BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27620.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945285 jgi|Araly1|945285|scaffold_701514.1 1489 0.0
Ahg492028 jgi|Araly1|492028|fgenesh2_kg.7__1461__AT4G27610.2 643 0.0
> Ahg945285 jgi|Araly1|945285|scaffold_701514.1
Length=995
Score = 1489 bits (806), Expect = 0.0
Identities = 901/948 (95%), Gaps = 2/948 (0%)
Strand=Plus/Plus
Query 267 GCGGTGAAGGACCAAATTGGA-TCTTAATTGCTGGGGGTGCTTTGTTGAGTACATTGTCC 325
|||||||||||||||| |||| || ||||||| |||||||| |||||||| |||||||||
Sbjct 49 GCGGTGAAGGACCAAACTGGATTC-TAATTGCAGGGGGTGCCTTGTTGAGCACATTGTCC 107
Query 326 ATTCGTTTTGGCTACAAATTAAAGCAGTCTATTGACTCCAAACCTCCTCATTCCAATGCC 385
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 108 ATTCGCTTTGGCTACAAATTAAAGCAGTCTATTGACTCAAAACCTCCTCATTCCAATGCC 167
Query 386 ACTGGTGGATTAAAACCTAATGGAACAACCGACAGAGGAAGATTTAAGGGCTGCTGCTTG 445
|||| |||||||||||| ||||||||| | ||||||||||||| | | | |||||||||
Sbjct 168 ACTGCTGGATTAAAACCCAATGGAACATCTGACAGAGGAAGATCTCTGAGATGCTGCTTG 227
Query 446 CATTCTAATGCATCACCCTGTGAAAGGAATAATGATTGTTGCTTTCACTGCACTCCCGGA 505
|||||||||| ||| ||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct 228 CATTCTAATGTATCTCCCTGTGAACGGAATACTGATTGCTGCTTTCACTGCACTCCCGGA 287
Query 506 ACTGAGAATGGGGAAGGAAATCATGCTACAAATGAGCAAATGGCAGAGTCCAGTACTTCT 565
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 288 ACTGAGAATGGGGAAGGAAATCATGCTACAAATGAGCAAATGGCAGTGTCCAGTACTTCT 347
Query 566 CTGCCTCTTGTGACAGTTCCTGCTTCATCATATAGCAAAGAGAGTGCAGTCGTATGGGGA 625
|||||| |||| ||||||||||||||||||||||||||||||| ||||| | | |||| |
Sbjct 348 CTGCCTATTGTAACAGTTCCTGCTTCATCATATAGCAAAGAGAATGCAGGCATGTGGGCA 407
Query 626 TCTTCTCCTGACCACCTGGAAGTGCCGATGAAAGCATACCATCAACATTCGACCTGCTCA 685
||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 408 TCTTCTCCTGATCACCTGGAAGTGCCGATGAAACCATACCATCACCATTCGACCTGCTCA 467
Query 686 GATTCTCCTTGCGTATCTGAATCCGGCTCAGACATCTTCAGCAAGCGAGAAGTAATACAG 745
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 468 GATTCTCCTTGCGTATCTGAATCCGGTTCAGACATCTTCAGCAAGCGAGAAGTAATACAG 527
Query 746 AAACTGAGGCAACAGCTGAAGAGACGTGACGACATGATAGTTGAAATGCAGGAACAGATT 805
||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 528 AAACTGAGGCAACAGCTAAAGAGACGTGATGACATGGTAGTTGAAATGCAGGAACAGATT 587
Query 806 CTAGAGCTGCAAAACTCGCTAAACGCCCAGATGGGACACTCTAGCCATATCCAAACACAG 865
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 588 CTAGAGCTGCAAAACTCTCTTAACGCCCAGATGGGACACTCTAGCCATGTCCAAACACAG 647
Query 866 CTAGACGCAACAAACAGGGACCTGTTTGAATCAGAAAGAGAAGTCCAGAGACTGAGAAAG 925
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 648 CTAGACGCAACAAACAGGGACCTGTTTGAATCAGAAAGAGAAGTCCAGAGGCTGAGAAAG 707
Query 926 GCAATCGCTGATCACTGCGTGGGACACACAGGTAGCAATGGTTGGAGTGGCGATGTGAAC 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GCAATCGCTGATCACTGCGTGGGACACACAGGTAGCAATGGTTGGAGTGGCGATGTGAAC 767
Query 986 AGCGAAAACAACTACGAGTCACCAGAAAATGGAATAAGGGATGGAGAAAGAATAGAGATG 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AGCGAAAACAACTACGAGTCACCAGAAAATGGAATAAGGGATGGAGAAAGAATAGAGATG 827
Query 1046 TTGAGAAAAGAAGTGGGTGAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGG 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TTGAGAAAAGAAGTGGGTGAGCTTAAAGAAGTGATAGATGGGAAAGAGTATCTACTTAGG 887
Query 1106 AGCTATAAGGAGCAGAAAACAGAGCTTTTGCAGAAGGTAAAAGAGTTGCAGCAGAGACTG 1165
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 888 AGCTATAAGGAGCAGAAAACGGAGCTTTTGCAGAAAGTCAAAGAGTTGCAGCAGAGACTG 947
