BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27610.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492028 jgi|Araly1|492028|fgenesh2_kg.7__1461__AT4G27610.2 1797 0.0
Ahg945285 jgi|Araly1|945285|scaffold_701514.1 750 0.0
> Ahg492028 jgi|Araly1|492028|fgenesh2_kg.7__1461__AT4G27610.2
Length=1543
Score = 1797 bits (973), Expect = 0.0
Identities = 1172/1264 (93%), Gaps = 30/1264 (2%)
Strand=Plus/Plus
Query 345 AGGTTATGTTTGGATGATAGATACATTTTGA-CTTTCTCATACAATGAGTACACGAAGAA 403
||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||||
Sbjct 291 AGGTTATGTTTGGATGATAGAGACATTTT-AGCTTTCTCTTACAATGAGTACACGAAGAA 349
Query 404 ATGGCATTTCCAAGCATCAGCGAGGTGATAAATTTTGTGGTGA-AGGGCCAAACTGGATA 462
||||||| |||||||||||||||| |||||||||||||||||| | ||||||| ||||||
Sbjct 350 ATGGCATCTCCAAGCATCAGCGAGCTGATAAATTTTGTGGTGATA-GGCCAAATTGGATA 408
Query 463 CTAATTGCAGGGGGTGCATTGTTGAGCACATTGTCCATTCGCTTTGGATACAAGCTAAAG 522
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 409 CTAATTGCTGGGGGTGCCTTGTTGAGCACATTGTCCATTCGCTTTGGCTACAAGCTAAAG 468
Query 523 CAGTCGCTTGATTCGAAACCTCAATCAAATGGCTCTGCTGGATTAAAACCTAATGGAACA 582
||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 469 CAGTCGCTTGATTGGAAACCTCAATCGAATGGCTCTGCTGGAATAAAACCTAATGGAACA 528
Query 583 TCTGAGAGGCAAAAATCTACAAGCTGTTGCTTACACTCTACCACATCTTCCTGTACACAA 642
|||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 529 TCTGAGAGGCAAAAATCTACAAGCTGTTGCTTGCACTCTAACTCATCTTCCTGTACACAC 588
Query 643 AATAATGATTTTTGTTGCTTCCGCTCCATTCCAGGAACTGAGAGTGTGGAAGGAAAAGAG 702
|||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 589 AATAATGATTATTGTTGCTTCCGCTCCATTCCAGGAACTGAGAATGTGGAGGGAAAAGAG 648
Query 703 GTGACAAGCGAGCAAATGATATCCGCATCTGACACTTCACTGCCTCTTGTGACAGTTCCT 762
||||||| |||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 649 GTGACAAACGAGCAAATGATATCCGCATCTGATACTTCACTGCCTCTTGCGAAAGTTCCT 708
Query 763 GCTCCATC---GAGCAAAGAGAATGGAGTCATGTGGGCAACTTCTCCTGATCGCCTGGAA 819
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GCTCCATCATTTAGCAAAGAGAATGGAGTCATGTGGGCAACTTCTCCTGATCGCCTGGAA 768
Query 820 CTTCCCCCAAGACCATACAATCACAATTCAAACTGCTCAGATTCTCCTTGCGTATCTGAA 879
|||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 769 CTTCCCCCAAGACCATACAATCACCATTCAAACTGCTCTGATTCTCCTTGTGTATCTGAA 828
Query 880 ACCAGCTCAGACATTTTCAGCAAACGAGAAGTAATACAGAAACTAAGGCAGCAGCTGAAG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ACCAGCTCAGACATTTTCAGCAAACGAGAAGTAATACAGAAACTAAGGCAGCAGCTGAAG 888
Query 940 AGACGGGATGACATGATACAGGAAATGCAAGAACAGATTCTAGAGCTGCAAAACTCGTAT 999
||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 889 AGACGCGATGACATGATTCTGGAAATGCAGGAACAGATTCTAGAGCTGCAAAACTCGTAT 948
Query 1000 AACGCACAGACGGCACACTCAAGCCATCTCCAGGCACAGCTAGACACACTGAACAGAGAT 1059
||||| |||| | ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 949 AACGCGCAGATGTCACACTCTAGCCATCTACAGGCACAGCTAGACACACTGAACAGAGAT 1008
Query 1060 CTGTTTGAATCAGAAAGAGAAGTTCAAAGACTGAGAAAGGCAATTGCTGATCACAGCGTG 1119
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1009 CTGTTTGAATCAGAAAGAGAAGTTCAGAGACTGAGAAAGGCGATAGCTGATCACAGCGTG 1068
Query 1120 GGATGTGGCGCGGACAGCAATGGCAAGACATCTCCGGTTGGACCTTGGA------ATG-G 1172
