAGGAACG 653
|||||| ||||||||||||||||| || || || |||||||| ||||| |||||||||||
Sbjct 624 TCAGACTACAATGCGTAGTGAGCTCGGGAAAATTACTCTTGACAAGACTTTTGAGGAACG 683
Query 654 AGACACTCTCAACGAGAAGATAGTGGAAGCCATCAATGTTGCTGCAAAAGACTGGGGTCT 713
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 684 GGACACTCTCAATGAGAAGATTGTGGAAGCCATCAATGTTGCTGCAAAAGATTGGGGTCT 743
Query 714 TCAGTGCCTTCGTTATGAGATAAGGGATATTATGCCCCCTCATGGAGTGCGAGCTGCTAT 773
|||||| |||||||||||||| |||||||| ||||| ||| |||||||| ||| ||||||
Sbjct 744 TCAGTGTCTTCGTTATGAGATCAGGGATATCATGCCTCCTAATGGAGTGAGAGTTGCTAT 803
Query 774 GGAAATGCAAGCTGAAGCTGAGCGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGA 833
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 804 GGAAATGCAAGCTGAAGCTGAACGTAAAAAGAGAGCCCAGATTCTTGAGTCTGAAGGAGA 863
Query 834 AAGGCAATCCCATATCAACATTGCTGATGGTAAGAAAAGTTCTGTAATCTTGGCATCTGA 893
| | ||| |||||||||| | ||||||||||||||||||||||||||||||| ||| ||
Sbjct 864 ACGCCAAGCCCATATCAATAGAGCTGATGGTAAGAAAAGTTCTGTAATCTTGGAATCAGA 923
Query 894 AGCAGCAAAGATGGACCAGGTGAATCGAGCACAAGGTGAGGCAGAAGCAATACTAGCTAG 953
||| |||||||||||||| || ||||| |||||||||||||| ||||||||| |||||||
Sbjct 924 AGCTGCAAAGATGGACCAAGTCAATCGTGCACAAGGTGAGGCTGAAGCAATATTAGCTAG 983
Query 954 AGCACAAGCAACTGCGAAAGGCCTGGTCTTGTTATCTCAGTCCCTCAAGGAAACTGGGGG 1013
|||||||||||| || || || |||| | || ||||||| |||||||||||| |||| ||
Sbjct 984 AGCACAAGCAACAGCCAAGGGACTGGCCATGGTATCTCAATCCCTCAAGGAAGCTGGTGG 1043
Query 1014 AGTAGAGGCGGCGAGTTTGAGAGTTGCAGAGCAATACATTACA-GCCTTCGGTAACATTG 1072
|| ||||| || |||||||||||||| |||||||||||| || || || || || ||||
Sbjct 1044 AGCGGAGGCTGCAAGTTTGAGAGTTGCGGAGCAATACATT-CAAGCTTTTGGCAAAATTG 1102
Query 1073 CCAAGGAGGGTACGATAATGTTGCTTCCAAGTGGTGCTTCA-AATCCTGCTAGCATGATT 1131
| ||||||||||| | |||| ||||||||||| || || | ||||||||| |||||||
Sbjct 1103 CTAAGGAGGGTACAACAATGCTGCTTCCAAGTTCTG-TTGACAATCCTGCTGGCATGATC 1161
Query 1132 GCTCAAGCTTTAACAATGTACAAAAGCCTTGTCATCAATGGTCC 1175
|||||||||||||||||||||||| || |||||| ||| |||||
Sbjct 1162 GCTCAAGCTTTAACAATGTACAAAGGC-TTGTCAACAAAGGTCC 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5