BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27590.2 Length=1038 Score E Sequences producing significant alignments: (Bits) Value Ahg945291 jgi|Araly1|945291|scaffold_701520.1 610 6e-174 > Ahg945291 jgi|Araly1|945291|scaffold_701520.1 Length=526 Score = 610 bits (330), Expect = 6e-174 Identities = 436/483 (90%), Gaps = 23/483 (5%) Strand=Plus/Plus Query 20 AAATACATAGTTAAAGTATAATGGGTGATCTTCAAATCGTGCCGGTGTACAACAAGGTGG 79 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATACATAGTTAACCTATAATGGGTGATCTTCAAATCGTGCCGGTGTACAACAAGGTGG 60 Query 80 AAGCACAGTACGTAGAAATGATGGTGCCTTTGTATTCTTACGGTTGCGAGAAGAAAGTCA 139 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 AAGCACAGTACGTAGAAATGATGGTGCCTTTGTATTCTTACGGCTGCGAGAAGAAAGTCA 120 Query 140 AGAGGGCTCTTTCTCATCTCAAAGGAATATATTCAGTGAAAGTAGACTACTACAATCAGA 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGAGGGCTCTTTCTCATCTCAAAGGAATATATTCAGTGAAAGTAGACTACTACAATCAGA 180 Query 200 AGGTGACGGTGTGGGGGATTTGTAACAAACTCGATGTGTTAGCGATGGTGAAAAAGAAGC 259 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 AGGTGACGGTGTGGGGGATTTGTAACAAGCTCGATGTGTTAGCGATGGTGAAAAAGAAGA 240 Query 260 GAAAAGAAGCTCGGTTTTGGAATGTAGAGGAAGAGGAGAAT--A-A-----T--A----A 305 |||||||||||||||||||||||||||||||| | | ||| | | | | | Sbjct 241 GAAAAGAAGCTCGGTTTTGGAATGTAGAGGAACATAATAATCCAGAGAGCGTTGATTGCA 300 Query 306 TC--CAGAGAG--CGTTGATGATTGCATTGTCGTAAAAGAAGACACTATTATTAAAACTT 361 || || | || ||||||||||||||| ||| | || ||||| |||| | ||| ||| Sbjct 301 TCGTCATAAAGGACGTTGATGATTGCATCGTCATGAAGGAAGATACTAGGA--AAA-CTT 357 Query 362 CAT-TTGATACCGATAAATCATCGGCGTTTTATACGTATTCTACAACGCCTCCGAGATTC 420 | | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 358 C-TGTTGATACCGATAAATCATCAGCGTTTTATACGTATTCTACGTCGCCTCCGAGATTT 416 Query 421 AGTATAAGACCTCCTATGTCACTTATTAGAACCTCTTCATTCACATGGAAAGCCGTGAAG 480 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 417 AGTATAAGACCTCCTTTGTCACTCATTAGAACCTCTTCATTCACATGGAAAGCCGTGAAG 476 Query 481 AAG 483 ||| Sbjct 477 AAG 479 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38618514921 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5