||||| | || |||||||||||||||||||| ||||||||||||| ||| |
Sbjct 1069 GGATGCA-CT-GGT-AGCAATGGCAAGACATCTCCAGTTGGACCTTGGAGCGGCCATGTG 1125
Query 1173 --CGGGTTTATGGACAGCGAAAGCAATTATGAGTCACAAGAAAAGAGCCTAAGGGATGGA 1230
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1126 GACGGGTTTATGGACAGCGAAAGCAATTATGAGTCACAGGAAAAGAGCCTAAGGGATGGA 1185
Query 1231 GAAAGAGTAGAGATGTTGAGAAAGGAAGTGAGTGAGCTTAAAGAAGTGATAGATGGGAAA 1290
||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1186 GAAAGAGTAGAGATGTTGAGAAAAGAAGTGAGTGAGCTTAAAGAGGTGATAGACGGGAAG 1245
Query 1291 GAGTATCTACTTAGAAGCTATAAGGAGCAGAAGATTGAGCTTTCGCAGAAGGTAAAAGAG 1350
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1246 GAGTATCTACTTAGAAGCTATAAGGAGCAGAAGATAGAGCTTTCACAGAAGGTGAAAGAG 1305
Query 1351 TTGCAGCAGAGACTGGACTCACAGCTCCAAAACTTATTGTAGGTGGAAAGGTTAGGCATT 1410
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1306 TTGCAGCAGAGACTGGACTCACAGCTCCCAAACATATTGTAGGTGGAAAGGTTAGGCATT 1365
Query 1411 GTGCATACTTGCGTCTCTTA-ttttttt-ttt-cggttctttttcctttttcGAGAAAAT 1467
|||||||||||||||| || ||||||| ||| |||||||||| ||||||||||||||||
Sbjct 1366 GTGCATACTTGCGTCTGTTCCTTTTTTTGTTTTCGGTTCTTTT-CCTTTTTCGAGAAAAT 1424
Query 1468 GAATCTTAGTATGTACTAAGAACGGTGGAGATCAAGAttttcaggttctttctggctttc 1527
|||||||| | || ||||||||| ||||||| ||||||||||||||||||||||||| |
Sbjct 1425 GAATCTTA-T--GTCCTAAGAACGTTGGAGATGAAGATTTTCAGGTTCTTTCTGGCTT-C 1480
Query 1528 tgctttcgttttt-gaatgtcttgattctg-ttttttctttcAACATTTGGTGTAAAGGT 1585
|||||||||||| ||||||||||||| || |||||| ||| |||||||||||||||||
Sbjct 1481 AGCTTTCGTTTTTTGAATGTCTTGATTTTGGTTTTTTTTTT-AACATTTGGTGTAAAGGA 1539
Query 1586 AAAT 1589
||||
Sbjct 1540 AAAT 1543
Score = 311 bits (168), Expect = 1e-83
Identities = 226/252 (90%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 29 TCTCTTCAACCTCTTCCCCTCCACTTTGCTTCTCTCTCTCCTCCCCGGGGGTTTTACAGT 88
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 65 TCTCTTCTACCTCTTCCCCTCCACTTTGCTTCTCTCTTTCCTCTCCGGGGGTTTTACTGT 124
Query 89 CATATCATCGTCGGAGACTCTGCGATTCTTCACGGAATCGTATTTCTCTCTCAGCGAttt 148
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 125 AATATCATCGTCGGAGACTCTGCGATTCTTCACGGAATCTTATTTCTCTCTCTGCGATTT 184
Query 149 ttttCGATTCTCGAAGCTGCAAGGACCACCCATCAAACATTGAAACTCAAGCGGGAGAAA 208
|| |||||||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct 185 TT--CGATTCTCGAAGCTGCAAGGAC-A---A--A--CATTGAAACTCAAGCGGGAGAAC 234
Query 209 TTTTCTGGCTCGGGAGGGAAACTATGGAGCCCTAATGCCCATTTTCTGCTGTCTATGAGG 268
|||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 235 TTTTCTTTCTGGGGAGG-AAACTATGGAGCCCTAATGCTCATTTTCTGCTGTCTATGAGG 293
Query 269 GT-TGTTGGGAT 279
| |||| ||||
Sbjct 294 TTATGTTTGGAT 305
> Ahg945285 jgi|Araly1|945285|scaffold_701514.1
Length=995
Score = 750 bits (406), Expect = 0.0
Identities = 807/991 (81%), Gaps = 66/991 (7%)
Strand=Plus/Plus
Query 442 GGTGAAGGGCCAAACTGGATACTAATTGCAGGGGGTGCATTGTTGAGCACATTGTCCATT 501
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 51 GGTGAAGGACCAAACTGGATTCTAATTGCAGGGGGTGCCTTGTTGAGCACATTGTCCATT 110
Query 502 CGCTTTGGATACAAGCTAAAGCAGTCGCTTGATTCGAAA---CCTCAATCAAATGGCTCT 558
|||||||| ||||| |||||||||| |||| || ||| ||||| || |||| | ||
Sbjct 111 CGCTTTGGCTACAAATTAAAGCAGTCTATTGACTCAAAACCTCCTCATTCCAATGCCACT 170
