BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27630.3
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945284 jgi|Araly1|945284|scaffold_701513.1 1286 0.0
Ahg475503 jgi|Araly1|475503|fgenesh2_kg.2__633__AT1G64990.1 798 0.0
Ahg945513 jgi|Araly1|945513|scaffold_701742.1 158 2e-37
> Ahg945284 jgi|Araly1|945284|scaffold_701513.1
Length=1444
Score = 1286 bits (696), Expect = 0.0
Identities = 746/771 (97%), Gaps = 0/771 (0%)
Strand=Plus/Plus
Query 95 TGTTTCCTTATTAGAGAGAGATGGGTTACGGATGGGGGATCTTCGAGGGAATGTTGGTGA 154
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TGTTTCCTTGTTAGAGAGAGATGGGTTACGGATGGGGGATCTTCGAGGGAATGCTGGTGA 60
Query 155 TTGGATCTCTGTGTCTCTTAGGATCGGCTGGTCTATGGTTTCTCAACCGGAGGCTTTACA 214
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 61 TTGGATCTCTGTGTCTCTTAGGATCGGCCGGTCTCTGGTTTCTCAATCGGAGGCTTTACA 120
Query 215 AAGAGTACGAAGAGAAGCGAGCTTTGGTTCAAATCATTTTCAGCGTCGTCTTCGCCTTCT 274
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 AGGAGTACGAAGAGAAGCGAGCTTTGGTTCAAATCATTTTCAGCGTCGTCTTCGCTTTCT 180
Query 275 CTTGCAACCTTTTACAGCTTGTTCTCTTCGAAATCATCCCTGTTTTATCTAGAGAGGCAA 334
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGCAACCTTTTACAGCTCGTTCTCTTCGAAATCATCCCTGTTTTATCTAGAGAGGCAA 240
Query 335 GGATGGTAAACTGGAAGGTGGATCTCTTTTGTTTGATAGTGCTCCTTGTTTTCATGTTAC 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATGGTAAACTGGAAGGTGGATCTCTTTTGTTTGATAGTGCTCCTTGTTTTCATGTTAC 300
Query 395 CTTATTATCATTGCTATTTGATGCTTCGTAACACTGGTGTAAGAAGAGAGCGTGCTGCTG 454
|||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||
Sbjct 301 CTTATTATCATTGCTATTTGATGCTTCGCAATACTGGTGTTAGAAGGGAACGTGCTGCTG 360
Query 455 TTGGGGCCTTGTTATTCTTGACAGCGTTCCTTTATGCTTTCTGGCGCATGGGAATACATT 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTGGGGCCTTGTTATTCTTGACAGCGTTCCTTTATGCTTTCTGGCGCATGGGAATTCATT 420
Query 515 TTCCTATGCCTTCAGACAAAGGTTTCTTTTCAATGCCTCAGCTGGTCAGCAGAATCGGGG 574
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 TTCCTATGCCTTCGGACAAAGGTTTCTTTTCAATGCCTCAACTGGTCAGCAGAATCGGGG 480
Query 575 TCATTGGTGTGACCCTCATGGCCGTCTTATCGGGTTTTGGAGCTGTAAATTTGCCCTACA 634
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 481 TCATTGGTGTGACCCTCATGGCCGTCTTATCGGGTTTTGGAGCTGTTAATCTGCCCTACA 540
Query 635 GTTATATATCGCTCTTTATTAGGGAGATTGAAGAATCAGAAATAAAATCGCTGGAAAGGC 694
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTATATATCGCTCTTCATTAGGGAGATTGAAGAATCAGAAATAAAATCGCTGGAAAGGC 600
Query 695 AACTGATGCAATCAATGGAGACTTGCATAGCTAAGAAGAAGAAAATTCTTTTATGTCAAG 754
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 AACTGATGCAATCAATGGAGACTTGCATAGCTAAGAAGAAGAAAATTATTTTATGTCAAG 660
Query 755 TTGAGGTGGAACGAAGTCTAGTATCAGAAGAGCATCAAAAGGGTAAATCTTTCTTTAGAA 814
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 661 TGGAGGTGGAACGAAGTCTAGTATCAGAAGAGCATCAAAACGGTAAATCTTTCTTCAGAA 720
