BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27652.1

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492021 jgi|Araly1|492021|fgenesh2_kg.7__1454__AT4G27652.1         449    7e-126


> Ahg492021 jgi|Araly1|492021|fgenesh2_kg.7__1454__AT4G27652.1
Length=369

 Score =  449 bits (243),  Expect = 7e-126
 Identities = 304/331 (92%), Gaps = 13/331 (4%)
 Strand=Plus/Plus

Query  1    ACAAGCCACAACAACACCAATCACACTTCTCAAAAAAGATCAGAGATTTCTAGATCCTTC  60
            ||||||||||||| |||||||||||     |  ||||||||||||| |||||||||||||
Sbjct  1    ACAAGCCACAACACCACCAATCACA-----C--AAAAGATCAGAGACTTCTAGATCCTTC  53

Query  61   TTCTTCTCCTGCAAATTCATCTACCTGAATCTTCCAACTT-TATAAATCGATCATGATCT  119
            |||||||||||||||||| |||||||||||||||||| || | || ||||||||||||||
Sbjct  54   TTCTTCTCCTGCAAATTCCTCTACCTGAATCTTCCAATTTCTGTATATCGATCATGATCT  113

Query  120  CCGTCGTAATCATCGCTGAGTTACTAGTAGAGTACACGACGGCTCTCGCGAAACTAACCG  179
            | || ||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct  114  CTGTTGTAATCATCGCTGAGTTACTAGTGGAGTACACGGCGGCTCTCGCGAAACTCACCG  173

Query  180  CCGGGATTCTTCCATCGAGACGGCGAGGCGATAGTAACGTTGTACGGATTGGTGGTTTCT  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  174  CCGGGATTCTTCCATCGAGACGGCGAGGCGATAGTAACGTTGTACGGATTGGTGGTTTCT  233

Query  240  CTCTGCCTTGTCCTTCTCCGTCGAGTAGTAGTACTAGTCGATCATCTGC-GATTCCAGAT  298
            ||||||||||||||||||||||||||| |||||   ||||||| || || ||||||||||
Sbjct  234  CTCTGCCTTGTCCTTCTCCGTCGAGTACTAGTA---GTCGATCGTC-GCCGATTCCAGAT  289

Query  299  TTCTCTTCTCATCTCGTTGATTTCTGATCTT  329
            ||||| |||||||||||||||||||||||||
Sbjct  290  TTCTCCTCTCATCTCGTTGATTTCTGATCTT  320



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19077794500


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5