Query 559 GCTGGATTAAAACCTAATGGAACATCTG--AGAGGCAAAAATCTAC-AAGCTGTTGCTTA 615
|||||||||||||| ||||||||||||| ||||| || |||| | || || |||||
Sbjct 171 GCTGGATTAAAACCCAATGGAACATCTGACAGAGG--AAGATCT-CTGAGATGCTGCTTG 227
Query 616 CACTCTACCACATCTTCCTGT-ACACAAAATAATGATTTTTGTTGCTTCCGCTCCATTCC 674
|| |||| |||| ||||| | || |||| ||| ||| ||||| | || || |||
Sbjct 228 CATTCTAATGTATCTCCCTGTGA-ACGGAATACTGA---TTGCTGCTTTCACTGCACTCC 283
Query 675 AGGAACTGAGAGTGTGGAAGGAAAAGA-GGTGACAAGCGAGCAAAT-G-A-TATCCGCAT 730
|||||||||| || ||||||||| | | | |||| |||||||| | | | | | ||
Sbjct 284 CGGAACTGAGAATGGGGAAGGAAATCATGCT-ACAAATGAGCAAATGGCAGTGT-C-CA- 339
Query 731 CTGACACTTCACTGCCTCTTGTGACAGTTCCTGC-TC--CATCGAGCAAAGAGAATGGAG 787
| ||||| |||||| |||| ||||||||||| || ||| ||||||||||||| ||
Sbjct 340 --G-TACTTCTCTGCCTATTGTAACAGTTCCTGCTTCATCATATAGCAAAGAGAATGCAG 396
Query 788 TCATGTGGGCAACTTCTCCTGATCGCCTGGAACTTCC-CCCAAGACCATACAATCACAAT 846
|||||||||| |||||||||||| ||||||| | || || ||||||| ||||| ||
Sbjct 397 GCATGTGGGCATCTTCTCCTGATCACCTGGAAGTGCCGATGAA-ACCATACCATCACCAT 455
Query 847 TCAAACTGCTCAGATTCTCCTTGCGTATCTGAAACCAGCTCAGACATTTTCAGCAAACGA 906
|| | |||||||||||||||||||||||||||| || | |||||||| |||||||| |||
Sbjct 456 TCGACCTGCTCAGATTCTCCTTGCGTATCTGAATCCGGTTCAGACATCTTCAGCAAGCGA 515
Query 907 GAAGTAATACAGAAACTAAGGCAGCAGCTGAAGAGACGGGATGACATGATACAGGAAATG 966
||||||||||||||||| ||||| ||||| |||||||| ||||||||| || ||||||
Sbjct 516 GAAGTAATACAGAAACTGAGGCAACAGCTAAAGAGACGTGATGACATGGTAGTTGAAATG 575
Query 967 CAAGAACAGATTCTAGAGCTGCAAAACTCGTAT-AACGCACAGACGGCACACTCAAGCCA 1025
|| |||||||||||||||||||||||||| | | ||||| |||| || |||||| |||||
Sbjct 576 CAGGAACAGATTCTAGAGCTGCAAAACTC-TCTTAACGCCCAGATGGGACACTCTAGCCA 634
Query 1026 TCTCCAGGCACAGCTAGACACA-CTGAACAGAGATCTGTTTGAATCAGAAAGAGAAGTTC 1084
| |||| ||||||||||| || | ||||| || ||||||||||||||||||||||| |
Sbjct 635 TGTCCAAACACAGCTAGACGCAACA-AACAGGGACCTGTTTGAATCAGAAAGAGAAGTCC 693
Query 1085 AAAGACTGAGAAAGGCAATTGCTGATCACAGCGTGGGATGTGGCGCGGACAGCAATGGCA 1144
| || |||||||||||||| ||||||||| |||||||| | ||| || || |
Sbjct 694 AGAGGCTGAGAAAGGCAATCGCTGATCACTGCGTGGGA-----C----ACA-CA--GGTA 741
Query 1145 AGACATCTCCGGTTGGACCTTGGAATGGCGGGTTTATGGACAGCGAAAGCAATTATGAGT 1204
| || | ||||||| | ||||| | | | ||||||||| ||| || ||||
Sbjct 742 -G-CAA-T--GGTTGGA----G---TGGCGA-TGT--GAACAGCGAAAACAACTACGAGT 786
Query 1205 CACAAGAAAA-GAGCCTAAGGGATGGAGAAAGAGTAGAGATGTTGAGAAAGGAAGTGAGT 1263
||| |||||| | | ||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 787 CACCAGAAAATG-GAATAAGGGATGGAGAAAGAATAGAGATGTTGAGAAAAGAAGTGGGT 845
Query 1264 GAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGAAGCTATAAGGAGCAGAAG 1323
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 846 GAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGGAGCTATAAGGAGCAGAAA 905
Query 1324 ATTGAGCTTTCGCAGAAGGTAAAAGAGTTGCAGCAGAGACTGGACTCACAGCTCCAAAAC 1383
| ||||||| |||||| || ||||||||||||||||||||||| |||||||||| ||||
Sbjct 906 ACGGAGCTTTTGCAGAAAGTCAAAGAGTTGCAGCAGAGACTGGATTCACAGCTCCCAAAC 965
Query 1384 -TTATTGTAGGTGGA-AAGGTTAGGCATTGT 1412
|| ||||||| | | |||||||||||||||
Sbjct 966 ATT-TTGTAGGCGAAGAAGGTTAGGCATTGT 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5