Query 815 GATTTGTCGGGACTGTTGTGCGGTCGGTTCAAGATGACCAAAAGGAGCAAG 865
|||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 721 GATTTGTCGGGACTGTTGTGCGATCGGTTCAAGATGACCAGAAGGAGCAAG 771
Score = 1149 bits (622), Expect = 0.0
Identities = 654/670 (98%), Gaps = 0/670 (0%)
Strand=Plus/Plus
Query 936 AGATATAAAACTAATGGAGGCAGAGGTGGAAGGTTTAGAAGAGCTGTCAAAGCAGCTATT 995
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGATATTAAACTAATGGAGGCGGAGGTGGAAGGTTTAGAAGAGCTGTCAAAGCAGCTATT 829
Query 996 CTTGGAAATTTATGAACTCCGCCAAGCAAAGGATGCTGCTGCTTTTTCTCGAACTTGGAA 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTTGGAAATTTATGAACTCCGCCAAGCAAAGGATGCTGCTGCTTTTTCTCGAACTTGGAA 889
Query 1056 GGGTCATGTGCAGAACTTTCTTGGCTATGCGTGTTCCATTTACTGTGTGTATAAGATGTT 1115
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGGTCATGTGCAGAACTTACTTGGCTATGCGTGTTCCATTTACTGTGTGTATAAGATGTT 949
Query 1116 AAAGTCTCTACAAAGTGTCGTTTTCAAGGAGGCGGGCACGAAAGATCCTGTCACGATGAT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AAAGTCTCTACAAAGTGTCGTTTTCAAGGAGGCGGGCACGAAAGATCCTGTCACGATGAT 1009
Query 1176 GATCAGCATATTCTTGCAGTTCTTTGATATAGGAGTAGATGCAGCATTGCTCTCACAGTA 1235
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1010 GATCAGCATATTCTTGCAGTTCTTTGATATAGGAGTAGATGCGGCATTGCTCTCACAGTA 1069
Query 1236 TATTTCCCTGTTATTTATTGGGATGTTGATCGTGATATCAGTGAGGGGATTCTTGACGAA 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1070 TATTTCCCTGTTATTTATTGGGATGTTGATCGTGATATCAGTGAGGGGATTCTTGACAAA 1129
Query 1296 TCTGATGAAGTTCTTCTTTGCAGTGTCGAGGGTTGGAAGTGGATCTTCAAGCAATGTTGT 1355
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1130 TCTGATGAAGTTCTTCTTTGCAGTGTCGAGGGTAGGGAGTGGATCTTCAAGCAATGTTGT 1189
Query 1356 GCTCTTCCTATCAGAAATCATGGGAATGTACTTTTTGTCTTCCATTCTTCTTATAAGAAA 1415
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GCTTTTTCTATCTGAAATCATGGGAATGTACTTTTTGTCTTCCATTCTTCTTATAAGAAA 1249
Query 1416 AAGCTTGAGAAATGAGTACAGAGGGATAATAACAGATGTATTAGGCGGAGATATTCAGTT 1475
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1250 AAGTTTGAGAAATGAGTACAGAGGGATAATAACAGATGTGTTAGGCGGAGATATTCAGTT 1309
Query 1476 TGATTTCTATCATCGATGGTTTGATGCAATATTCGTGGCTAGCGCTTTTCTTTCTCTGCT 1535
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1310 TGATTTCTATCATCGATGGTTTGATGCAATATTCGTGGCCAGCGCTTTTCTTTCTCTGCT 1369
Query 1536 TCTGCTTTCTGCGCACTACACATCTCGTCAAATTGATAAGCACCCAATAGACTAAGCAAG 1595
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1370 TTTGCTTTCTGCGCACTACACATCTCGTCAAATTGATAAGCACCCGATAGACTAAGCAAG 1429
Query 1596 CATCTGTGTG 1605
|||||| |||
Sbjct 1430 CATCTGAGTG 1439
> Ahg475503 jgi|Araly1|475503|fgenesh2_kg.2__633__AT1G64990.1
Length=1668
Score = 798 bits (432), Expect = 0.0
Identities = 654/761 (86%), Gaps = 15/761 (2%)
Strand=Plus/Plus
Query 114 GATGGGTTACGGATGGGGGATCTTCGAGGGAATGTTGGTGATTGG-ATCTCTGTGTCTCT 172
|||| |||||||||||| ||| | ||| || | | |||| | ||| || |||||||| |
