BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27600.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945288 jgi|Araly1|945288|scaffold_701517.1 2174 0.0
> Ahg945288 jgi|Araly1|945288|scaffold_701517.1
Length=1447
Score = 2174 bits (1177), Expect = 0.0
Identities = 1377/1469 (94%), Gaps = 32/1469 (2%)
Strand=Plus/Plus
Query 87 AGAGC-AAAACTATCTAATTCCATGGCGTTCTCCCTCCTCTCTCCAATTCCTACCTCTGC 145
||||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 1 AGAGCAAAAAC--TCTAATTCCATGGCCTTCTCGCTCCTCTCTCCAATTCCTTCCTCTGC 58
Query 146 CTCTCtttttttCACTCTCTCCGCCATTACCGCTTCTAATAATGCTTCCTCCTCCTCTCT 205
|||||||| |||||||||||||||| | | |||||||| |||||||||||||
Sbjct 59 CTCTCTTTCTTTCACTCTCTCCGCC---A-----T-TAATAATG---CCTCCTCCTCTCT 106
Query 206 CTCCCGTCTTTACTCTTTATATCACCCCAAAGGAACCTTACGAACCAGAACCGCGACCTC 265
||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 107 CTCCCCTCTCTACTCTTTATATCATCCCAAAGGAACCTTACGAACCAGAACCGCGACCTC 166
Query 266 GTTTTTCGGAGCTTCTGGGAACTTGAGGATTGTTTCCATGGCGG------AGAATAGGCA 319
| |||||||||| ||||||||||||||||||| ||||||| ||| | ||||||||
Sbjct 167 GATTTTCGGAGCCTCTGGGAACTTGAGGATTGATTCCATGACGGATAATTATAATAGGCA 226
Query 320 ATTGGTTTGTAGGATTGGT-G--GCGGAGCCGGTGCTGAATTGGATGATATGGATGAAGG 376
||||||||||||||||||| | |||| | ||||| |||||||||||||||||||||| |
Sbjct 227 ATTGGTTTGTAGGATTGGTGGTTGCGGCGGCGGTGGTGAATTGGATGATATGGATGAATG 286
Query 377 TGAAATCCAGAGGATTGGAAATGAAGACGAAGACGACGATGAATTCATACAAGTCCATGC 436
|||||||||||| ||||||||| | |||||||| ||||| ||||||||||||||||||||
Sbjct 287 TGAAATCCAGAGAATTGGAAATCACGACGAAGATGACGACGAATTCATACAAGTCCATGC 346
Query 437 TAATAATTCCTCTGCTGCTTCGCCTGAGAGATGGGATGTTTTGGGTCTCGGCCAAGCCAT 496
| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 347 -----A-TCCTCTGCTGCTTCTCCTGAGAGATGGGATGTTTTGGGTCTTGGCCAAGCCAT 400
Query 497 GGTAGATTTCTCTGGAGTTGTGGATGATGAGTTTCTAAAGAAACTTGGTTTAGAAAAGGG 556
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 401 GGTAGATTTCTCTGGAGTTGTGGATGATGAGTTTCTAGAGAAACTGGGATTAGAAAAGGG 460
Query 557 AACAAGGAAACTGATTAATCACGAGGAGAGGGGTAAATTATTACAAGCAATGGATGGTTG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AACAAGGAAACTGATTAATCACGAGGAGAGGGGTAAATTATTACAAGCAATGGATGGTTG 520
Query 617 TAGCTATAAGGCGGCAGCTGGAGGCTCATTGTCCAACACTTTAGTTGCTCTCGCAAGATT 676
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 521 TAGCTATAAGGCGGCAGCTGGAGGATCATTGTCAAACACTTTAGTTGCTCTTGCAAGATT 580
Query 677 AGGTTCTCAATCCATCTGTGACCGGCCTTTGAATGTGGCAATGGCTGGCAGTATTGGAGG 736
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AGGTTCTCAATCCATCGGTGACCGGCCTTTGAATGTGGCAATGGCTGGCAGTATTGGAGG 640
Query 737 TGACCCTCTCGGTAGCTTTTACGGGACTAAACTACGACGAGCAAATGTAAATTTTCTTTC 796
