BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27590.2

Length=1038
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945291 jgi|Araly1|945291|scaffold_701520.1                        610    6e-174


> Ahg945291 jgi|Araly1|945291|scaffold_701520.1
Length=526

 Score =  610 bits (330),  Expect = 6e-174
 Identities = 436/483 (90%), Gaps = 23/483 (5%)
 Strand=Plus/Plus

Query  20   AAATACATAGTTAAAGTATAATGGGTGATCTTCAAATCGTGCCGGTGTACAACAAGGTGG  79
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAATACATAGTTAACCTATAATGGGTGATCTTCAAATCGTGCCGGTGTACAACAAGGTGG  60

Query  80   AAGCACAGTACGTAGAAATGATGGTGCCTTTGTATTCTTACGGTTGCGAGAAGAAAGTCA  139
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  61   AAGCACAGTACGTAGAAATGATGGTGCCTTTGTATTCTTACGGCTGCGAGAAGAAAGTCA  120

Query  140  AGAGGGCTCTTTCTCATCTCAAAGGAATATATTCAGTGAAAGTAGACTACTACAATCAGA  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGAGGGCTCTTTCTCATCTCAAAGGAATATATTCAGTGAAAGTAGACTACTACAATCAGA  180

Query  200  AGGTGACGGTGTGGGGGATTTGTAACAAACTCGATGTGTTAGCGATGGTGAAAAAGAAGC  259
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  181  AGGTGACGGTGTGGGGGATTTGTAACAAGCTCGATGTGTTAGCGATGGTGAAAAAGAAGA  240

Query  260  GAAAAGAAGCTCGGTTTTGGAATGTAGAGGAAGAGGAGAAT--A-A-----T--A----A  305
            |||||||||||||||||||||||||||||||| |  | |||  | |     |  |    |
Sbjct  241  GAAAAGAAGCTCGGTTTTGGAATGTAGAGGAACATAATAATCCAGAGAGCGTTGATTGCA  300

Query  306  TC--CAGAGAG--CGTTGATGATTGCATTGTCGTAAAAGAAGACACTATTATTAAAACTT  361
            ||  || | ||  ||||||||||||||| ||| | || ||||| ||||  |  ||| |||
Sbjct  301  TCGTCATAAAGGACGTTGATGATTGCATCGTCATGAAGGAAGATACTAGGA--AAA-CTT  357

Query  362  CAT-TTGATACCGATAAATCATCGGCGTTTTATACGTATTCTACAACGCCTCCGAGATTC  420
            | | ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| 
Sbjct  358  C-TGTTGATACCGATAAATCATCAGCGTTTTATACGTATTCTACGTCGCCTCCGAGATTT  416

Query  421  AGTATAAGACCTCCTATGTCACTTATTAGAACCTCTTCATTCACATGGAAAGCCGTGAAG  480
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  417  AGTATAAGACCTCCTTTGTCACTCATTAGAACCTCTTCATTCACATGGAAAGCCGTGAAG  476

Query  481  AAG  483
            |||
Sbjct  477  AAG  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38618514921


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5