Sbjct 58 GATGAGTTACGGATGGGCGATATACGAAGGCACGGTGGTTA-TGGCTTCACTGTGTCTTT 116
Query 173 TAGGATCGGCTGGTCTATGGTTTCTCAACCGGAGGCTTTACAAAGAGTACGAAGAGAAGC 232
|||||| ||| ||| |||||||||| || ||||| || |||||||||||||||||||| |
Sbjct 117 TAGGATGGGCAGGTTTATGGTTTCTTAATCGGAGACTATACAAAGAGTACGAAGAGAAAC 176
Query 233 GAGCTTTGGTTCAAATCATTTTCAGCGTCGTCTTCGCCTTCTCTTGCAACCTTTTACAGC 292
||||||||||||||||||||||||| ||||||||||| |||||||| || || || ||||
Sbjct 177 GAGCTTTGGTTCAAATCATTTTCAGTGTCGTCTTCGCTTTCTCTTGTAATCTATTGCAGC 236
Query 293 TTGTTCTCTTCGAAATCATCCCTGTTTTATCTAGAGAGGCAAGGATGGTAAACTGGAAGG 352
||||| | ||||| ||||| |||||| | |||||||||||||||||| ||||||||||||
Sbjct 237 TTGTTTTGTTCGAGATCATACCTGTTCTCTCTAGAGAGGCAAGGATGATAAACTGGAAGG 296
Query 353 TGGATCTCTTTTGTTTGATAGTGCTCCTTGTTTTCATGTTACCTTATTATCATTGCTATT 412
||||||| |||||||| ||| | || || |||||| |||| || ||||| || |||||||
Sbjct 297 TGGATCTTTTTTGTTTAATACTTCTTCTCGTTTTCTTGTTGCCATATTACCACTGCTATT 356
Query 413 TGATGCTTCGTAACACTGGTGTAAGAAGAGAGCGTG-CTGCTGTTGGGGCCTTGTTATTC 471
||||||||||||| | |||||||||||| || |||| || |||||||||| || ||||||
Sbjct 357 TGATGCTTCGTAATAGTGGTGTAAGAAGGGACCGTGCCT-CTGTTGGGGCTTTCTTATTC 415
Query 472 TTGACAGCGTTCCTTTATGCTTTCTGGCGCATGGGAATACATTTTCCTATGCCTT---CA 528
||| |||| |||||||| || |||||||| |||||| | ||||| |||||||||| ||
Sbjct 416 TTGTCAGCATTCCTTTACGCATTCTGGCGTATGGGAGTTCATTTCCCTATGCCTTCAGCA 475
Query 529 GACAAAGGTTTCTTTT-CAATGCCTCAGCTGGTCAGCAGAATCGGGGTCATTGGTGTGAC 587
|| |||||||| |||| | ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 476 GATAAAGGTTT-TTTTACCATGCCTCAGCTGGTCAGTAGAATTGGGGTCATTGGTGTGAC 534
Query 588 CCTCATGGCCGTCTTATCGGGTTTTGGAGCTGTAAATTTGCCCTACAGTTATATATCGCT 647
| | ||||| |||||||| || |||||||||||||||||||||||||| |||||||| ||
Sbjct 535 CTTAATGGCTGTCTTATCAGGATTTGGAGCTGTAAATTTGCCCTACAGCTATATATCCCT 594
Query 648 CTTTATTAGGGAGATTGAAGAATCAGAAATAAAATCGCTGGAAAGGCAACTGATGCAATC 707
||| || ||||||||||||||| |||| |||| ||| ||||||||||||||||||| ||
Sbjct 595 CTTCATAAGGGAGATTGAAGAAGCAGATATAATATCTTTGGAAAGGCAACTGATGCAGTC 654
Query 708 AA-TGGAGACTTGCATAGCTAAGAAGAAGAAAATTCTTTTATGTCAAGTT-GAGGTGGAA 765
|| | ||||| |||||||| ||||||||||||||| |||| |||||| || |||||||||
Sbjct 655 AACT-GAGACGTGCATAGCAAAGAAGAAGAAAATTATTTTGTGTCAA-TTGGAGGTGGAA 712
Query 766 CGAAGTCTAGTATCAGAAGAGCATCA-AAAGGGTAAATCTTTCTTTAGAAGATTTGTCGG 824
|||| || || |||||||||| |||| ||| ||| |||||||| |||||| |||| ||
Sbjct 713 CGAAATCAAGGATCAGAAGAGAATCAGAAA-CGTAGCTCTTTCTTCAGAAGAATTGTTGG 771
Query 825 GACTGTTGTGCGGTCGGTTCAAGATGACCAAAAGGAGCAAG 865
|||||||||||||||||||||||||||||||||||| ||||
Sbjct 772 GACTGTTGTGCGGTCGGTTCAAGATGACCAAAAGGAACAAG 812
Score = 780 bits (422), Expect = 0.0
Identities = 581/659 (88%), Gaps = 6/659 (1%)
Strand=Plus/Plus
Query 936 AGATATAAAACTAATGGAGGCAGAGGTGGAAGGTTTAGAAGAGCTGTCAAAGCAGCTATT 995
||| |||||| || |||| || |||||||||| ||||| ||||||||||| ||| ||||
