BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27657.1

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492020 jgi|Araly1|492020|fgenesh2_kg.7__1453__AT4G27657.1         438    1e-122
  Ahg945280 jgi|Araly1|945280|scaffold_701509.1                        200    7e-51 


> Ahg492020 jgi|Araly1|492020|fgenesh2_kg.7__1453__AT4G27657.1
Length=419

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 328/370 (89%), Gaps = 14/370 (4%)
 Strand=Plus/Plus

Query  24   AGAGATAACAAACTTCAGAAACTTCTAGGGCC---ATTTTTA--TTCCGGTGCATCCTAA  78
            ||||||||||||||||||||||||||||  ||    ||||||  |||||| | |||||||
Sbjct  1    AGAGATAACAAACTTCAGAAACTTCTAGACCCTTTTTTTTTACCTTCCGGCGAATCCTAA  60

Query  79   TCATGATATCTGTTGTAATCATCACTGAGTTACTTTTGGAGTACACGACGGCTCTTGCTA  138
            |||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||
Sbjct  61   TCATGATATCTGTTGTAATCATTACTGAGTTACTGGTGGAGTACACGACGGCTCTTGCTA  120

Query  139  AACTCACCGCCGGGGTTCTTCCGAGACGGCAAGGCGACAGAAATGTTATACGTATTGGCG  198
            ||||||| ||||||||| ||||||| || ||||||||||| |||||||||||||| || |
Sbjct  121  AACTCACTGCCGGGGTTTTTCCGAGGCGACAAGGCGACAGGAATGTTATACGTATCGGTG  180

Query  199  GTTTCTCTCTGCCTTGTCCTCCTAGATCCTCACCTGTTCCAGATTTTTCTTCTCATCTTG  258
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  181  GTTTCTCTCTGCCTTGTCCTCCTAGATCCTCACCTGTTCCAGACTTTTCTTCTCATCTTG  240

Query  259  TCGATTTCTGAACTCTGCGCTACGCCTTAATCTCAATTTTGGTTTTTCACCGGAGATTAT  318
            ||||||||||| ||||| ||||||| || |||| ||||||| |||||||||||||||| |
Sbjct  241  TCGATTTCTGATCTCTGTGCTACGC-TTGATCTAAATTTTGTTTTTTCACCGGAGATTCT  299

Query  319  GACTGCCAAGACTTTTTTCCCGGCGTCTGATCT---CTC-C-GTCTGTAGAATACCtttt  373
            | | ||| |||||||||||  ||||||||||||   ||| | ||||||||||||  ||||
Sbjct  300  GGCGGCCGAGACTTTTTTCTGGGCGTCTGATCTGATCTCTCCGTCTGTAGAATA--TTTT  357

Query  374  t-tgtatttt  382
            | || |||||
Sbjct  358  TCTGGATTTT  367


> Ahg945280 jgi|Araly1|945280|scaffold_701509.1
Length=235

 Score =  200 bits (108),  Expect = 7e-51
 Identities = 165/193 (85%), Gaps = 2/193 (1%)
 Strand=Plus/Plus

Query  78   ATCATGATATCTGTTGTAATCATCACTGAGTTACTTTTGGAGTACACGACGGCTCTTGCT  137
            |||||||| ||  | |||||||| |||||| ||||  ||||||||||||||||||| |||
Sbjct  18   ATCATGATCTCCATCGTAATCATTACTGAGCTACTAGTGGAGTACACGACGGCTCTGGCT  77

Query  138  AAACTCACCGCCGGGGTTCTTCCGAGACGGCAAGGCGACAGAAATGTTATACGTATTGGC  197
            ||||||||||||||| ||||||||||||||||||| ||  | || ||  | || ||||||
Sbjct  78   AAACTCACCGCCGGGATTCTTCCGAGACGGCAAGGTGATGGGAACGTCGTTCGGATTGGC  137

Query  198  GGTTTCTCTCTGCCTTGTCCTCCTAGATCCTCACCTG-TTCCAGATTTTTCTTCTCATCT  256
             |||||||| |   ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct  138  AGTTTCTCTATATATTGTCCTCCTAGATCATCACC-GATTCCGGATTTTTCTTCTCATCT  196

Query  257  TGTCGATTTCTGA  269
            |||||||||||||
Sbjct  197  TGTCGATTTCTGA  209



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17131859461


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5