BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27654.1

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945280 jgi|Araly1|945280|scaffold_701509.1                        327    3e-89


> Ahg945280 jgi|Araly1|945280|scaffold_701509.1
Length=235

 Score =  327 bits (177),  Expect = 3e-89
 Identities = 215/233 (92%), Gaps = 3/233 (1%)
 Strand=Plus/Plus

Query  81   TTCCGAAAAAGTCGATCATGATTTCCATCGTAATCATTACTGAGCTACTAGTAGAGTACA  140
            |||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct  4    TTCCAAAAAAGTTGATCATGATCTCCATCGTAATCATTACTGAGCTACTAGTGGAGTACA  63

Query  141  CGACGGCTCTGGCTAAACTTACCGCCGGGATTCTTCCGAGACGGCAAGGCGAT-GGAGAC  199
            ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||
Sbjct  64   CGACGGCTCTGGCTAAACTCACCGCCGGGATTCTTCCGAGACGGCAAGGTGATGGGA-AC  122

Query  200  GTCGTTAGAATTGGTGGTTTCTCTTTATATTGTCCTCCTAGATCATCACCGATTCCGGAT  259
            |||||| | |||||  |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  123  GTCGTTCGGATTGGCAGTTTCTCTATATATTGTCCTCCTAGATCATCACCGATTCCGGAT  182

Query  260  TTTTCTTCTCATCTCGTCGATTTCTGATATAAGACGATTGTGGATTGtttttt  312
            |||||||||||||| |||||||||||| ||  |||||||||||||| ||||||
Sbjct  183  TTTTCTTCTCATCTTGTCGATTTCTGACATGTGACGATTGTGGATT-TTTTTT  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17475259762


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5