Sbjct 811 AGACATAAAAATATTGGAAGCGGAGGTGGAAGCCTTAGAGGAGCTGTCAAAACAGTTATT 870
Query 996 CTTGGAAATTTATGAACTCCGCCAAGCAAAGGATGCTGCTGCTTTTTCTCGAACTTGGAA 1055
|||||| | ||||| || || |||||||||||||||||||||| |||| ||||||||||
Sbjct 871 TTTGGAAGTATATGAGCTGCGTCAAGCAAAGGATGCTGCTGCTTATTCTAGAACTTGGAA 930
Query 1056 GGGTCATGTGCAGAACTTTCTTGGCTATGCGTGTTCCATTTACTGTGTGTATAAGATGTT 1115
|||||||||||||||||| ||||| ||||| || |||||||| ||||||||||| |||||
Sbjct 931 GGGTCATGTGCAGAACTTACTTGGTTATGCATGCTCCATTTATTGTGTGTATAAAATGTT 990
Query 1116 AAAGTCTCTACAAAGTGTCGTTTTCAAGGAGGCGGGCACGAAAGATCCTGTCACGATGAT 1175
||||||||||||||||| || ||||| ||||| || || ||||| |||||||||| |||
Sbjct 991 GAAGTCTCTACAAAGTGTTGTCTTCAAAGAGGCCGGTACAAAAGACCCTGTCACGACGAT 1050
Query 1176 GATCAGCATATTCTTGCAGTTCTTTGATATAGGAGTAGATGCAGCATTGCTCTCACAGTA 1235
|||||| |||||||||| ||| |||||||||||||||||||| ||| | |||||||||||
Sbjct 1051 GATCAGTATATTCTTGCGGTTGTTTGATATAGGAGTAGATGCTGCACTCCTCTCACAGTA 1110
Query 1236 TATTTCCCTGTTATTTATTGGGATGTTGATCGTGATATCAGTGAGGGGATTCTTGACGAA 1295
||| |||||||| || |||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1111 TATATCCCTGTTGTTCATTGGGATGTTGATTGTGATTTCTGTGAGGGGATTCTTGACGAA 1170
Query 1296 TCTGATGAAGTTCTTCTTTGCAGTGTCGAGGGTTGGAAGTGGATCTTCAAGCAATGTTGT 1355
||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct 1171 CCTGATGAAGTTTTTCTTTGCAGTCTCGAGAGTGGGAAGTGGGTCTTCAAGCAATGTTGT 1230
Query 1356 GCTCTTCCTATCAGAAATCATGGGAATGTACTTTTTGTCTTCCATTCTTCTTATAAGAAA 1415
||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1231 GCTTTTCCTATCTGAAATCATGGGAATGTACTTTTTGTCTTCAATTCTTCTTATCAGAAA 1290
Query 1416 AAGCTTGAGAAATGAGTACAGAGGG-ATAATAACAGATGTATTAGGCGGAGATATTCAGT 1474
||||||||||||||||||||| ||| || ||||||||||| || || ||||||||||| |
Sbjct 1291 AAGCTTGAGAAATGAGTACAG-GGGAATCATAACAGATGTGTTGGGTGGAGATATTCAAT 1349
Query 1475 TTGATTTCTATCATCGATGGTTTGATGCAATATTCGTGGCTAGCGCTTTTCTTTCTCTGC 1534
||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct 1350 TTGATTTCTATCATCGATGGTTTGATGCAATTTTTGTGGCAAGCGCTTTTCTGTCTCTCC 1409
Query 1535 TTCTGCTTTCTGCGCACTACACATCTCGTCAAAT-TGATAAGCAC-CCAATAGACTAAG 1591
|| ||||||| || || ||||| ||||||||| | |||||||||| ||| | || ||||
Sbjct 1410 TTTTGCTTTCCGCACATTACACGTCTCGTCAA-TCTGATAAGCACGCCA-TCGAGTAAG 1466
> Ahg945513 jgi|Araly1|945513|scaffold_701742.1
Length=443
Score = 158 bits (85), Expect = 2e-37
Identities = 87/88 (99%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 532 AAAGGTTTCTTTTCAATGCCTCAGCTGGTCAGCAGAATCGGGGTCATTGGTGTGACCCTC 591
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 248 AAAGGTTTCTTTTCAATGCCTCAACTGGTCAGCAGAATCGGGGTCATTGGTGTGACCCTC 307
Query 592 ATGGCCGTCTTATCGGGTTTTGGAGCTG 619
||||||||||||||||||||||||||||
Sbjct 308 ATGGCCGTCTTATCGGGTTTTGGAGCTG 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66848379975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5