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 641 TGACCCTCTCGGTAGCTTTTACGGGACTAAACTACGTCGAGCAAATGTAAATTTTCTTTC 700
Query 797 TGCTCCAATCAAGGACGGAACAACAGGAACAGTGATAGTTCTCACAACTCCTGATGCACA 856
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 701 TGCTCCAATCAAGGATGGAACAACGGGAACAGTGATAGTTCTCACAACTCCTGATGCCCA 760
Query 857 ACGTACTATGCTTGCATATCAGGGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGC 916
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 761 ACGAACTATGCTTGCATATCAGGGAACATCTTCTGTCGTTAATTATGATTCTTGTTTGGC 820
Query 917 TAGTTTGATAGCCAAGACAAATGTCTTTGTTGTGGAAGGCTATTTGTTTGAGCTTCCTGA 976
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TAGCTTGATAGCCAAGACAAATGTCTTTGTTGTGGAAGGCTATTTGTTTGAGCTTCCTGA 880
Query 977 TACTATAAGAACCATAACAAAAGCCTGCGAAGAAGCCCACAGAAACGGGGCACTTGTTGC 1036
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 881 TACTATAAGGACCATAACAAAAGCCTGCGAAGAAGCCCACAGAAATGGGGCACTTGTTGC 940
Query 1037 TGTGACAGCATCAGATGTGTCCTGCATAGAGAGGCATTATGATGATTTCTGGGACATTGT 1096
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TGTGACAGCATCAGATGTATCCTGCATAGAGAGGCATTATGATGATTTCTGGGACATTGT 1000
Query 1097 GGGGAACTATGCGGATATTGTATTTGCAAATAGCGATGAAGCAAGAGCGTTTTGTCACTT 1156
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1001 GGGGAACTATGCAGATATTGTATTTGCAAACAGCGATGAAGCAAGAGCGTTTTGTCACTT 1060
Query 1157 TTCCGCAGAGGAAAGTCCAATTTCAGCGACAAGATACATGAGCCACTTTGTTCCGTTTGT 1216
|||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1061 TTCCGCTGAGGAAAGCCCAATTTCAGCGACAAGGTACATGAGCCACTTTGTTCCATTTGT 1120
Query 1217 TTCTGTTACCGATGGAATCAACGGGTCATATATTGGAGTAAAAGGAGAGGCCATCTACAT 1276
|| || || |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1121 ATCGGTGACTGATGGAATCAACGGGTCATACATTGGAGTAAAAGGAGAGGCCATATACAT 1180
Query 1277 TCCTCCGTCCCCATGCGTGCCAGTTGATACATGTGGTGCTGGAGATGCATATGCTTCAGG 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TCCTCCGTCCCCATGCGTGCCAGTTGATACATGTGGTGCTGGAGATGCATATGCTTCAGG 1240
Query 1337 GATCTTATACGGTATCTTGAGGGGTGTCTCTGACTTGAAAGGAATGGGAGATATGGCTGC 1396
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GATCTTATACGGTATCTTGAGAGGTGTCTCTGACTTGAAAGGAATGGGAGATATGGCTGC 1300
Query 1397 AACGATTGCAGCAACTGTGGTGGGTCAACAAGGAACCAGGCTTAGGGTTCAGGACGCGGT 1456
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1301 AACGATTGCAGCAACAGTGGTGGGTCAACAAGGAACCAGGCTTAGGGTTCAGGACGCTGT 1360
Query 1457 TGAGCTGGCTCGATCACATGCCTTCCGTCTCAATGGTTCTGGTGTTCGAACAGATGTTGG 1516
|||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1361 TGAGCTTGCTCGATCACATGCTTTCCGTCTCAACGGATCTGGTGTTCGAACAGATGTTGG 1420
Query 1517 GTCTTGATGAAACCTCTTTAGCTTGTGAT 1545
|||||||||||| |||| ||||||||||
Sbjct 1421 GTCTTGATGAAATCTCT--AGCTTGTGAT 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5