Query 1166 GACTCGCAGCTCCCAAACATTTTGTAGGTGAAGAAGGTTAGGCATTGT 1213
|| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 948 GATTCACAGCTCCCAAACATTTTGTAGGCGAAGAAGGTTAGGCATTGT 995
> Ahg492028 jgi|Araly1|492028|fgenesh2_kg.7__1461__AT4G27610.2
Length=1543
Score = 643 bits (348), Expect = 0.0
Identities = 674/825 (82%), Gaps = 47/825 (6%)
Strand=Plus/Plus
Query 165 ATGAGTGTTAAGGTTGGATGATAGAAGACATTTTTTGACCTTCTCTTACAATGACTACAC 224
||||| |||| | ||||||||||| ||||| |||| | | |||||||||||||| |||||
Sbjct 288 ATGAG-GTTATGTTTGGATGATAG-AGACA-TTTTAG-CTTTCTCTTACAATGAGTACAC 343
Query 225 GAAGAAATGGCGTTTCCAGGCATCAGCG-GTTTGA-GAGTTTTCGCGGTGA-AGGACCAA 281
||||||||||| | |||| ||||||||| | ||| | |||| | ||||| ||| ||||
Sbjct 344 GAAGAAATGGCATCTCCAAGCATCAGCGAG-CTGATAAATTTT-GTGGTGATAGG-CCAA 400
Query 282 ATTGGAT-CTTAATTGCTGGGGGTGCTTTGTTGAGTACATTGTCCATTCGTTTTGGCTAC 340
||||||| | |||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 401 ATTGGATAC-TAATTGCTGGGGGTGCCTTGTTGAGCACATTGTCCATTCGCTTTGGCTAC 459
Query 341 AAATTAAAGCAGTCTATTGACTCCAAACCTCCTCATTCCAATGCCACTGGTGGATTAAAA 400
|| |||||||||| |||| | ||| ||||| || |||| | ||| |||| |||||
Sbjct 460 AAGCTAAAGCAGTCGCTTGATTGGAAA---CCTCAATCGAATGGCTCTGCTGGAATAAAA 516
Query 401 CCTAATGGAACAACCGACAGAGG--AAGATTTA-AGGGCTGCTGCTTGCATTCTAA-TGC 456
|||||||||||| | | ||||| || || || | |||| |||||||| ||||| | |
Sbjct 517 CCTAATGGAACATCTG--AGAGGCAAAAATCTACA-AGCTGTTGCTTGCACTCTAACT-C 572
Query 457 ATCACCCTGTGA-A-AGGAATAATG---ATTGTTGCTTTCACTGCACTCCCGGAACTGAG 511
||| ||||| | | | ||||||| |||||||||| | || || ||| |||||||||
Sbjct 573 ATCTTCCTGT-ACACA-CAATAATGATTATTGTTGCTTCCGCTCCATTCCAGGAACTGAG 630
Query 512 AATGGGGAAGGAAATCATGCT-ACAAATGAGCAAATGGCAGAGT-C-CA---G-TACTTC 564
|||| ||| ||||| | | | ||||| |||||||| | | | | | || | ||||||
Sbjct 631 AATGTGGAGGGAAAAGA-GGTGACAAACGAGCAAAT-G-ATA-TCCGCATCTGATACTTC 686
Query 565 TCTGCCTCTTGTGACAGTTCCTGCTTCATCATATAGCAAAGAGAGTGCAGTCGTATGGGG 624
|||||||||| || |||||||||| |||||| ||||||||||| || |||| | ||||
Sbjct 687 ACTGCCTCTTGCGAAAGTTCCTGCTCCATCATTTAGCAAAGAGAATGGAGTCATGTGGGC 746
Query 625 ATCTTCTCCTGACCACCTGGAAGTGCCGATGAA-AGCATACCATCAACATTCGACCTGCT 683
| |||||||||| | ||||||| | || || | ||||| |||| ||||| | |||||
Sbjct 747 AACTTCTCCTGATCGCCTGGAACTTCC-CCCAAGACCATACAATCACCATTCAAACTGCT 805
Query 684 CAGATTCTCCTTGCGTATCTGAATCCGGCTCAGACATCTTCAGCAAGCGAGAAGTAATAC 743
| ||||||||||| ||||||||| || |||||||||| |||||||| |||||||||||||
Sbjct 806 CTGATTCTCCTTGTGTATCTGAAACCAGCTCAGACATTTTCAGCAAACGAGAAGTAATAC 865
Query 744 AGAAACTGAGGCAACAGCTGAAGAGACGTGACGACATGATAGTTGAAATGCAGGAACAGA 803
||||||| ||||| |||||||||||||| || |||||||| | ||||||||||||||||
Sbjct 866 AGAAACTAAGGCAGCAGCTGAAGAGACGCGATGACATGATTCTGGAAATGCAGGAACAGA 925
Query 804 TTCTAGAGCTGCAAAACTCGCTA-AACGCCCAGATGGGACACTCTAGCCATATCCAAACA 862
|||||||||||||||||||| || ||||| |||||| ||||||||||||| | || ||
Sbjct 926 TTCTAGAGCTGCAAAACTCG-TATAACGCGCAGATGTCACACTCTAGCCATCTACAGGCA 984
Query 863 CAGCTAGACGCAACA-AACAGGGACCTGTTTGAATCAGAAAGAGAAGTCCAGAGACTGAG 921
||||||||| || | ||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 985 CAGCTAGACACA-CTGAACAGAGATCTGTTTGAATCAGAAAGAGAAGTTCAGAGACTGAG 1043
Query 922 AAAGGCAATCGCTGATCACTGCGTGGGACACACAGGTAGCAATGG 966
|||||| || ||||||||| |||||||| ||| |||||||||||
Sbjct 1044 AAAGGCGATAGCTGATCACAGCGTGGGATGCACTGGTAGCAATGG 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5